R38W88 last accessed: 2022-11-04

Carbohydrate-active enzymes database (CAZy)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

cazy
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

Other names: CAZy, Carbohydrate-Active enZYmes Database, Carbohydrate-active enzymes database (CAZy), cazy

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

Webpage:

http://www.cazy.org/

Licence:

Name: other
URL: http://www.afmb.univ-mrs.fr/mentions-legalen

Publications:

Publications
More detailed information about this field from each metasource.

The carbohydrate-active enzymes database (CAZy) in 2013
PMID: 24270786
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
PMID: 18838391
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

http://dx.doi.org/10.1093/nar/gkt1178
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The carbohydrate-active enzymes database (CAZy) in 2013 PubMed citations: 2221.

2221 articles citing: The carbohydrate-active enzymes database (CAZy) in 2013

Genome sequence and comparative analysis of fungal antagonistic strain Bacillus velezensis LJBV19. PMID:35913660
Novel Microorganisms Contribute to Biosulfidogenesis in the Deep Layer of an Acidic Pit Lake. PMID:35910036
Dynamic Transcriptomic Profiling During Liver Development in Schizothorax Prenanti. PMID:35899028
Recombinant Family 1 Carbohydrate-Binding Modules Derived From Fungal Cellulase Enhance Enzymatic Degradation of Lignocellulose as Novel Effective Accessory Protein. PMID:35898911
An Age Effect of Rumen Microbiome in Dairy Buffaloes Revealed by Metagenomics. PMID:35893549
Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora. PMID:35892327
Acetylated Xylan Degradation by Glycoside Hydrolase Family 10 and 11 Xylanases from the White-rot Fungus Phanerochaete chrysosporium. PMID:35891899
Genomic Characteristics and Comparative Genomics Analysis of Parafenestella ontariensis sp. nov. PMID:35887487
Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants. PMID:35864536
Structural and functional characteristics of soil microbial community in a Pinus massoniana forest at different elevations. PMID:35860041
Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. PMID:35858888
Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A). PMID:35854001
Biochemical and Structural Characterization of Thermostable GH159 Glycoside Hydrolases Exhibiting α-L-Arabinofuranosidase Activity. PMID:35847984
Exploring the multi-level regulation of lignocellulases in the filamentous fungus Trichoderma guizhouense NJAU4742 from an omics perspective. PMID:35842666
Characterization of a novel thermophilic metagenomic GH5 endoglucanase heterologously expressed in Escherichia coli and Saccharomyces cerevisiae. PMID:35799200
Functional metagenomic screening identifies an unexpected β-glucuronidase. PMID:35799064
Structural and biochemical analysis reveals how ferulic acid improves catalytic efficiency of Humicola grisea xylanase. PMID:35794132
Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids. PMID:35790765
Composition and Ecological Roles of the Core Microbiome along the Abyssal-Hadal Transition Zone Sediments of the Mariana Trench. PMID:35768947
Evaluation and Genome Analysis of Bacillus subtilis YB-04 as a Potential Biocontrol Agent Against Fusarium Wilt and Growth Promotion Agent of Cucumber. PMID:35756052
Understanding the Variation of Bacteria in Response to Summertime Oxygen Depletion in Water Column of Bohai Sea. PMID:35756048
Genome-Scale Mutational Analysis of Cathode-Oxidizing Thioclava electrotropha ElOx9T. PMID:35756027
Cellulolytic and Xylanolytic Enzymes from Yeasts: Properties and Industrial Applications. PMID:35744909
Transcriptome-Guided Identification of Pectin Methyl-Esterase-Related Enzymes and Novel Molecular Processes Effectuating the Hard-to-Cook Defect in Common Bean (Phaseolus vulgaris L.). PMID:35741889
Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01. PMID:35717508
Metagenomic Analysis Revealed Differences in Composition and Function Between Liquid-Associated and Solid-Associated Microorganisms of Sheep Rumen. PMID:35711780
Complete biosynthetic pathway to the antidiabetic drug acarbose. PMID:35705566
Identification of α-L-fucosidase (ALFuc) of Blastocystis sp. subtypes ST1, ST2 and ST3. PMID:35703609
Unique pool of carbohydrate-degrading enzymes in novel bacteria assembled from cow and buffalo rumen metagenomes. PMID:35699736
Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line. PMID:35698170
Genome-wide identification of BAM (β-amylase) gene family in jujube (Ziziphus jujuba Mill.) and expression in response to abiotic stress. PMID:35698031
Functions of Glycosylation and Related Web Resources for Its Prediction. PMID:35696078
Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants. PMID:35695455
Thermophilic Geobacillus WSUCF1 Secretome for Saccharification of Ammonia Fiber Expansion and Extractive Ammonia Pretreated Corn Stover. PMID:35694290
Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose Degradation and Terpenoid Synthesis. PMID:35685935
A Secreted Lignin Peroxidase Required for Fungal Growth and Virulence and Related to Plant Immune Response. PMID:35682745
Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates. PMID:35676509
Complete genome sequence of the Pogostemon cablin bacterial wilt pathogen Ralstonia solanacearum strain SY1. PMID:35670995
Moesziomyces spp. cultivation using cheese whey: new yeast extract-free media, β-galactosidase biosynthesis and mannosylerythritol lipids production. PMID:35669232
Metagenomic and Metabolomic Insights Into the Mechanism Underlying the Disparity in Milk Yield of Holstein Cows. PMID:35668764
Changes in the Metagenome-Encoded CAZymes of the Rumen Microbiome Are Linked to Feed-Induced Reductions in Methane Emission From Holstein Cows. PMID:35668758
Complete Genome Sequence of Weissella cibaria NH9449 and Comprehensive Comparative-Genomic Analysis: Genomic Diversity and Versatility Trait Revealed. PMID:35663880
Applying transcriptomics to studyglycosylation at the cell type level. PMID:35663018
Characterisation of recombinant GH 3 β-glucosidase from β-glucan producing Levilactobacillus brevis TMW 1.2112. PMID:35661053
Seasonality of Glacial Snow and Ice Microbial Communities. PMID:35651494
Azido Groups Hamper Glycan Acceptance by Carbohydrate Processing Enzymes. PMID:35647280
AA15 lytic polysaccharide monooxygenase is required for efficient chitinous cuticle turnover during insect molting. PMID:35641660
Prebiotics and the Human Gut Microbiota: From Breakdown Mechanisms to the Impact on Metabolic Health. PMID:35631237
Three Diverse Granule Preparation Methods for Proteomic Analysis of Mature Rice (Oryza sativa L.) Starch Grain. PMID:35630784
Whole-Genome Sequencing Reveals Lignin-Degrading Capacity of a Ligninolytic Bacterium (Bacillus cereus) from Buffalo (Bubalus bubalis) Rumen. PMID:35627226
Novel Thermostable Heparinase Based on the Genome of Bacteroides Isolated from Human Gut Microbiota. PMID:35627031
The functional evolution of termite gut microbiota. PMID:35624491
The Endo-α(1,3)-Fucoidanase Mef2 Releases Uniquely Branched Oligosaccharides from Saccharina latissima Fucoidans. PMID:35621956
Comprehensive Genomic Analysis of Marine Strain Streptomyces sp. 891, an Excellent Producer of Chrysomycin A with Therapeutic Potential. PMID:35621938
Recent advancements in hydrocarbon bioremediation and future challenges: a review. PMID:35620568
Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis. PMID:35614207
The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. PMID:35604096
Genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of the thermophilic Caldicoprobacter algeriensis TH7C1T. PMID:35598016
Transmembrane transport process and endoplasmic reticulum function facilitate the role of gene cel1b in cellulase production of Trichoderma reesei. PMID:35590356
Consuming fresh macroalgae induces specific catabolic pathways, stress reactions and Type IX secretion in marine flavobacterial pioneer degraders. PMID:35589967
Characterizing the mucin-degrading capacity of the human gut microbiota. PMID:35589783
Gene Mining and Flavour Metabolism Analyses of Wickerhamomyces anomalus Y-1 Isolated From a Chinese Liquor Fermentation Starter. PMID:35586860
Adaptation of gut microbiome and host metabolic systems to lignocellulosic degradation in bamboo rats. PMID:35568757
Emerging Roles of β-Glucanases in Plant Development and Adaptative Responses. PMID:35567119
Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans. PMID:35566004
Effects of Module Truncation of a New Alginate Lyase VxAly7C from Marine Vibrio xiamenensis QY104 on Biochemical Characteristics and Product Distribution. PMID:35563187
Exploration of genomic and functional features of chitinolytic bacterium Streptomyces chilikensis RC1830, isolated from Chilika Lake, India. PMID:35547016
Technical pipeline for screening microbial communities as a function of substrate specificity through fluorescent labelling. PMID:35545700
Biochemical characterization of a novel ulvan lyase from Pseudoalteromonas sp. strain PLSV. PMID:35541464
An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome. PMID:35533274
Structural and functional adaptation in extremophilic microbial α-amylases. PMID:35528036
Flavobacterium hungaricum sp. nov. a novel soil inhabitant, cellulolytic bacterium isolated from plough field. PMID:35524012
The Role of Glycoside Hydrolases in S. gordonii and C. albicans Interactions. PMID:35506689
A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc Polysaccharides. PMID:35505869
Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing. PMID:35501417
Genetic divergence and functional convergence of gut bacteria between the Eastern honey bee Apis cerana and the Western honey bee Apis mellifera. PMID:35499050
Gut Microbiota of Ostrinia nubilalis Larvae Degrade Maize Cellulose. PMID:35495661
GURFAP: A Platform for Gene Function Analysis in Glycyrrhiza Uralensis. PMID:35495163
Family 1 Glycosyltransferase UGT706F8 from Zea mays Selectively Catalyzes the Synthesis of Silibinin 7-O-β-d-Glucoside. PMID:35493695
Comparative Genomics Unveils the Habitat Adaptation and Metabolic Profiles of Clostridium in an Artificial Ecosystem for Liquor Production. PMID:35491831
Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. PMID:35486731
Comparative analysis of genome-based CAZyme cassette in Antarctic Microbacterium sp. PAMC28756 with 31 other Microbacterium species. PMID:35486322
Utilization of glycosaminoglycans by the human gut microbiota: participating bacteria and their enzymatic machineries. PMID:35482895
New α-galactosidase-inhibiting aminohydroxycyclopentanes. PMID:35481199
ABO genotype alters the gut microbiota by regulating GalNAc levels in pigs. PMID:35477154
Into the darkness: the ecologies of novel 'microbial dark matter' phyla in an Antarctic lake. PMID:35466505
Plant Cell Wall Proteomes: The Core of Conserved Protein Families and the Case of Non-Canonical Proteins. PMID:35457091
Transcriptome Profiling Reveals Differential Gene Expression of Laccase Genes in Aspergillus terreus KC462061 during Biodegradation of Crude Oil. PMID:35453763
Pan-Genome Analysis of Laribacter hongkongensis: Virulence Gene Profiles, Carbohydrate-Active Enzyme Prediction, and Antimicrobial Resistance Characterization. PMID:35432229
Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential. PMID:35430593
Ligand compatibility of salacinol-type α-glucosidase inhibitors toward the GH31 family. PMID:35424309
Activity-based protein profiling reveals dynamic substrate-specific cellulase secretion by saprotrophic basidiomycetes. PMID:35418096
Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics. PMID:35417463
Biosynthesis of exopolysaccharide and structural characterization by Lacticaseibacillus paracasei ZY-1 isolated from Tibetan kefir. PMID:35415646
Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel_I_6 consumes alpha-mannan from fungi. PMID:35414716
Generation of a Library of Carbohydrate-Active Enzymes for Plant Biomass Deconstruction. PMID:35409382
Identification of New QTLs for Dietary Fiber Content in Aegilops biuncialis. PMID:35409181
Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf. PMID:35404072
Identification of Glycoside Transporters From the Human Gut Microbiome. PMID:35401468
Pangenome Analysis of the Soilborne Fungal Phytopathogen Rhizoctonia solani and Development of a Comprehensive Web Resource: RsolaniDB. PMID:35401459
Editorial: Fungal Genetics in Plant Biomass Conversion. PMID:35401427
Heterologous expression and characterization of two novel glucanases derived from sheep rumen microbiota. PMID:35397717
The cellulose synthase-like F3 (CslF3) gene mediates cell wall polysaccharide synthesis and affects root growth and differentiation in barley. PMID:35395116
Agl24 is an ancient archaeal homolog of the eukaryotic N-glycan chitobiose synthesis enzymes. PMID:35394422
The biosynthetic origin of ribofuranose in bacterial polysaccharides. PMID:35393575
Description and genome analysis of Luteimonas viscosa sp. nov., a novel bacterium isolated from soil of a sunflower field. PMID:35391590
Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome. PMID:35378131
Unique properties of a Dictyostelium discoideum carbohydrate-binding module expand our understanding of CBM-ligand interactions. PMID:35378128
Toward Understanding the Alginate Catabolism in Microbulbifer sp. ALW1 by Proteomics Profiling. PMID:35372316
Cerebral Intraparenchymal Hemorrhage Changes Patients' Gut Bacteria Composition and Function. PMID:35372117
The Infant Gut Commensal Bacteroides dorei Presents a Generalized Transcriptional Response to Various Human Milk Oligosaccharides. PMID:35372092
The phyllosphere microbiome shifts toward combating melanose pathogen. PMID:35366955
Secreted Glycoside Hydrolase Proteins as Effectors and Invasion Patterns of Plant-Associated Fungi and Oomycetes. PMID:35360318
Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus Aspergillus niger. PMID:35359804
Machine Learning and Deep Learning Applications in Metagenomic Taxonomy and Functional Annotation. PMID:35359727
Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families. PMID:35353898
Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta. PMID:35348388
Carbohydrate-active enzymes (CAZymes) in the gut microbiome. PMID:35347288
Comparative Genomic Analysis Reveals Intestinal Habitat Adaptation of Ligilactobacillus&nbsp;equi Rich in Prophage and Degrading Cellulase. PMID:35335231
Functional Classification and Characterization of the Fungal Glycoside Hydrolase 28 Protein Family. PMID:35330219
Proteomic Analysis Reveals Enzymes for β-D-Glucan Formation and Degradation in Levilactobacillus brevis TMW 1.2112. PMID:35328813
From Cancer Therapy to Winemaking: The Molecular Structure and Applications of β-Glucans and β-1, 3-Glucanases. PMID:35328577
A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications. PMID:35328559
Botrytis cinerea Loss and Restoration of Virulence during In Vitro Culture Follows Flux in Global DNA Methylation. PMID:35328468
Crucial Residues of C-Terminal Oligopeptide C60 to Improve the Yield of Prebiotic Xylooligosaccharides by Truncated Mutation. PMID:35327284
A Novel Alginate Lyase: Identification, Characterization, and Potential Application in Alginate Trisaccharide Preparation. PMID:35323458
Shinella oryzae sp. nov., a novel zearalenone-resistant bacterium isolated from rice paddy soil. PMID:35312873
Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut. PMID:35312171
Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis. PMID:35311955
Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk. PMID:35311446
Mechanism and biomass association of glucuronoyl esterase: an α/β hydrolase with potential in biomass conversion. PMID:35304453
In silico evaluation of a targeted metaproteomics strategy for broad screening of cellulolytic enzyme capacities in anaerobic microbiome bioreactors. PMID:35303956
Enzymatic Verification and Comparative Analysis of Carrageenan Metabolism Pathways in Marine Bacterium Flavobacterium algicola. PMID:35293779
Structural basis of the strict specificity of a bacterial GH31 α-1,3-glucosidase for nigerooligosaccharides. PMID:35293315
Metabolism of a hybrid algal galactan by members of the human gut microbiome. PMID:35289327
Disclosing the Genomic Diversity among Members of the Bifidobacterium Genus of Canine and Feline Origin with Respect to Those from Human. PMID:35285708
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Network Analysis Reveals Different Cellulose Degradation Strategies Across Trichoderma harzianum Strains Associated With XYR1 and CRE1. PMID:35281818
Microbiome Resilience and Health Implications for People in Half-Year Travel. PMID:35281043
Synthetic glycans control gut microbiome structure and mitigate colitis in mice. PMID:35273143
A Comparative Genomic and Safety Assessment of Six Lactiplantibacillus plantarum subsp. argentoratensis Strains Isolated from Spontaneously Fermented Greek Wheat Sourdoughs for Potential Biotechnological Application. PMID:35269627
The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut. PMID:35266814
The evolution and competitive strategies of Akkermansia muciniphila in gut. PMID:35263215
Glycosyltransferases: Mining, engineering and applications in biosynthesis of glycosylated plant natural products. PMID:35261926
Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods. PMID:35258341
Considerations for constructing a protein sequence database for metaproteomics. PMID:35242286
Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE. PMID:35241669
Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. PMID:35234151
Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data. PMID:35232471
Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome. PMID:35230102
Forgotten Actors: Glycoside Hydrolases During Elongation Growth of Maize Primary Root. PMID:35222452
Polysialic Acid in the Immune System. PMID:35222358
Quantifying lysosomal glycosidase activity within cells using bis-acetal substrates. PMID:35210619
Production of Large-Ring Cyclodextrins by Amylomaltases. PMID:35209232
Comparative Genomics of Clostridium baratii Reveals Strain-Level Diversity in Toxin Abundance. PMID:35208668
Hybrid Assembly Improves Genome Quality and Completeness of Trametes villosa CCMB561 and Reveals a Huge Potential for Lignocellulose Breakdown. PMID:35205897
Unraveling the Genome Sequence of Plant Growth Promoting Aspergillus niger (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics. PMID:35205861
Genomic Analyses of the Fungus Paraconiothyrium sp. Isolated from the Chinese White Wax Scale Insect Reveals Its Symbiotic Character. PMID:35205383
Glycosylating Effectors of Legionella pneumophila: Finding the Sweet Spots for Host Cell Subversion. PMID:35204756
Protonation State of an Important Histidine from High Resolution Structures of Lytic Polysaccharide Monooxygenases. PMID:35204695
Genomic Sequence and Transcriptome Analysis of the Medicinal Fungus Keithomyces neogunnii. PMID:35201278
Small tools for sweet challenges: advances in microfluidic technologies for glycan synthesis. PMID:35199190
IMA Genome - F16 : Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta. PMID:35197126
Dual adhesive unipolar polysaccharides synthesized by overlapping biosynthetic pathways in Agrobacterium tumefaciens. PMID:35191101
The Endo-α(1,4) Specific Fucoidanase Fhf2 From Formosa haliotis Releases Highly Sulfated Fucoidan Oligosaccharides. PMID:35185990
Cellulolytic bacteria in the large intestine of mammals. PMID:35184689
Thermophiles and carbohydrate-active enzymes (CAZymes) in biofilm microbial consortia that decompose lignocellulosic plant litters at high temperatures. PMID:35181739
2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem. PMID:35171663
A Bacterial Genome and Culture Collection of Gut Microbial in Weanling Piglet. PMID:35171009
Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group. PMID:35169264
Yeast GH30 Xylanase from Sugiyamaella lignohabitans Is a Glucuronoxylanase with Auxiliary Xylobiohydrolase Activity. PMID:35164030
Broad Specific Xyloglucan:Xyloglucosyl Transferases Are Formidable Players in the Re-Modelling of Plant Cell Wall Structures. PMID:35163576
A Fungal Versatile GH10 Endoxylanase and Its Glycosynthase Variant: Synthesis of Xylooligosaccharides and Glycosides of Bioactive Phenolic Compounds. PMID:35163307
Development of a Real-Time Pectic Oligosaccharide-Detecting Biosensor Using the Rapid and Flexible Computational Identification of Non-Disruptive Conjugation Sites (CINC) Biosensor Design Platform. PMID:35161692
Critical Determinants in ER-Golgi Trafficking of Enzymes Involved in Glycosylation. PMID:35161411
Plant-microbe interactions in the apoplast: Communication at the plant cell wall. PMID:35157079
Genomic Insights Into Cadmium Resistance of a Newly Isolated, Plasmid-Free Cellulomonas sp. Strain Y8. PMID:35154027
The gut microbiome and antibiotic resistome of chronic diarrhea rhesus macaques (Macaca mulatta) and its similarity to the human gut microbiome. PMID:35139923
Comparative metagenomics analysis reveals how the diet shapes the gut microbiota in several small mammals. PMID:35136548
Unusual substrate specificity in GH family 12: structure-function analysis of glucanases Bgh12A and Xgh12B from Aspergillus cervinus, and Egh12 from Thielavia terrestris. PMID:35129654
Isolation, characterization and comparative genomics of potentially probiotic Lactiplantibacillus plantarum strains from Indian foods. PMID:35121802
Comparison of glycoside hydrolase family 3 β-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems. PMID:35120929
Complete genome sequence of the kiwifruit bacterial canker pathogen Pseudomonas savastanoi strain MHT1. PMID:35120460
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides. PMID:35110564
Differential Response of Bacterial Microdiversity to Simulated Global Change. PMID:35108096
The exploitation of human glycans by Group A Streptococcus. PMID:35104861
Exploring the Possible Link between the Gut Microbiome and Fat Deposition in Pigs. PMID:35103093
Genomic insight into the scale specialization of the biological control agent Novius pumilus (Weise, 1892). PMID:35100986
Tunable Production of (R)- or (S)-Citronellal from Geraniol via a Bienzymatic Cascade Using a Copper Radical Alcohol Oxidase and Old Yellow Enzyme. PMID:35096467
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E. PMID:35095781
Comparison of Six Lytic Polysaccharide Monooxygenases from Thermothielavioides terrestris Shows That Functional Variation Underlies the Multiplicity of LPMO Genes in Filamentous Fungi. PMID:35080911
Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome. PMID:35075131
Computer Simulation to Rationalize "Rational" Engineering of Glycoside Hydrolases and Glycosyltransferases. PMID:35073079
Biophysical characterization of the recombinant chitinase chi18-5 with potential biotechnological interest. PMID:35072736
Structure and Function of Rhizosphere Soil and Root Endophytic Microbial Communities Associated With Root Rot of Panax notoginseng. PMID:35069616
The Function of CBM32 in Alginate Lyase VxAly7B on the Activity on Both Soluble Sodium Alginate and Alginate Gel. PMID:35069502
Characterization and structural analyses of a novel glycosyltransferase acting on the β-1,2-glucosidic linkages. PMID:35065074
Genomic insights into versatile lifestyle of three new bacterial candidate phyla. PMID:35060074
Mucisphaera calidilacus gen. nov., sp. nov., a novel planctomycete of the class Phycisphaerae isolated in the shallow sea hydrothermal system of the Lipari Islands. PMID:35050438
Unlocking the Hydrolytic Mechanism of GH92 α-1,2-Mannosidases: Computation Inspires the use of C-Glycosides as Michaelis Complex Mimics. PMID:35049087
Investigating the role of carbohydrate-binding module 34 in cyclomaltodextrinase from Geobacillus thermopakistaniensis: structural and functional analyses. PMID:35036273
Mining for novel cyclomaltodextrin glucanotransferases unravels the carbohydrate metabolism pathway via cyclodextrins in Thermoanaerobacterales. PMID:35031648
Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern. PMID:35028537
Inferring microbiota functions from taxonomic genes: a review. PMID:35022702
Mammalian brain glycoproteins exhibit diminished glycan complexity compared to other tissues. PMID:35022400
Synthesis of broad-specificity activity-based probes for exo-β-mannosidases. PMID:35015006
Biochemical and Structural Analysis of a Glucose-Tolerant β-Glucosidase from the Hemicellulose-Degrading Thermoanaerobacterium saccharolyticum. PMID:35011521
Sculpting therapeutic monoclonal antibody N-glycans using endoglycosidases. PMID:34998123
Discovery of solabiose phosphorylase and its application for enzymatic synthesis of solabiose from sucrose and lactose. PMID:34997180
Heterologous expression of 4α-glucanotransferase: overproduction and properties for industrial applications. PMID:34993677
The Pseudomonas aeruginosa homeostasis enzyme AlgL clears the periplasmic space of accumulated alginate during polymer biosynthesis. PMID:34990713
Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption. PMID:34988389
Structural and functional changes in the fungal community of plant detritus in an invaded Atlantic Forest. PMID:34986801
Genomic Analyses of Pediococcus pentosaceus ST65ACC, a Bacteriocinogenic Strain Isolated from Artisanal Raw-Milk Cheese. PMID:34984631
Mechanistic insights into the digestion of complex dietary fibre by the rumen microbiota using combinatorial high-resolution glycomics and transcriptomic analyses. PMID:34976318
Draft Genome Sequence of a New Fusarium Isolate Belonging to Fusarium tricinctum Species Complex Collected From Hazelnut in Central Italy. PMID:34975974
The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping. PMID:34971560
Characterization of an extracellular α-xylosidase involved in xyloglucan degradation in Aspergillus oryzae. PMID:34971412
Salivary Microbiome in Adenoid Cystic Carcinoma Detected by 16S rRNA Sequencing and Shotgun Metagenomics. PMID:34970508
Ligand-Induced Conformational and Dynamical Changes in a GT-B Glycosyltransferase: Molecular Dynamics Simulations of Heptosyltransferase I Complexes. PMID:34967618
Lytic Polysaccharide Monooxygenase from Talaromyces amestolkiae with an Enigmatic Linker-like Region: The Role of This Enzyme on Cellulose Saccharification. PMID:34948409
The Carbohydrate Metabolism of Lactiplantibacillus plantarum. PMID:34948249
Ustilago maydis Secreted Endo-Xylanases Are Involved in Fungal Filamentation and Proliferation on and Inside Plants. PMID:34947062
Current Perspectives on Chitinolytic Enzymes and Their Agro-Industrial Applications. PMID:34943233
Double mutations far from the active site affect cold activity in an Antarctic halophilic β-galactosidase. PMID:34939242
Analysis of fungal high-mannose structures using CAZymes. PMID:34939126
How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding. PMID:34939101
Select Streptococci Can Degrade Candida Mannan To Facilitate Growth. PMID:34936835
Gamma cyclodextrin glycosyltransferase from evansella caseinilytica: production, characterization and product specificity. PMID:34926120
Cloning, expression, purification and characterization of chitin deacetylase extremozyme from halophilic Bacillus aryabhattai B8W22. PMID:34917446
Genomic landscape of a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism. PMID:34916613
Genomic analysis of Elsinoë arachidis reveals its potential pathogenic mechanism and the biosynthesis pathway of elsinochrome toxin. PMID:34914789
Activity and substrate specificity of lytic polysaccharide monooxygenases: An ATR FTIR-based sensitive assay tested on a novel species from Pseudomonas putida. PMID:34897841
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol. PMID:34897429
Investigation of core machinery for biosynthesis of Vi antigen capsular polysaccharides in Gram-negative bacteria. PMID:34896394
Carbon assimilating fungi from surface ocean to subseafloor revealed by coupled phylogenetic and stable isotope analysis. PMID:34893690
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. PMID:34893091
Fungal cellulases: protein engineering and post-translational modifications. PMID:34889986
Identifying the essential nutritional requirements of the probiotic bacteria Bifidobacterium animalis and Bifidobacterium longum through genome-scale modeling. PMID:34887435
The Second Chromosome Promotes the Adaptation of the Genus Flammeovirga to Complex Environments. PMID:34878294
Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data. PMID:34874247
Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum. PMID:34867897
Metagenomic Analysis Reveals New Microbiota Related to Fiber Digestion in Pigs. PMID:34867862
Time-restricted feeding induces Lactobacillus- and Akkermansia-specific functional changes in the rat fecal microbiota. PMID:34862421
Regioselective C4 and C6 Double Oxidation of Cellulose by Lytic Polysaccharide Monooxygenases. PMID:34859958
Catalytic flexibility of rice glycosyltransferase OsUGT91C1 for the production of palatable steviol glycosides. PMID:34857750
Muribaculaceae Genomes Assembled from Metagenomes Suggest Genetic Drivers of Differential Response to Acarbose Treatment in Mice. PMID:34851167
Discovery of an Antarctic Ascidian-Associated Uncultivated Verrucomicrobia with Antimelanoma Palmerolide Biosynthetic Potential. PMID:34851164
The carbohydrate-active enzyme database: functions and literature. PMID:34850161
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357. PMID:34849826
Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. PMID:34849197
Lacticaseibacillus paracasei: Occurrence in the Human Gut Microbiota and K-Mer-Based Assessment of Intraspecies Diversity. PMID:34833122
In Vitro Study of Biocontrol Potential of Rhizospheric Pseudomonas aeruginosa against Pathogenic Fungi of Saffron (Crocus sativus L.). PMID:34832579
Bioconversion of Lignocellulosic Biomass into Value Added Products under Anaerobic Conditions: Insight into Proteomic Studies. PMID:34830131
Genomic and Phylogenetic Analysis of Lactiplantibacillus plantarum L125, and Evaluation of Its Anti-Proliferative and Cytotoxic Activity in Cancer Cells. PMID:34829947
Heterologous Expression of a Thermostable Chitinase from Myxococcus xanthus and Its Application for High Yield Production of Glucosamine from Shrimp Shell. PMID:34829089
Glycoside Hydrolases and Glycosyltransferases from Hyperthermophilic Archaea: Insights on Their Characteristics and Applications in Biotechnology. PMID:34827555
Hybrid de novo genome-reassembly reveals new insights on pathways and pathogenicity determinants in rice blast pathogen Magnaporthe oryzae RMg_Dl. PMID:34824307
Structural and Biochemical Basis of a Marine Bacterial Glycoside Hydrolase Family 2 β-Glycosidase with Broad Substrate Specificity. PMID:34818100
Controllable Iterative β-Glucosylation from UDP-Glucose by Bacillus cereus Glycosyltransferase GT1: Application for the Synthesis of Disaccharide-Modified Xenobiotics. PMID:34817995
Metagenomics of Antarctic Marine Sediment Reveals Potential for Diverse Chemolithoautotrophy. PMID:34817234
Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome. PMID:34814938
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii. PMID:34789157
A Superefficient Ochratoxin A Hydrolase with Promising Potential for Industrial Applications. PMID:34788069
GH47 and Other Glycoside Hydrolases Catalyze Glycosidic Bond Cleavage with the Assistance of Substrate Super-arming at the Transition State. PMID:34777906
Modulating Glycoside Hydrolase Activity between Hydrolysis and Transfer Reactions Using an Evolutionary Approach. PMID:34770995
Whole-Genome Sequencing, Phylogenetic and Genomic Analysis of Lactiplantibacillus pentosus L33, a Potential Probiotic Strain Isolated From Fermented Sausages. PMID:34764945
Aspergillus nidulans AmyG Functions as an Intracellular α-Amylase to Promote α-Glucan Synthesis. PMID:34756063
Structure-function analysis of two closely related cutinases from Thermobifida cellulosilytica. PMID:34755331
The transposable element-rich genome of the cereal pest Sitophilus oryzae. PMID:34749730
Drought Stress Triggers Shifts in the Root Microbial Community and Alters Functional Categories in the Microbial Gene Pool. PMID:34745045
A survey of substrate specificity among Auxiliary Activity Family 5 copper radical oxidases. PMID:34738149
Metagenomics Analysis Reveals Compositional and Functional Differences in the Gut Microbiota of Red Swamp Crayfish, Procambarus clarkii, Grown on Two Different Culture Environments. PMID:34733252
The chitinolytic activity of the Curtobacterium sp. isolated from field-grown soybean and analysis of its genome sequence. PMID:34731210
Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis. PMID:34726178
Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of the Bacillus-Plant Mutualistic Interaction. PMID:34724831
Genome information of the cellulolytic soil actinobacterium Isoptericola dokdonensis DS-3 and comparative genomic analysis of the genus Isoptericola. PMID:34724179
Two GH16 Endo-1,3-β-D-Glucanases from Formosa agariphila and F. algae Bacteria Have Complete Different Modes of Laminarin Digestion. PMID:34724141
Oxidized Product Profiles of AA9 Lytic Polysaccharide Monooxygenases Depend on the Type of Cellulose. PMID:34722005
Prokaryotic Genome Annotation. PMID:34718997
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. PMID:34718728
Insights into Broad-Specificity Starch Modification from the Crystal Structure of Limosilactobacillus Reuteri NCC 2613 4,6-α-Glucanotransferase GtfB. PMID:34708648
Shedding Light on Microbial "Dark Matter": Insights Into Novel Cloacimonadota and Omnitrophota From an Antarctic Lake. PMID:34707591
Discovery of a Novel Glucuronan Lyase System in Trichoderma parareesei. PMID:34705548
Capsicumicine, a New Bioinspired Peptide from Red Peppers Prevents Staphylococcal Biofilm In Vitro and In Vivo via a Matrix Anti-Assembly Mechanism of Action. PMID:34704807
An overview on current molecular tools for heterologous gene expression in Trichoderma. PMID:34702369
The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19. PMID:34699529
Polysaccharide-Bacteria Interactions From the Lens of Evolutionary Ecology. PMID:34690949
The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley. PMID:34686763
Discovery of a Kojibiose Hydrolase by Analysis of Specificity-Determining Correlated Positions in Glycoside Hydrolase Family 65. PMID:34684901
The Ectodomains of rBAT and 4F2hc Are Fake or Orphan α-Glucosidases. PMID:34684812
Structure and Topology Prediction of Phage Adhesion Devices Using AlphaFold2: The Case of Two Oenococcus oeni Phages. PMID:34683471
The Predatory Myxobacterium Citreicoccus inhibens gen. nov. sp. nov. Showed Antifungal Activity and Bacteriolytic Property against Phytopathogens. PMID:34683458
Characterization of Fungal FAD-Dependent AA3_2 Glucose Oxidoreductases from Hitherto Unexplored Phylogenetic Clades. PMID:34682294
Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica. PMID:34682274
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. PMID:34682252
Structural Insight into a Yeast Maltase-The BaAG2 from Blastobotrys adeninivorans with Transglycosylating Activity. PMID:34682239
Comparative Genomic Analysis of Bifidobacterium bifidum Strains Isolated from Different Niches. PMID:34680899
NleB/SseK-catalyzed arginine-glycosylation and enteropathogen virulence are finely tuned by a single variable position contiguous to the catalytic machinery. PMID:34667584
Functional glyco-metagenomics elucidates the role of glycan-related genes in environments. PMID:34663219
Surface Glycans Regulate Salmonella Infection-Dependent Directional Switch in Macrophage Galvanotaxis Independent of NanH. PMID:34662214
Diversity of Marine 1,3-Xylan-Utilizing Bacteria and Characters of Their Extracellular 1,3-Xylanases. PMID:34659148
Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis. PMID:34650545
Computer-aided engineering of a branching sucrase for the glucodiversification of a tetrasaccharide precursor of S. flexneri antigenic oligosaccharides. PMID:34645865
Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance. PMID:34645820
Chitinase Chit62J4 Essential for Chitin Processing by Human Microbiome Bacterium Clostridium paraputrificum J4. PMID:34641521
Cellular and Molecular Engineering of Glycan Sialylation in Heterologous Systems. PMID:34641494
Distinct Regions of the Haloferax volcanii Dolichol Phosphate-Mannose Synthase AglD Mediate the Assembly and Subsequent Processing of the Lipid-Linked Mannose. PMID:34633871
Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis. PMID:34620880
Quantifying Oxidation of Cellulose-Associated Glucuronoxylan by Two Lytic Polysaccharide Monooxygenases from Neurospora crassa. PMID:34613755
Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes. PMID:34613753
Synthetic Strategies for FRET-Enabled Carbohydrate Active Enzyme Probes. PMID:34611873
An Interactive View of Glycosylation. PMID:34611864
Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle. PMID:34609172
Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms. PMID:34605764
Genome of Ganoderma Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for Ganoderma tsugae. PMID:34603250
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale. PMID:34597405
Characterization and Modeling of Thermostable GH50 Agarases from Microbulbifer elongatus PORT2. PMID:34595592
Leveraging diet to engineer the gut microbiome. PMID:34580480
Mapping the glycosyltransferase fold landscape using interpretable deep learning. PMID:34580305
In Silico Analysis of Fungal and Chloride-Dependent α-Amylases within the Family GH13 with Identification of Possible Secondary Surface-Binding Sites. PMID:34577174
Enhanced Activity by Genetic Complementarity: Heterologous Secretion of Clostridial Cellulases by Bacillus licheniformis and Bacillus velezensis. PMID:34577096
Glucosylation of (±)-Menthol by Uridine-Diphosphate-Sugar Dependent Glucosyltransferases from Plants. PMID:34576983
Comparative Genomics and Specific Functional Characteristics Analysis of Lactobacillus acidophilus. PMID:34576887
Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota. PMID:34576801
Exopolysaccharides Producing Lactic Acid Bacteria in Wine and Other Fermented Beverages: For Better or for Worse? PMID:34574312
Amylomaltases in Extremophilic Microorganisms. PMID:34572549
Design, Synthesis and Structural Analysis of Glucocerebrosidase Imaging Agents. PMID:34570911
Improved draft reference genome for the Glassy-winged Sharpshooter (Homalodisca vitripennis), a vector for Pierce's disease. PMID:34568917
Kinetic Characterization of a Putatively Chitin-Active LPMO Reveals a Preference for Soluble Substrates and Absence of Monooxygenase Activity. PMID:34567832
Carnitine is a pharmacological allosteric chaperone of the human lysosomal α-glucosidase. PMID:34565280
A New Subfamily of Glycoside Hydrolase Family 30 with Strict Xylobiohydrolase Function. PMID:34557520
Thermostability Measurement of an α-Glucosidase Using a Classical Activity-based Assay and a Novel Thermofluor Method. PMID:34541099
PlantGSAD: a comprehensive gene set annotation database for plant species. PMID:34534340
Engineering the substrate binding site of the hyperthermostable archaeal endo-β-1,4-galactanase from Ignisphaera aggregans. PMID:34530892
Chromosome-Level Genome Sequence of Aspergillus chevalieri M1, Isolated from Katsuobushi. PMID:34528823
Insights into the Lignocellulose-Degrading Enzyme System of Humicola grisea var. thermoidea Based on Genome and Transcriptome Analysis. PMID:34523973
Bacterial chitinase biochemical properties, immobilization on zinc oxide (ZnO) nanoparticle and its effect on Sitophilus zeamais as a potential insecticide. PMID:34519907
Metagenomics Unveils Posidonia oceanica "Banquettes" as a Potential Source of Novel Bioactive Compounds and Carbohydrate Active Enzymes (CAZymes). PMID:34519521
Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. PMID:34518545
Ectomycorrhizal access to organic nitrogen mediates CO2 fertilization response in a dominant temperate tree. PMID:34518539
The Role of Arabinogalactan Type II Degradation in Plant-Microbe Interactions. PMID:34512607
Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics. PMID:34512586
The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. PMID:34512564
Analysis of the Genome Sequence of Strain GiC-126 of Gloeostereum incarnatum with Genetic Linkage Map. PMID:34512084
Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions. PMID:34507539
The Role of Glycoside Hydrolases in Phytopathogenic Fungi and Oomycetes Virulence. PMID:34502268
Structural Insights in Mammalian Sialyltransferases and Fucosyltransferases: We Have Come a Long Way, but It Is Still a Long Way Down. PMID:34500643
Chromosome-Level Genome Sequence of Aspergillus puulaauensis MK2, a Fungus Isolated from a Dead Hard Tick. PMID:34498921
Mucin-Type O-GalNAc Glycosylation in Health and Disease. PMID:34495529
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms. PMID:34493810
Characterization of a novel multidomain CE15-GH8 enzyme encoded by a polysaccharide utilization locus in the human gut bacterium Bacteroides eggerthii. PMID:34480044
GOLPH3 and GOLPH3L are broad-spectrum COPI adaptors for sorting into intra-Golgi transport vesicles. PMID:34473204
Whole genome sequences of two Trichophyton indotineae clinical isolates from India emerging as threats during therapeutic treatment of dermatophytosis. PMID:34458064
Genomic Analysis and Secondary Metabolites Production of the Endophytic Bacillus velezensis Bvel1: A Biocontrol Agent against Botrytis cinerea Causing Bunch Rot in Post-Harvest Table Grapes. PMID:34451760
Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in Medicago truncatula. PMID:34451684
Computational models in the service of X-ray and cryo-electron microscopy structure determination. PMID:34449113
Metagenome-assembled genome of a Chitinophaga sp. and its potential in plant biomass degradation, as well of affiliated Pandoraea and Labrys species. PMID:34448059
Hemicellulosic biomass conversion by Moroccan hot spring Bacillus paralicheniformis CCMM B940 evidenced by glycoside hydrolase activities and whole genome sequencing. PMID:34447652
Architecture Insight of Bifidobacterial α-L-Fucosidases. PMID:34445166
Comparative Genomics Analyses Reveal the Differences between B. longum subsp. infantis and B. longum subsp. longum in Carbohydrate Utilisation, CRISPR-Cas Systems and Bacteriocin Operons. PMID:34442792
Bacterial α-Glucan and Branching Sucrases from GH70 Family: Discovery, Structure-Function Relationship Studies and Engineering. PMID:34442685
Integrated Phenotypic-Genotypic Analysis of Latilactobacillus sakei from Different Niches. PMID:34441495
Oxidative Power: Tools for Assessing LPMO Activity on Cellulose. PMID:34439765
A Putative Lignin Copper Oxidase from Trichoderma reesei. PMID:34436182
The Cultivation Method Affects the Transcriptomic Response of Aspergillus niger to Growth on Sugar Beet Pulp. PMID:34431718
Evaluation of Ammonia Pretreatment for Enzymatic Hydrolysis of Sugarcane Bagasse to Recover Xylooligosaccharides. PMID:34429695
Characterization of Acetylxylan Esterase from White-Rot Fungus Irpex lacteus. PMID:34429691
Akkermansia muciniphila Exerts Strain-Specific Effects on DSS-Induced Ulcerative Colitis in Mice. PMID:34422681
Chitosan Oligosaccharide Production Potential of Mitsuaria sp. C4 and Its Whole-Genome Sequencing. PMID:34421850
A review of alpha-glucosidase inhibitors from plants as potential candidates for the treatment of type-2 diabetes. PMID:34421444
An essential, kinetoplastid-specific GDP-Fuc: β-D-Gal α-1,2-fucosyltransferase is located in the mitochondrion of Trypanosoma brucei. PMID:34410224
North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches. PMID:34404489
Sialidase and Sialyltransferase Inhibitors: Targeting Pathogenicity and Disease. PMID:34395532
Pseudomonas nanhaiensis sp. nov., a lipase-producing bacterium isolated from deep-sea sediment of the South China Sea. PMID:34392431
A broadly active fucosyltransferase LmjFUT1 whose mitochondrial localization and activity are essential in parasitic Leishmania. PMID:34385330
Phytophthora capsici CBM1-containing protein CBP3 is an apoplastic effector with plant immunity-inducing activity. PMID:34382319
The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis. PMID:34379807
Characterization of β-glucosidase of Lactobacillus plantarum FSO1 and Candida pelliculosa L18 isolated from traditional fermented green olive. PMID:34370148
Side Chain Conformation Restriction in the Catalysis of Glycosidic Bond Formation by Leloir Glycosyltransferases, Glycoside Phosphorylases, and Transglycosidases. PMID:34367723
Sphingobacterium pedocola sp. nov. a novel halotolerant bacterium isolated from agricultural soil. PMID:34363180
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms. PMID:34361929
Composition and Functions of the Gut Microbiome in Pediatric Obesity: Relationships with Markers of Insulin Resistance. PMID:34361925
Characterization of Two α-l-Arabinofuranosidases from Acetivibrio mesophilus and Their Synergistic Effect in Degradation of Arabinose-Containing Substrates. PMID:34361903
Catalytic Diversity of GH30 Xylanases. PMID:34361682
Role and Evolution of the Extracellular Matrix in the Acquisition of Complex Multicellularity in Eukaryotes: A Macroalgal Perspective. PMID:34356075
Innovative Preparation of Biopharmaceuticals Using Transglycosylation Activity of Microbial Endoglycosidases. PMID:34354540
Microbial α-L-Rhamnosidases of Glycosyl Hydrolase Families GH78 and GH106 Have Broad Substrate Specificities toward α-L-Rhamnosyl- and α-L-Mannosyl-Linkages. PMID:34354534
Thermostable Mutants of Glycoside Hydrolase Family 6 Cellobiohydrolase from the Basidiomycete Phanerochaete chrysosporium. PMID:34354533
Analysis of Transglucosylation Products of Aspergillus niger α-Glucosidase that Catalyzes the Formation of α-1,2- and α-1,3-Linked Oligosaccharides. PMID:34354527
A Novel α-Glucosidase of the Glycoside Hydrolase Family 31 from Aspergillus sojae. PMID:34354523
Functional Characterization of the GH10 and GH11 Xylanases from Streptomyces olivaceoviridis E-86 Provide Insights into the Advantage of GH11 Xylanase in Catalyzing Biomass Degradation. PMID:34354517
4-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 α-Glucuronidase from Bacillus halodurans C-125. PMID:34354504
Characterization of Three Fungal Isomaltases Belonging to Glycoside Hydrolase Family 13 That Do not Show Transglycosylation Activity. PMID:34354490
Isolation and Characterization of Two Types of Xyloglucanases from a Phytopathogenic Fungus, Verticillium dahliae. PMID:34354476
A Surface Loop in the N-Terminal Domain of Pedobacter heparinus Heparin Lyase II is Important for Activity. PMID:34354475
Antimicrobial susceptibilities and comparative whole genome analysis of two isolates of the probiotic bacterium Lactiplantibacillus plantarum, strain ATCC 202195. PMID:34354117
GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases. PMID:34351427
Physicochemical Properties of Extracellular Polymeric Substances Produced by Three Bacterial Isolates From Biofouled Reverse Osmosis Membranes. PMID:34349735
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. PMID:34348651
Structure of a C1/C4-oxidizing AA9 lytic polysaccharide monooxygenase from the thermophilic fungus Malbranchea cinnamomea. PMID:34342275
Sulfation of Arabinogalactan Proteins Confers Privileged Nutrient Status to Bacteroides plebeius. PMID:34340552
Captive Common Marmosets (Callithrix jacchus) Are Colonized throughout Their Lives by a Community of Bifidobacterium Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches. PMID:34340536
Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation. PMID:34338934
Transcriptomic markers of fungal growth, respiration and carbon-use efficiency. PMID:34338746
GH18 endo-β-N-acetylglucosaminidases use distinct mechanisms to process hybrid-type N-linked glycans. PMID:34324829
The Fish Pathogen Aliivibrio salmonicida LFI1238 Can Degrade and Metabolize Chitin despite Gene Disruption in the Chitinolytic Pathway. PMID:34319813
Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola". PMID:34313495
Deciphering Symbiotic Interactions of "Candidatus Aenigmarchaeota" with Inferred Horizontal Gene Transfers and Co-occurrence Networks. PMID:34313464
Variations in Microbial Diversity and Metabolite Profiles of Female Landrace Finishing Pigs With Distinct Feed Efficiency. PMID:34307537
Bioinformatics analysis of PAE family in Populus trichocarpa and responsiveness to carbon and nitrogen treatment. PMID:34295610
Chromosome-Level Genome Sequence of the Black Koji Fungus Aspergillus luchuensis RIB2601. PMID:34292062
Enzymatically synthesized exopolysaccharide of a probiotic strain Leuconostoc mesenteroides NTM048 shows adjuvant activity to promote IgA antibody responses. PMID:34288820
Bacteria associated with wood tissues of Esca-diseased grapevines: functional diversity and synergy with Fomitiporia mediterranea to degrade wood components. PMID:34288352
Comparative Genomics Reveals Thermal Adaptation and a High Metabolic Diversity in "Candidatus Bathyarchaeia". PMID:34282939
Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease. PMID:34281401
Resistant starch, microbiome, and precision modulation. PMID:34275431
Community structure and metabolic potentials of the traditional rice beer starter 'emao'. PMID:34272462
Polyphenol-Mediated Gut Microbiota Modulation: Toward Prebiotics and Further. PMID:34268328
Performance of Regression Models as a Function of Experiment Noise. PMID:34262264
Diploidy within a Haploid Genus of Entomopathogenic Fungi. PMID:34247231
Progressing Plastics Circularity: A Review of Mechano-Biocatalytic Approaches for Waste Plastic (Re)valorization. PMID:34239864
The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger. PMID:34236481
Mixed Linkage β-1,3/1,4-Glucan Oligosaccharides Induce Defense Responses in Hordeum vulgare and Arabidopsis thaliana. PMID:34220903
Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition. PMID:34220772
Analysis and application of a suite of recombinant endo-β(1,3)-D-glucanases for studying fungal cell walls. PMID:34217291
CAZyme prediction in ascomycetous yeast genomes guides discovery of novel xylanolytic species with diverse capacities for hemicellulose hydrolysis. PMID:34215291
Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes. PMID:34210366
Genomic Characteristics and Comparative Genomics Analysis of Two Chinese Corynespora cassiicola Strains Causing Corynespora Leaf Fall (CLF) Disease. PMID:34208763
Building a Flower: The Influence of Cell Wall Composition on Flower Development and Reproduction. PMID:34206830
Crystal structure of a homotrimeric verrucomicrobial exo-β-1,4-mannosidase active in the hindgut of the wood-feeding termite Reticulitermes flavipes. PMID:34195602
Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors. PMID:34193873
METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses. PMID:34184911
Structure-function analysis of a new PL17 oligoalginate lyase from the marine bacterium Zobellia galactanivorans DsijT. PMID:34184062
Structural and Functional Analysis of a Multimodular Hyperthermostable Xylanase-Glucuronoyl Esterase from Caldicellulosiruptor kristjansonii. PMID:34180241
Characterization of a Hyaluronic Acid Utilization Locus and Identification of Two Hyaluronate Lyases in a Marine Bacterium Vibrio alginolyticus LWW-9. PMID:34177877
Development of an active site titration reagent for α-amylases. PMID:34163800
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans. PMID:34163075
Caloric restriction disrupts the microbiota and colonization resistance. PMID:34163067
Physical constraints and functional plasticity of cellulases. PMID:34158485
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches. PMID:34154659
Microbial bioprospecting for lignocellulose degradation at a unique Greek environment. PMID:34141913
Ancient origin of fucosylated xyloglucan in charophycean green algae. PMID:34140625
Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men. PMID:34140026
Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome. PMID:34131152
Molecular cloning, characterization and expression analysis of three key starch synthesis-related genes from the bulb of a rare lily germplasm, Lilium brownii var. giganteum. PMID:34128371
Biosynthesis of a sulfated exopolysaccharide, synechan, and bloom formation in the model cyanobacterium Synechocystis sp. strain PCC 6803. PMID:34127188
The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion. PMID:34126770
Anaerobic Microbiota Derived from the Upper Airways Impact Staphylococcus aureus Physiology. PMID:34125598
Characterization of an α-Glucosidase Enzyme Conserved in Gardnerella spp. Isolated from the Human Vaginal Microbiome. PMID:34124938
Chromatographic Assays for the Enzymatic Degradation of Chitin. PMID:34124313
Microbial Glycoside Hydrolases in the First Year of Life: An Analysis Review on Their Presence and Importance in Infant Gut. PMID:34122357
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants. PMID:34118976
Biochemical and Functional Characterization of GALT8, an Arabidopsis GT31 β-(1,3)-Galactosyltransferase That Influences Seedling Development. PMID:34113372
Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities. PMID:34113324
Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments. PMID:34112968
A thermostable glycosyltransferase from Paenibacillus polymyxa NJPI29: recombinant expression, characterization, and application in synthesis of glycosides. PMID:34109099
Phylogenetic, functional and structural characterization of a GH10 xylanase active at extreme conditions of temperature and alkalinity. PMID:34093984
Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172. PMID:34082802
Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides. PMID:34082717
A Comparative Study to Decipher the Structural and Dynamics Determinants Underlying the Activity and Thermal Stability of GH-11 Xylanases. PMID:34073139
A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material. PMID:34071235
Consolidated Bioprocessing: Synthetic Biology Routes to Fuels and Fine Chemicals. PMID:34069865
Dietary Fibre Modulates the Gut Microbiota. PMID:34068353
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits. PMID:34067621
Identification and functional analysis of a galactosyltransferase capable of cholesterol glycolipid formation in the Lyme disease spirochete Borrelia burgdorferi. PMID:34061884
Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii. PMID:34060910
Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. PMID:34059129
Improvements of the productivity and saccharification efficiency of the cellulolytic β-glucosidase D2-BGL in Pichia pastoris via directed evolution. PMID:34059121
Active site architecture of an acetyl xylan esterase indicates a novel cold adaptation strategy. PMID:34058201
Peters plus syndrome mutations affect the function and stability of human β1,3-glucosyltransferase. PMID:34058199
Maize Endochitinase Expression in Response to Fall Armyworm Herbivory. PMID:34056671
Native to designed: microbial -amylases for industrial applications. PMID:34046253
Characterization of SdGA, a cold-adapted glucoamylase from Saccharophagus degradans. PMID:34041001
Genome sequence and transcriptome profiles of pathogenic fungus Paecilomyces penicillatus reveal its interactions with edible fungus Morchella importuna. PMID:34025947
Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale. PMID:34022966
From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes. PMID:34020690
Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. PMID:34006629
Characterization of a new bifunctional endo-1,4-β-xylanase/esterase found in the rumen metagenome. PMID:34001974
Reconstruction of ancient microbial genomes from the human gut. PMID:33981035
Dissecting Cellular Function and Distribution of β-Glucosidases in Trichoderma reesei. PMID:33975944
β-Glucan phosphorylases in carbohydrate synthesis. PMID:33970317
A putative novel starch-binding domain revealed by in silico analysis of the N-terminal domain in bacterial amylomaltases from the family GH77. PMID:33968573
High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics. PMID:33968004
Bacterial α-diglucoside metabolism: perspectives and potential for biotechnology and biomedicine. PMID:33961116
Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis. PMID:33959381
Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response. PMID:33952202
Structural basis of chitin utilization by a GH20 β-N-acetylglucosaminidase from Vibrio campbellii strain ATCC BAA-1116. PMID:33950022
Recombinant production of two xylanase-somatostatin fusion proteins retaining somatostatin immunogenicity and xylanase activity in Pichia pastoris. PMID:33939024
Plasmodium chitinases: revisiting a target of transmission-blockade against malaria. PMID:33934433
A Glycolipid Glycosyltransferase with Broad Substrate Specificity from the Marine Bacterium "Candidatus Pelagibacter sp." Strain HTCC7211. PMID:33931419
Indolyl Septanoside Synthesis for In Vivo Screening of Bacterial Septanoside Hydrolases. PMID:33925857
Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia. PMID:33924031
Antarctic Rahnella inusitata: A Producer of Cold-Stable β-Galactosidase Enzymes. PMID:33923711
Deconstruction of Lignin: From Enzymes to Microorganisms. PMID:33921125
Gene-Phenotype Associations Involving Human-Residential Bifidobacteria (HRB) Reveal Significant Species- and Strain-Specificity in Carbohydrate Catabolism. PMID:33919102
Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts. PMID:33919051
The Secretomes of Aspergillus japonicus and Aspergillus terreus Supplement the Rovabio® Enzyme Cocktail for the Degradation of Soybean Meal for Animal Feed. PMID:33917144
Phylogenomic Insights into Distribution and Adaptation of Bdellovibrionota in Marine Waters. PMID:33916768
Recent Advances in Screening Methods for the Functional Investigation of Lytic Polysaccharide Monooxygenases. PMID:33912540
CAZymes in Maribacter dokdonensis 62-1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain. PMID:33912144
Affinibrenneria salicis gen. nov. sp. nov. isolated from Salix matsudana bark canker. PMID:33903975
Potential Applications of Endo-β-N-Acetylglucosaminidases From Bifidobacterium longum Subspecies infantis in Designing Value-Added, Next-Generation Infant Formulas. PMID:33898500
Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome. PMID:33898497
Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. PMID:33893309
Metatranscriptomic analyses reveal ruminal pH regulates fiber degradation and fermentation by shifting the microbial community and gene expression of carbohydrate-active enzymes. PMID:33892824
Marine Polysaccharides: Occurrence, Enzymatic Degradation and Utilization. PMID:33890358
Development of Non-Hydrolysable Oligosaccharide Activity-Based Inactivators for Endoglycanases: A Case Study on α-1,6 Mannanases. PMID:33878235
An insight into transcriptome of Cyathus bulleri for lignocellulase expression on wheat bran. PMID:33877388
Genome sequencing and comparative genomic analysis of highly and weakly aggressive strains of Sclerotium rolfsii, the causal agent of peanut stem rot. PMID:33863285
Quantitative Measurement of Mucolytic Enzymes in Fecal Samples. PMID:33855117
Mutation of cysteine residues increases heterologous expression of peach expansin in the methylotrophic yeast Pichia pastoris. PMID:33850426
Preface to the special issue "Approaches for strategies of mechanical optimization in plants". PMID:33850425
Whole-genome sequence-based analysis of the Paenibacillus aquistagni strain DK1, a polyethylene-degrading bacterium isolated from landfill. PMID:33839943
Functional diversity of three tandem C-terminal carbohydrate-binding modules of a β-mannanase. PMID:33838183
Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs. PMID:33837197
Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications. PMID:33830329
Novel clostridial cell-surface hemicellulose-binding CBM3 proteins. PMID:33830074
Regioselective chemoenzymatic syntheses of ferulate conjugates as chromogenic substrates for feruloyl esterases. PMID:33828614
Metabolic capabilities mute positive response to direct and indirect impacts of warming throughout the soil profile. PMID:33828081
Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes. PMID:33827423
Crystal structures of β-1,4-N-acetylglucosaminyltransferase 2: structural basis for inherited muscular dystrophies. PMID:33825709
Microbiota, renal disease and renal transplantation. PMID:33816144
Transglycosylation abilities of β-d-galactosidases from GH family 2. PMID:33816045
Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase. PMID:33815691
Phylogenetic Distribution of Polysaccharide-Degrading Enzymes in Marine Bacteria. PMID:33815349
Phylogenomics of Plant-Associated Botryosphaeriaceae Species. PMID:33815343
Molecular profiling of microbial community structure and their CAZymes via metagenomics, from Tsomgo lake in the Eastern Himalayas. PMID:33813595
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T. PMID:33811026
Transglycosylation Activity of Engineered Bifidobacterium Lacto-N-Biosidase Mutants at Donor Subsites for Lacto-N-Tetraose Synthesis. PMID:33810098
Unravelling Regioselectivity of Leuconostoc citreum ABK-1 Alternansucrase by Acceptor Site Engineering. PMID:33810084
Evolution of Fungal Carbohydrate-Active Enzyme Portfolios and Adaptation to Plant Cell-Wall Polymers. PMID:33807546
Transcript Regulation of the Recoded Archaeal α-l-Fucosidase In Vivo. PMID:33806142
Xyloglucan Oligosaccharides Hydrolysis by Exo-Acting Glycoside Hydrolases from Hyperthermophilic Microorganism Saccharolobus solfataricus. PMID:33805072
Expression and Characterization of a Cold-Adapted Alginate Lyase with Exo/Endo-Type Activity from a Novel Marine Bacterium Alteromonas portus HB161718T. PMID:33802659
Acetan and Acetan-Like Polysaccharides: Genetics, Biosynthesis, Structure, and Viscoelasticity. PMID:33799945
New Method for Identifying Fungal Kingdom Enzyme Hotspots from Genome Sequences. PMID:33799907
Complete genome sequence of the Pseudomonas oleovorans strain ODT-83 isolated from oyster. PMID:33797591
The Impact of Migration on the Gut Metagenome of South Asian Canadians. PMID:33794735
Comparative genomic and secretomic characterisation of endophytic Bacillus velezensis LC1 producing bioethanol from bamboo lignocellulose. PMID:33792738
A protocol combining breath testing and ex vivo fermentations to study the human gut microbiome. PMID:33786457
Mechanistic Insights into Substrate Recognition and Catalysis of a New Ulvan Lyase of Polysaccharide Lyase Family 24. PMID:33771786
Genome-wide identification of BAM genes in grapevine (Vitis vinifera L.) and ectopic expression of VvBAM1 modulating soluble sugar levels to improve low-temperature tolerance in tomato. PMID:33771117
Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates. PMID:33763411
Opportunistic bacteria with reduced genomes are effective competitors for organic nitrogen compounds in coastal dinoflagellate blooms. PMID:33762013
Enzymatic degradation of xyloglucans by Aspergillus species: a comparative view of this genus. PMID:33760931
Retracing Storage Polysaccharide Evolution in Stramenopila. PMID:33747010
Soil Metagenomics Reveals Effects of Continuous Sugarcane Cropping on the Structure and Functional Pathway of Rhizospheric Microbial Community. PMID:33746921
An overall look at insect chitin deacetylases: Promising molecular targets for developing green pesticides. PMID:33746545
A perspective on the PDB's impact on the field of glycobiology. PMID:33744289
Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources. PMID:33743779
A haustorial-expressed lytic polysaccharide monooxygenase from the cucurbit powdery mildew pathogen Podosphaera xanthii contributes to the suppression of chitin-triggered immunity. PMID:33742545
MultiPhATE2: code for functional annotation and comparison of phage genomes. PMID:33734357
A highly contiguous reference genome assembly for Colletotrichum falcatum pathotype Cf08 causing red rot disease in sugarcane. PMID:33732569
Global mapping of glycosylation pathways in human-derived cells. PMID:33730547
Bagasse minority pathway expression: Real time study of GH2 β-mannosidases from bacteroidetes. PMID:33730062
High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids. PMID:33727392
The Predicted Mannosyltransferase GT69-2 Antagonizes RFW-1 To Regulate Cell Fusion in Neurospora crassa. PMID:33727349
Two UGT84A Family Glycosyltransferases Regulate Phenol, Flavonoid, and Tannin Metabolism in Juglans regia (English Walnut). PMID:33719298
Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78Å resolution. PMID:33711051
Comparative genome analyses suggest a hemibiotrophic lifestyle and virulence differences for the beech bark disease fungal pathogens Neonectria faginata and Neonectria coccinea. PMID:33693679
Expression, Characterization and Its Deinking Potential of a Thermostable Xylanase From Planomicrobium glaciei CHR43. PMID:33681158
Identification and characterization of a novel glucomannanase from Paenibacillus polymyxa. PMID:33680694
Cracking the "Sugar Code": A Snapshot of N- and O-Glycosylation Pathways and Functions in Plants Cells. PMID:33679857
Approaches to Investigate Selective Dietary Polysaccharide Utilization by Human Gut Microbiota at a Functional Level. PMID:33679661
Fabry Disease: Molecular Basis, Pathophysiology, Diagnostics and Potential Therapeutic Directions. PMID:33673160
Current Views on the Roles of O-Glycosylation in Controlling Notch-Ligand Interactions. PMID:33670724
Structure and evolution of the bifidobacterial carbohydrate metabolism proteins and enzymes. PMID:33666221
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales). PMID:33664789
Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments. PMID:33657378
Dysbiosis in Metabolic Genes of the Gut Microbiomes of Patients with an Ileo-anal Pouch Resembles That Observed in Crohn's Disease. PMID:33653942
Genome-Driven Discovery of Enzymes with Industrial Implications from the Genus Aneurinibacillus. PMID:33652876
Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. PMID:33649555
Editorial: CAZymes in Biorefinery: From Genes to Application. PMID:33644017
Complete genome sequencing of Peyer's patches-derived Lactobacillus taiwanensis CLG01, a potential probiotic with antibacterial and immunomodulatory activity. PMID:33639835
Complete Genome Sequence of Pedobacter sp. PAMC26386 and Their Low Temperature Application in Arabinose-containing Polysaccharides Degradation. PMID:33638002
AtFUT4 and AtFUT6 Are Arabinofuranose-Specific Fucosyltransferases. PMID:33633757
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. PMID:33623002
Molecular origins of reduced activity and binding commitment of processive cellulases and associated carbohydrate-binding proteins to cellulose III. PMID:33610545
Diatom fucan polysaccharide precipitates carbon during algal blooms. PMID:33608542
Metagenomic Insights into the Metabolic and Ecological Functions of Abundant Deep-Sea Hydrothermal Vent DPANN Archaea. PMID:33608296
Dietary Inulin Increases Lactiplantibacillus plantarum Strain Lp900 Persistence in Rats Depending on the Dietary-Calcium Level. PMID:33608291
Co-production of Xylooligosaccharides and Xylose From Poplar Sawdust by Recombinant Endo-1,4-β-Xylanase and β-Xylosidase Mixture Hydrolysis. PMID:33598452
Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. PMID:33587952
Rv1717 Is a Cell Wall - Associated β-Galactosidase of Mycobacterium tuberculosis That Is Involved in Biofilm Dispersion. PMID:33584576
A Pipeline towards the Biochemical Characterization of the Arabidopsis GT14 Family. PMID:33572987
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles. PMID:33571448
Identification of the relationship between the gut microbiome and feed efficiency in a commercial pig cohort. PMID:33570553
Comparative Genomic Analysis of Lactiplantibacillus plantarum Isolated from Different Niches. PMID:33567604
Structure-based substrate specificity analysis of GH11 xylanase from Streptomyces olivaceoviridis E-86. PMID:33564921
3D Structural Insights into β-Glucans and Their Binding Proteins. PMID:33557270
Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on β-1,3 and β-1,4 glycosidic bonds. PMID:33556371
Multifunctional cellulases are potent, versatile tools for a renewable bioeconomy. PMID:33550093
Biotechnology and bioengineering of pullulanase: state of the art and perspectives. PMID:33547538
Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides besseyi. PMID:33540794
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay. PMID:33538380
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. PMID:33526884
A Transcriptomic Approach Provides Insights on the Mycorrhizal Symbiosis of the Mediterranean Orchid Limodorum abortivum in Nature. PMID:33525474
Exploring the impact of gut microbiota and diet on breast cancer risk and progression. PMID:33521932
Not All Fibers Are Born Equal; Variable Response to Dietary Fiber Subtypes in IBD. PMID:33520902
The PhoPQ Two-Component System Is the Major Regulator of Cell Surface Properties, Stress Responses and Plant-Derived Substrate Utilisation During Development of Pectobacterium versatile-Host Plant Pathosystems. PMID:33519782
Genome Sequencing Analysis of Scleromitrula shiraiana, a Causal Agent of Mulberry Sclerotial Disease With Narrow Host Range. PMID:33519746
Complete genome sequence of lovastatin producer Aspergillus terreus ATCC 20542 and evaluation of genomic diversity among A. terreus strains. PMID:33515286
Estimating the accuracy of calculated electron paramagnetic resonance hyperfine couplings for a lytic polysaccharide monooxygenase. PMID:33510861
Redirecting substrate regioselectivity using engineered ΔN123-GBD-CD2 branching sucrases for the production of pentasaccharide repeating units of S. flexneri 3a, 4a and 4b haptens. PMID:33510212
Draft Genome Sequence of the Wild Edible Mushroom Pleurotus ostreatoroseus DPUA 1720. PMID:33509982
CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases. PMID:33505839
Characterisation of Cellulose Synthase Like F6 (CslF6) Mutants Shows Altered Carbon Metabolism in β-D-(1,3;1,4)-Glucan Deficient Grain in Brachypodium distachyon. PMID:33505412
Genome-Wide Identification and Analysis of Chitinase GH18 Gene Family in Mycogone perniciosa. PMID:33505368
Ecological specificity of the metagenome in a set of lower termite species supports contribution of the microbiome to adaptation of the host. PMID:33499940
Activity-Based Protein Profiling of Retaining α-Amylases in Complex Biological Samples. PMID:33497208
Strategies and Tactics for the Development of Selective Glycan-Binding Proteins. PMID:33497192
Four cellulose-active lytic polysaccharide monooxygenases from Cellulomonas species. PMID:33485381
Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria. PMID:33482928
Genome-based engineering of ligninolytic enzymes in fungi. PMID:33478513
Novel nucleocytoplasmic protein O-fucosylation by SPINDLY regulates diverse developmental processes in plants. PMID:33476897
Glycoconjugate pathway connections revealed by sequence similarity network analysis of the monotopic phosphoglycosyl transferases. PMID:33472976
Structure-function analysis of pectate lyase Pel3 reveals essential facets of protein recognition by the bacterial type 2 secretion system. PMID:33465378
Characterization of efficient xylanases from industrial-scale pulp and paper wastewater treatment microbiota. PMID:33464408
A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis. PMID:33454012
Heme-binding enables allosteric modulation in an ancient TIM-barrel glycosidase. PMID:33452262
Resources and Methods for Engineering "Designer" Glycan-Binding Proteins. PMID:33450899
Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations. PMID:33446650
Recombinant expression, purification, and characterization of an α-amylase from Massilia timonae. PMID:33442512
Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species. PMID:33440901
Effects of Dysbiosis and Dietary Manipulation on the Digestive Microbiota of a Detritivorous Arthropod. PMID:33440837
Role of metagenomics in prospecting novel endoglucanases, accentuating functional metagenomics approach in second-generation biofuel production: a review. PMID:33437563
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition. PMID:33436515
Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community. PMID:33436509
Genome-Wide Identification of Banana Csl Gene Family and Their Different Responses to Low Temperature between Chilling-Sensitive and Tolerant Cultivars. PMID:33435621
Fungal Treatment for the Valorization of Technical Soda Lignin. PMID:33435491
Oxylipins are implicated as communication signals in tomato-root-knot nematode (Meloidogyne javanica) interaction. PMID:33431951
XXYLT1 methylation contributes to the occurrence of lung adenocarcinoma: Methylation and lung adenocarcinoma. PMID:33429795
Metagenomic identification, purification and characterisation of the Bifidobacterium adolescentis BgaC β-galactosidase. PMID:33427933
Isolation, expression, and characterization of raw starch degrading α-amylase from a marine lake Bacillus megaterium NL3. PMID:33426327
Characterization of Metagenome-Assembled Genomes and Carbohydrate-Degrading Genes in the Gut Microbiota of Tibetan Pig. PMID:33424798
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues. PMID:33422151
Comparative transcriptional analyses of Pleurotus ostreatus mutants on beech wood and rice straw shed light on substrate-biased gene regulation. PMID:33415371
Size-Controlled Chemoenzymatic Synthesis of Homogeneous Oligosaccharides of Neisseria meningitidis W Capsular Polysaccharide. PMID:33414981
Whole genome sequencing and metabolomics analyses reveal the biosynthesis of nerol in a multi-stress-tolerant Meyerozyma guilliermondii GXDK6. PMID:33413399
Alginate Degradation: Insights Obtained through Characterization of a Thermophilic Exolytic Alginate Lyase. PMID:33397696
Metagenomic deep sequencing obtains taxonomic and functional profiles of Haemaphysalis longicornis that vary in response to different developmental stages and sexes. PMID:33386513
Three Decades of Advances in Arabinogalactan-Protein Biosynthesis. PMID:33384708
β-Galactosidases from a Sequence-Based Metagenome: Cloning, Expression, Purification and Characterization. PMID:33379234
Genomic Insight into Pediococcus acidilactici HN9, a Potential Probiotic Strain Isolated from the Traditional Thai-Style Fermented Beef Nhang. PMID:33375492
Comparative Analysis of Carbohydrate Active Enzymes in the Flammulina velutipes var. lupinicola Genome. PMID:33374587
In silico screening and experimental analysis of family GH11 xylanases for applications under conditions of alkaline pH and high temperature. PMID:33372612
Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions. PMID:33361321
The Wolfiporia cocos Genome and Transcriptome Shed Light on the Formation of Its Edible and Medicinal Sclerotium. PMID:33359677
Functional implications of MIR domains in protein O-mannosylation. PMID:33357379
New Family of Carbohydrate-Binding Modules Defined by a Galactosyl-Binding Protein Module from a Cellvibrio japonicus Endo-Xyloglucanase. PMID:33355108
En Route to the Transformation of Glycoscience: A Chemist's Perspective on Internal and External Crossroads in Glycochemistry. PMID:33350830
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
Isolation, Identification, and Complete Genome Assembly of an Endophytic Bacillus velezensis YB-130, Potential Biocontrol Agent Against Fusarium graminearum. PMID:33343540
Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. PMID:33339499
Anionic amino acids support hydrolysis of poly-β-(1,6)-N-acetylglucosamine exopolysaccharides by the biofilm dispersing glycosidase Dispersin B. PMID:33334876
Horizontal Gene Transfer and Tandem Duplication Shape the Unique CAZyme Complement of the Mycoparasitic Oomycetes Pythium oligandrum and Pythium periplocum. PMID:33329445
The Close Relationship between the Golgi Trafficking Machinery and Protein Glycosylation. PMID:33321764
Microbial enterotypes beyond genus level: Bacteroides species as a predictive biomarker for weight change upon controlled intervention with arabinoxylan oligosaccharides in overweight subjects. PMID:33319645
Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation. PMID:33315957
Recent progress in synthesis of carbohydrates with sugar nucleotide-dependent glycosyltransferases. PMID:33310623
Phenotypic and genetic characterization of differential galacto-oligosaccharide utilization in Lactobacillus plantarum. PMID:33303847
A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila. PMID:33303810
Safety evaluation of a β-mannanase enzyme preparation produced with Thermothelomyces thermophilus expressing a protein-engineered β-mannanase gene. PMID:33301505
Scalar nanostructure of the Candida albicans cell wall; a molecular, cellular and ultrastructural analysis and interpretation. PMID:33294751
Penicillium janthinellum NCIM1366 shows improved biomass hydrolysis and a larger number of CAZymes with higher induction levels over Trichoderma reesei RUT-C30. PMID:33292411
Characterization of an AA9 LPMO from Thielavia australiensis, TausLPMO9B, under industrially relevant lignocellulose saccharification conditions. PMID:33292403
α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1. PMID:33281771
Hydrocarbon Degradation and Enzyme Activities of Aspergillus oryzae and Mucor irregularis Isolated from Nigerian Crude Oil-Polluted Sites. PMID:33266344
Plant Xyloglucan Xyloglucosyl Transferases and the Cell Wall Structure: Subtle but Significant. PMID:33260399
Combinatorial Glycomic Analyses to Direct CAZyme Discovery for the Tailored Degradation of Canola Meal Non-Starch Dietary Polysaccharides. PMID:33260318
Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation. PMID:33257812
Cellulosomes: Highly Efficient Cellulolytic Complexes. PMID:33252735
Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes. PMID:33240652
Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature. PMID:33233712
Fucoidan Characterization: Determination of Purity and Physicochemical and Chemical Properties. PMID:33228066
Bitter and sweet make tomato hard to (b)eat. PMID:33220068
Aspergillus oryzae Rutinosidase: Biochemical and Structural Investigation. PMID:33218993
Improved Transglycosylation by a Xyloglucan-Active α-l-Fucosidase from Fusarium graminearum. PMID:33217923
Functional Characterization of a New GH107 Endo-α-(1,4)-Fucoidanase from the Marine Bacterium Formosa haliotis. PMID:33213084
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity. PMID:33211093
Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. PMID:33208892
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia). PMID:33204772
Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep. PMID:33203858
Identification of the molecular determinants driving the substrate specificity of fungal lytic polysaccharide monooxygenases (LPMOs). PMID:33199373
Discovery of novel pathways for carbohydrate metabolism. PMID:33197748
Targeted Metagenomics of Retting in Flax: The Beginning of the Quest to Harness the Secret Powers of the Microbiota. PMID:33193706
GelFAP: Gene Functional Analysis Platform for Gastrodia elata. PMID:33193491
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. PMID:33188211
Kinetic insights into the peroxygenase activity of cellulose-active lytic polysaccharide monooxygenases (LPMOs). PMID:33188177
Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome. PMID:33187992
Mucin-Degrading Microbes Release Monosaccharides That Chemoattract Clostridioides difficile and Facilitate Colonization of the Human Intestinal Mucus Layer. PMID:33176423
A haplotype-phased genome of wheat stripe rust pathogen Puccinia striiformis f. sp. tritici, race PST-130 from the Western USA. PMID:33175843
LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification. PMID:33174598
In Silico Characterization and Phylogenetic Distribution of Extracellular Matrix Components in the Model Rhizobacteria Pseudomonas fluorescens F113 and Other Pseudomonads. PMID:33171989
If you eat it, or secrete it, they will grow: the expanding list of nutrients utilized by human gut bacteria. PMID:33168637
A temperature-sensitive Mycobacterium smegmatis glgE mutation leads to a loss of GlgE enzyme activity and thermostability and the accumulation of α-maltose-1-phosphate. PMID:33166604
The nucleocytosolic O-fucosyltransferase SPINDLY affects protein expression and virulence in Toxoplasma gondii. PMID:33158988
Structure of human endo-α-1,2-mannosidase (MANEA), an antiviral host-glycosylation target. PMID:33154157
Decoding the Genomic Variability among Members of the Bifidobacterium dentium Species. PMID:33152994
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. PMID:33150080
Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment. PMID:33139871
Structure of a GH51 α-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi. PMID:33135683
Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. PMID:33127895
The structure of a family 110 glycoside hydrolase provides insight into the hydrolysis of α-1,3-galactosidic linkages in λ-carrageenan and blood group antigens. PMID:33127644
Transcriptome Profiling-Based Analysis of Carbohydrate-Active Enzymes in Aspergillus terreus Involved in Plant Biomass Degradation. PMID:33123513
Comparative Genomic Data Provide New Insight on the Evolution of Pathogenicity in Sporothrix Species. PMID:33117312
Genomic and transcriptomic landscapes and evolutionary dynamics of molluscan glycoside hydrolase families with implications for algae-feeding biology. PMID:33101612
Identification of GH1 gene family fgt members in Stevia rebaudiana and their expression when grown in darkness. PMID:33099759
Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy. PMID:33097854
Ascertaining the biochemical function of an essential pectin methylesterase in the gut microbe Bacteroides thetaiotaomicron. PMID:33097594
PssJ Is a Terminal Galactosyltransferase Involved in the Assembly of the Exopolysaccharide Subunit in Rhizobium Leguminosarum bv. Trifolii. PMID:33092221
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Aspergillus sydowii: Genome Analysis and Characterization of Two Heterologous Expressed, Non-redundant Xylanases. PMID:33071998
Genome-enabled insights into the biology of thrips as crop pests. PMID:33070780
A Need for Improved Cellulase Identification from Metagenomic Sequence Data. PMID:33067195
Genome Sequencing of Paecilomyces Penicillatus Provides Insights into Its Phylogenetic Placement and Mycoparasitism Mechanisms on Morel Mushrooms. PMID:33065983
RBUD: A New Functional Potential Analysis Approach for Whole Microbial Genome Shotgun Sequencing. PMID:33050530
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. PMID:33046698
Mucosal glycan degradation of the host by the gut microbiota. PMID:33043970
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. PMID:33037220
Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community. PMID:33036549
Genome Analysis of a Marine Bacterium Halomonas sp. and Its Role in Nitrate Reduction under the Influence of Photoelectrons. PMID:33027938
COVID-19: molecular targets, drug repurposing and new avenues for drug discovery. PMID:33027420
Genome Mining of the Genus Streptacidiphilus for Biosynthetic and Biodegradation Potential. PMID:33022985
Lupinus albus γ-Conglutin, a Protein Structurally Related to GH12 Xyloglucan-Specific Endo-Glucanase Inhibitor Proteins (XEGIPs), Shows Inhibitory Activity against GH2 β-Mannosidase. PMID:33022933
Current Understanding of the Structure and Function of Fungal Immunomodulatory Proteins. PMID:33015115
Structural and Proteomic Studies of the Aureococcus anophagefferens Virus Demonstrate a Global Distribution of Virus-Encoded Carbohydrate Processing. PMID:33013751
Characterizing human α-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases. PMID:33004438
Investigating host-microbiome interactions by droplet based microfluidics. PMID:33004077
Biochemical characterization of a glycosyltransferase Gtf3 from Mycobacterium smegmatis: a case study of improved protein solubilization. PMID:32999813
In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis. PMID:32993496
Evaluation of the Enzymatic Arsenal Secreted by Myceliophthora thermophila During Growth on Sugarcane Bagasse With a Focus on LPMOs. PMID:32984289
Complete genome sequencing and comparative genome characterization of the lignocellulosic biomass degrading bacterium Pseudomonas stutzeri MP4687 from cattle rumen. PMID:32983925
Biochemical and Taxonomic Characterization of Novel Haloarchaeal Strains and Purification of the Recombinant Halotolerant α-Amylase Discovered in the Isolate. PMID:32983058
A Plumieridine-Rich Fraction From Allamanda polyantha Inhibits Chitinolytic Activity and Exhibits Antifungal Properties Against Cryptococcus neoformans. PMID:32983042
Xylanase supplementation in corn-based swine diets: a review with emphasis on potential mechanisms of action. PMID:32970148
A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus. PMID:32968056
Synergic activity of Cel8Pa β-1,4 endoglucanase and Bg1Pa β-glucosidase from Paenibacillus xylanivorans A59 in beta-glucan conversion. PMID:32963976
Innovations in CAZyme gene diversity and its modification for biorefinery applications. PMID:32963975
The Biocontrol Root-Oomycete, Pythium Oligandrum, Triggers Grapevine Resistance and Shifts in the Transcriptome of the Trunk Pathogenic Fungus, Phaeomoniella Chlamydospora. PMID:32961710
Extension of the taxonomic coverage of the family GH126 outside Firmicutes and in silico characterization of its non-catalytic terminal domains. PMID:32953382
High-Throughput Generation of Product Profiles for Arabinoxylan-Active Enzymes from Metagenomes. PMID:32948521
Characterization of raffinose metabolism genes uncovers a wild Arachis galactinol synthase conferring tolerance to abiotic stresses. PMID:32943670
dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates. PMID:32941621
Microbial dark matter filling the niche in hypersaline microbial mats. PMID:32938503
A Genomic Perspective on the Evolutionary Diversity of the Plant Cell Wall. PMID:32932717
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. PMID:32929206
Trehalose Degradation by Cellvibrio japonicus Exhibits No Functional Redundancy and Is Solely Dependent on the Tre37A Enzyme. PMID:32917758
Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase. PMID:32917756
Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions. PMID:32916905
Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon. PMID:32913311
Biomass-degrading glycoside hydrolases of archaeal origin. PMID:32905355
Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism. PMID:32900811
Mechanistic Insights into the Chaperoning of Human Lysosomal-Galactosidase Activity: Highly Functionalized Aminocyclopentanes and C-5a-Substituted Derivatives of 4-epi-Isofagomine. PMID:32899288
Spatial Metagenomics of Three Geothermal Sites in Pisciarelli Hot Spring Focusing on the Biochemical Resources of the Microbial Consortia. PMID:32899230
Heterologous expression of plant glycosyltransferases for biochemistry and structural biology. PMID:32896313
A phylogenetic view and functional annotation of the animal β1,3-glycosyltransferases of the GT31 CAZy family. PMID:32886776
1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding. PMID:32883364
Characterization and functional analysis of two novel thermotolerant α-L-arabinofuranosidases belonging to glycoside hydrolase family 51 from Thielavia terrestris and family 62 from Eupenicillium parvum. PMID:32880690
The structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47. PMID:32880590
Glycoside Hydrolases Restrict the Side Chain Conformation of Their Substrates To Gain Additional Transition State Stabilization. PMID:32877175
Differential Evolution of α-Glucan Water Dikinase (GWD) in Plants. PMID:32867090
A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters. PMID:32854333
Carbohydrate Binding Modules: Diversity of Domain Architecture in Amylases and Cellulases From Filamentous Microorganisms. PMID:32850729
A Global Survey of Carbohydrate Esterase Families 1 and 10 in Oomycetes. PMID:32849784
Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments. PMID:32849460
Frigoriglobus tundricola gen. nov., sp. nov., a psychrotolerant cellulolytic planctomycete of the family Gemmataceae from a littoral tundra wetland. PMID:32847778
Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase. PMID:32843546
Enzymatic processing of lignocellulosic biomass: principles, recent advances and perspectives. PMID:32840713
N-glycosylation of the human β1,4-galactosyltransferase 4 is crucial for its activity and Golgi localization. PMID:32827291
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing. PMID:32821405
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. PMID:32819293
Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases. PMID:32816991
Characterization of the β-glucuronidase Pn3Pase as the founding member of glycoside hydrolase family GH169. PMID:32810871
Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae. PMID:32792608
Dual Substrate Specificity of the Rutinosidase from Aspergillus niger and the Role of Its Substrate Tunnel. PMID:32784723
Removal of N-linked glycans in cellobiohydrolase Cel7A from Trichoderma reesei reveals higher activity and binding affinity on crystalline cellulose. PMID:32782472
Prominent members of the human gut microbiota express endo-acting O-glycanases to initiate mucin breakdown. PMID:32782292
Characterization of the Exopolysaccharide Biosynthesis Pathway in Myxococcus xanthus. PMID:32778557
Metagenomics revealing molecular profiling of community structure and metabolic pathways in natural hot springs of the Sikkim Himalaya. PMID:32778049
Calcium Binding by Arabinogalactan Polysaccharides Is Important for Normal Plant Development. PMID:32769130
Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. PMID:32765478
Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar. PMID:32756518
Investigating the Product Profiles and Structural Relationships of New Levansucrases with Conventional and Non-Conventional Substrates. PMID:32751348
Convergent evolution of processivity in bacterial and fungal cellulases. PMID:32747547
Extensin arabinoside chain length is modulated in elongating cotton fibre. PMID:32743148
Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis. PMID:32742297
Identification and Characterization of a Novel N- and O-Glycosyltransferase from Saccharopolyspora erythraea. PMID:32727097
Mechanistic basis of substrate-O2 coupling within a chitin-active lytic polysaccharide monooxygenase: An integrated NMR/EPR study. PMID:32723819
Characterization of Spodoptera litura Gut Bacteria and Their Role in Feeding and Growth of the Host. PMID:32714311
A Conserved Glycoside Hydrolase Family 7 Cellobiohydrolase PsGH7a of Phytophthora sojae Is Required for Full Virulence on Soybean. PMID:32714289
A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. PMID:32709972
Glucose counteracts wood-dependent induction of lignocellulolytic enzyme secretion in monokaryon and dikaryon submerged cultures of the white-rot basidiomycete Pleurotus ostreatus. PMID:32709970
Amino acid sequence associated with bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer. PMID:32703190
A unified catalog of 204,938 reference genomes from the human gut microbiome. PMID:32690973
Conserved Pigment Profiles in Phylogenetically Diverse Symbiotic Bacteria Associated with the Corals Montastraea cavernosa and Mussismilia braziliensis. PMID:32681284
Synbiotic Matchmaking in Lactobacillus plantarum: Substrate Screening and Gene-Trait Matching To Characterize Strain-Specific Carbohydrate Utilization. PMID:32680865
Functional Validation of Two Fungal Subfamilies in Carbohydrate Esterase Family 1 by Biochemical Characterization of Esterases From Uncharacterized Branches. PMID:32671051
Chemoenzymatic Production and Engineering of Chitooligosaccharides and N-acetyl Glucosamine for Refining Biological Activities. PMID:32671017
A Comprehensive Review on Natural Bioactive Compounds and Probiotics as Potential Therapeutics in Food Allergy Treatment. PMID:32670266
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function. PMID:32667876
GBA3: a polymorphic pseudogene in humans that experienced repeated gene loss during mammalian evolution. PMID:32665690
Gut microbiome signatures of nursing home residents carrying Enterobacteria producing extended-spectrum β-lactamases. PMID:32665016
To gel or not to gel: differential expression of carrageenan-related genes between the gametophyte and tetasporophyte life cycle stages of the red alga Chondrus crispus. PMID:32661246
Does an Apple a Day Also Keep the Microbes Away? The Interplay Between Diet, Microbiota, and Host Defense Peptides at the Intestinal Mucosal Barrier. PMID:32655555
Comparative Genomics Uncovers the Genetic Diversity and Characters of Veillonella atypica and Provides Insights Into Its Potential Applications. PMID:32655519
Molecular characterization and heterologous expression of two α-glucosidases from Metschnikowia spp, both producers of honey sugars. PMID:32652991
Complete Biosynthesis of the Anti-Diabetic Plant Metabolite Montbretin A. PMID:32647038
Characterization of two family AA9 LPMOs from Aspergillus tamarii with distinct activities on xyloglucan reveals structural differences linked to cleavage specificity. PMID:32640001
Glycosyltransferase GT1 family: Phylogenetic distribution, substrates coverage, and representative structural features. PMID:32637037
Sugary Logistics Gone Wrong: Membrane Trafficking and Congenital Disorders of Glycosylation. PMID:32629928
Degradative Capacity of Two Strains of Rhodonia placenta: From Phenotype to Genotype. PMID:32625194
Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class "Acidobacteriia". PMID:32625179
Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation. PMID:32624871
Isolation, identification, and whole genome sequence analysis of the alginate-degrading bacterium Cobetia sp. cqz5-12. PMID:32616809
Draft Genome Sequence of a New Oscillospiraceae Bacterium Isolated from Anaerobic Digestion of Biomass. PMID:32616639
Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan. PMID:32610703
A guide to human microbiome research: study design, sample collection, and bioinformatics analysis. PMID:32604176
Expression, purification, and characterization of the recombinant exo-1,3-β-glucanase (Exo1) of the pathogenic oomycete Pythium insidiosum. PMID:32596527
Maioricimonas rarisocia gen. nov., sp. nov., a novel planctomycete isolated from marine sediments close to Mallorca Island. PMID:32583192
Bioprospecting Microbial Diversity for Lignin Valorization: Dry and Wet Screening Methods. PMID:32582068
The Gene Catalog and Comparative Analysis of Gut Microbiome of Big Cats Provide New Insights on Panthera Species. PMID:32582053
Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface. PMID:32581040
Genomic and transcriptomic survey of an endophytic fungus Calcarisporium arbuscula NRRL 3705 and potential overview of its secondary metabolites. PMID:32580753
GapMind: Automated Annotation of Amino Acid Biosynthesis. PMID:32576650
Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection. PMID:32573086
Cultivation of Mushrooms and Their Lignocellulolytic Enzyme Production Through the Utilization of Agro-Industrial Waste. PMID:32570772
Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers. PMID:32570748
Oral Microbiota Display Profound Differential Metabolic Kinetics and Community Shifts upon Incubation with Sucrose, Trehalose, Kojibiose, and Xylitol. PMID:32561577
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. PMID:32560349
Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7. PMID:32549280
GTDB: an integrated resource for glycosyltransferase sequences and annotations. PMID:32542364
Exploration of Two Pectate Lyases from Caldicellulosiruptor bescii Reveals that the CBM66 Module Has a Crucial Role in Pectic Biomass Degradation. PMID:32532871
Vast Differences in Strain-Level Diversity in the Gut Microbiota of Two Closely Related Honey Bee Species. PMID:32531278
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. PMID:32531032
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor. PMID:32529805
Synthetic Glycobiology: Parts, Systems, and Applications. PMID:32526139
A glucotolerant β-glucosidase from the fungus Talaromyces amestolkiae and its conversion into a glycosynthase for glycosylation of phenolic compounds. PMID:32522206
A unique combination of glycoside hydrolases in Streptococcus suis specifically and sequentially acts on host-derived αGal-epitope glycans. PMID:32518157
Configuration of active site segments in lytic polysaccharide monooxygenases steers oxidative xyloglucan degradation. PMID:32514307
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations. PMID:32513234
Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Dairy Goats Fed Different Rumen Degradable Starch. PMID:32508797
A comprehensive overview of substrate specificity of glycoside hydrolases and transporters in the small intestine : "A gut feeling". PMID:32506169
Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 β-Xylosidases. PMID:32500063
Glycosyltransferase-Like RSE1 Negatively Regulates Leaf Senescence Through Salicylic Acid Signaling in Arabidopsis. PMID:32499801
A baculoviral system for the production of human β-glucocerebrosidase enables atomic resolution analysis. PMID:32496218
Depth-dependent mycoplankton glycoside hydrolase gene activity in the open ocean-evidence from the Tara Oceans eukaryote metatranscriptomes. PMID:32494052
Cross-utilization of β-galactosides and cellobiose in Geobacillus stearothermophilus. PMID:32493770
An Epoxide Intermediate in Glycosidase Catalysis. PMID:32490192
A Shut-and-Open Case: An Epoxide Intermediate Spotted in the Reaction Coordinate of a Family of Glycoside Hydrolases. PMID:32490180
Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes. PMID:32483294
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. PMID:32473013
STARCH SYNTHASE5, a Noncanonical Starch Synthase-Like Protein, Promotes Starch Granule Initiation in Arabidopsis. PMID:32471861
Genome mining of the citrus pathogen Elsinoë fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters. PMID:32469865
Insights Into the Role of Exposed Surface Charged Residues in the Alkali-Tolerance of GH11 Xylanase. PMID:32457729
An 1,4-α-Glucosyltransferase Defines a New Maltodextrin Catabolism Scheme in Lactobacillus acidophilus. PMID:32444471
A Reference Genome of Bursaphelenchus mucronatus Provides New Resources for Revealing Its Displacement by Pinewood Nematode. PMID:32438771
MADS-Box and bHLH Transcription Factors Coordinate Transmitting Tract Development in Arabidopsis thaliana. PMID:32435255
Genome Comparison Identifies Different Bacillus Species in a Bast Fibre-Retting Bacterial Consortium and Provides Insights into Pectin Degrading Genes. PMID:32424209
Properties of recombinant 4-α-glucanotransferase from Bifidobacterium longum subsp. longum JCM 1217 and its application. PMID:32419965
Novel clostridial lineages recovered from metagenomes of a hot oil reservoir. PMID:32415178
Targeting Eukaryotic mRNA Translation by Legionella pneumophila. PMID:32411722
A specific oligosaccharide-binding site in the alternansucrase catalytic domain mediates alternan elongation. PMID:32409580
Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes. PMID:32406917
Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence. PMID:32404017
Calycomorphotria hydatis gen. nov., sp. nov., a novel species in the family Planctomycetaceae with conspicuous subcellular structures. PMID:32399715
Tautonia plasticadhaerens sp. nov., a novel species in the family Isosphaeraceae isolated from an alga in a hydrothermal area of the Eolian Archipelago. PMID:32399714
Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation. PMID:32393808
Feruloyl Esterases for Biorefineries: Subfamily Classified Specificity for Natural Substrates. PMID:32391342
Biochemical characterization of a novel α-L-fucosidase from Pedobacter sp. and its application in synthesis of 3'-fucosyllactose and 2'-fucosyllactose. PMID:32388762
Isolation and Characterization of a Novel Cold-Active, Halotolerant Endoxylanase from Echinicola rosea sp. Nov. JL3085T. PMID:32384803
Uncovering the hidden diversity of litter-decomposition mechanisms in mushroom-forming fungi. PMID:32382073
Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17 exo-α-glucosidases. PMID:32381508
The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues? PMID:32365577
Comparative Genomics Uncovers the Genetic Diversity and Synthetic Biology of Secondary Metabolite Production of Trametes. PMID:32363038
α-L-Fucosidases and their applications for the production of fucosylated human milk oligosaccharides. PMID:32356197
Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14. PMID:32345704
Impacts of biofilms on the conversion of cellulose. PMID:32337627
Different effects of carbohydrate binding modules on the viscoelasticity of nanocellulose gels. PMID:32337376
Updated review of research on the gut microbiota and their relation to depression in animals and human beings. PMID:32332994
Identification and Characterization of a Novel Hyperthermostable Bifunctional Cellobiohydrolase- Xylanase Enzyme for Synergistic Effect With Commercial Cellulase on Pretreated Wheat Straw Degradation. PMID:32328483
In silico Proteomic Analysis Provides Insights Into Phylogenomics and Plant Biomass Deconstruction Potentials of the Tremelalles. PMID:32318549
Domain sliding of two Staphylococcus aureus N-acetylglucosaminidases enables their substrate-binding prior to its catalysis. PMID:32313083
Investigation of a thermostable multi-domain xylanase-glucuronoyl esterase enzyme from Caldicellulosiruptor kristjanssonii incorporating multiple carbohydrate-binding modules. PMID:32308737
The Homogalacturonan Deconstruction System of Paenibacillus amylolyticus 27C64 Requires No Extracellular Pectin Methylesterase and Has Significant Industrial Potential. PMID:32303547
Functional study of C-terminal domain of the thermoacidophilic raw starch-hydrolyzing α-amylase Gt-amy. PMID:32257525
Structure of the Mycobacterium smegmatis α-maltose-1-phosphate synthase GlgM. PMID:32254051
The preceding root system drives the composition and function of the rhizosphere microbiome. PMID:32252812
Draft Genome Sequence of the Yeast Rhodotorula sp. Strain CCFEE 5036, Isolated from McMurdo Dry Valleys, Antarctica. PMID:32241854
Lignipirellula cremea gen. nov., sp. nov., a planctomycete isolated from wood particles in a brackish river estuary. PMID:32239303
Minimalistic Cellulosome of the Butanologenic Bacterium Clostridium saccharoperbutylacetonicum. PMID:32234813
Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases. PMID:32234211
Enzymatic Adaptation of Bifidobacterium bifidum to Host Glycans, Viewed from Glycoside Hydrolyases and Carbohydrate-Binding Modules. PMID:32231096
Deciphering the Root Endosphere Microbiome of the Desert Plant Alhagi sparsifolia for Drought Resistance-Promoting Bacteria. PMID:32220847
Aureliella helgolandensis gen. nov., sp. nov., a novel Planctomycete isolated from a jellyfish at the shore of the island Helgoland. PMID:32219667
Comparative Analysis of High-Throughput Assays of Family-1 Plant Glycosyltransferases. PMID:32210023
Genome analysis of cellulose and hemicellulose degrading Micromonospora sp. CP22. PMID:32206494
Niche-based assembly of bacterial consortia on the diatom Thalassiosira rotula is stable and reproducible. PMID:32203123
Fungal secretome profile categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium. PMID:32198418
Isopod holobionts as promising models for lignocellulose degradation. PMID:32190114
Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map. PMID:32188049
Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism. PMID:32182686
Comparative Genomics of Pediococcus pentosaceus Isolated From Different Niches Reveals Genetic Diversity in Carbohydrate Metabolism and Immune System. PMID:32174896
Biochemical and Genetic Analysis Identify CSLD3 as a beta-1,4-Glucan Synthase That Functions during Plant Cell Wall Synthesis. PMID:32169960
Crystal Structure of α-Xylosidase from Aspergillus niger in Complex with a Hydrolyzed Xyloglucan Product and New Insights in Accurately Predicting Substrate Specificities of GH31 Family Glycosidases. PMID:32161692
Processivity of dextransucrases synthesizing very-high-molar-mass dextran is mediated by sugar-binding pockets in domain V. PMID:32161118
Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. PMID:32156798
Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach. PMID:32156071
Global Characterization of GH10 Family Xylanase Genes in Rhizoctonia cerealis and Functional Analysis of Xylanase RcXYN1 During Fungus Infection in Wheat. PMID:32155734
Functional exploration of the GH29 fucosidase family. PMID:32149359
Cloning and characterization of low-temperature adapted GH5-CBM3 endo-cellulase from Bacillus subtilis 1AJ3 and their application in the saccharification of switchgrass and coffee grounds. PMID:32140794
Spatially remote motifs cooperatively affect substrate preference of a ruminal GH26-type endo-β-1,4-mannanase. PMID:32139511
Genome-wide annotation, comparison and functional genomics of carbohydrate-active enzymes in legumes infecting Fusarium oxysporum formae speciales. PMID:32128282
Systematic metadata analysis of brown rot fungi gene expression data reveals the genes involved in Fenton's reaction and wood decay process. PMID:32128279
Sequential Glycosylation of Proteins with Substrate-Specific N-Glycosyltransferases. PMID:32123732
Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus. PMID:32123543
Neotropical termite microbiomes as sources of novel plant cell wall degrading enzymes. PMID:32123275
Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics. PMID:32117110
High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates. PMID:32114675
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus. PMID:32111691
A comparative genomics study of 23 Aspergillus species from section Flavi. PMID:32107379
Structure and mechanism of the ER-based glucosyltransferase ALG6. PMID:32103179
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PMID:32095380
Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. PMID:32093654
Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. PMID:32092934
Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. PMID:32071394
Genomic insights into the lifestyles, functional capacities and oleagenicity of members of the fungal family Trichosporonaceae. PMID:32066798
Structural basis of mammalian high-mannose N-glycan processing by human gut Bacteroides. PMID:32060313
Proteomic Characterization of Lignocellulolytic Enzymes Secreted by the Insect-Associated Fungus Daldinia decipiens oita, Isolated from a Forest in Northern Japan. PMID:32060026
Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. PMID:32059463
Rational Design of Mechanism-Based Inhibitors and Activity-Based Probes for the Identification of Retaining α-l-Arabinofuranosidases. PMID:32053363
A Fast and Accurate Method to Identify and Quantify Enzymes in Brush-Border Membranes: In Situ Hydrolysis Followed by Nano LC-MS/MS. PMID:32050538
Quantitative Comparison of Pyranose Dehydrogenase Action on Diverse Xylooligosaccharides. PMID:32047737
A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. PMID:32046716
Comparative genomics applied to Mucor species with different lifestyles. PMID:32039703
A mutation map for human glycoside hydrolase genes. PMID:32039448
"CATAStrophy," a Genome-Informed Trophic Classification of Filamentous Plant Pathogens - How Many Different Types of Filamentous Plant Pathogens Are There? PMID:32038539
Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801. PMID:32036475
The infant gut microbiome as a microbial organ influencing host well-being. PMID:32024556
Unique subsite specificity and potential natural function of a chitosan deacetylase from the human pathogen Cryptococcus neoformans. PMID:32015121
Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium. PMID:32013859
Sialidases From Clostridium perfringens and Their Inhibitors. PMID:31998664
Novel Hyperthermophilic Crenarchaeon Thermofilum adornatum sp. nov. Uses GH1, GH3, and Two Novel Glycosidases for Cellulose Hydrolysis. PMID:31998263
Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. PMID:31992772
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. PMID:31988474
Versatile biotechnological applications of amylosucrase, a novel glucosyltransferase. PMID:31976122
CUPRA-ZYME: An Assay for Measuring Carbohydrate-Active Enzyme Activities, Pathways, and Substrate Specificities. PMID:31961140
Profile Comparer Extended: phylogeny of lytic polysaccharide monooxygenase families using profile hidden Markov model alignments. PMID:31956399
Theoretical and experimental approaches to understand the biosynthesis of starch granules in a physiological context. PMID:31955343
Draft Genome Sequences of Bacterial Strains Capable of Degrading Ulvan from the Green Alga Ulva ohnoi. PMID:31948973
Complete Genome Sequence of a New Clostridium sp. Isolated from Anaerobic Digestion and Biomethanation. PMID:31948972
Comparative Genomics Analysis of Lactobacillus mucosae from Different Niches. PMID:31947593
Vertebrate Alpha2,8-Sialyltransferases (ST8Sia): A Teleost Perspective. PMID:31947579
Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume. PMID:31941452
3D Structure and Function of Glycosyltransferases Involved in N-glycan Maturation. PMID:31936666
Identification and Characterization of a β-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66T. PMID:31936522
Comparative Genomics Analysis of Lactobacillus ruminis from Different Niches. PMID:31936280
Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens. PMID:31924658
Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics. PMID:31921085
Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens. PMID:31921065
Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation. PMID:31921009
Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. PMID:31915220
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment. PMID:31911466
Glycan Array Technology. PMID:31907566
Molecular mechanism of the chitinolytic peroxygenase reaction. PMID:31907317
NMR and Fluorescence Spectroscopies Reveal the Preorganized Binding Site in Family 14 Carbohydrate-Binding Module from Human Chitotriosidase. PMID:31891077
Insights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas species. PMID:31886414
VelA and LaeA are Key Regulators of Epichloë festucae Transcriptomic Response during Symbiosis with Perennial Ryegrass. PMID:31878026
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. PMID:31876091
[Research progress on carbohydrate active enzymes of human microbiome]. PMID:31875448
Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments. PMID:31873205
Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups. PMID:31873088
Structure and function of Bs164 β-mannosidase from Bacteroides salyersiae the founding member of glycoside hydrolase family GH164. PMID:31871050
SwsB and SafA Are Required for CwlJ-Dependent Spore Germination in Bacillus subtilis. PMID:31871031
A Similar Secretome Disturbance as a Hallmark of Non-pathogenic Botrytis cinerea ATMT-Mutants? PMID:31866989
The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features. PMID:31864285
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum. PMID:31861401
A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone. PMID:31858660
Analyzing the Substrate Specificity of a Class of Long-Horned-Beetle-Derived Xylanases by Using Synthetic Arabinoxylan Oligo- and Polysaccharides. PMID:31850611
Current challenges and best-practice protocols for microbiome analysis. PMID:31848574
Genome-Wide Analysis of Whole Human Glycoside Hydrolases by Data-Driven Analysis in Silico. PMID:31847093
BGAL1 depletion boosts the level of β-galactosylation of N- and O-glycans in N. benthamiana. PMID:31837192
Influence of Lytic Polysaccharide Monooxygenase Active Site Segments on Activity and Affinity. PMID:31835532
Therapeutic significance of β-glucuronidase activity and its inhibitors: A review. PMID:31835168
Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes. PMID:31830116
Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools. PMID:31830054
Horizontal Transfer and Gene Loss Shaped the Evolution of Alpha-Amylases in Bilaterians. PMID:31810981
Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae. PMID:31800383
Heterologous expression and functional characterization of a GH10 endoxylanase from Aspergillus fumigatus var. niveus with potential biotechnological application. PMID:31799141
Production and characterization of Aspergillus niger GH29 family α-fucosidase and production of a novel non-reducing 1-fucosyllactose. PMID:31792892
Toward universal donor blood: Enzymatic conversion of A and B to O type. PMID:31792054
Analysis of glycoside hydrolases from oat (Avena sativa) seedling extract. PMID:31787817
Structural and functional role of disulphide bonds and substrate binding residues of the human beta-galactoside alpha-2,3-sialyltransferase 1 (hST3Gal1). PMID:31784620
Division of labor in honey bee gut microbiota for plant polysaccharide digestion. PMID:31776248
Discovering the Microbial Enzymes Driving Drug Toxicity with Activity-Based Protein Profiling. PMID:31774274
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. PMID:31754206
Processivity in Bacterial Glycosyltransferases. PMID:31750644
East-Asian Helicobacter pylori strains synthesize heptan-deficient lipopolysaccharide. PMID:31747390
Structural Identity of Galactooligosaccharide Molecules Selectively Utilized by Single Cultures of Probiotic Bacterial Strains. PMID:31747272
Structural and biochemical studies of the glucuronoyl esterase OtCE15A illuminate its interaction with lignocellulosic components. PMID:31740581
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. PMID:31735951
A new GH13 subfamily represented by the α-amylase from the halophilic archaeon Haloarcula hispanica. PMID:31734852
Comprehensive Analysis of the Chitinase Gene Family in Cucumber (Cucumis sativus L.): From Gene Identification and Evolution to Expression in Response to Fusarium oxysporum. PMID:31731414
Integrated Counts of Carbohydrate-Active Protein Domains as Metabolic Readouts to Distinguish Probiotic Biology and Human Fecal Metagenomes. PMID:31727954
Complete Genome Sequence of Cellulomonas sp. Strain Y8, a High-GC-Content Plasmid-Free Heavy Metal-Resistant Bacterium Isolated from Farmland Soil. PMID:31727705
Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates. PMID:31726030
Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales. PMID:31720122
Deciphering the unique cellulose degradation mechanism of the ruminal bacterium Fibrobacter succinogenes S85. PMID:31719545
Can we make Chitosan by Enzymatic Deacetylation of Chitin? PMID:31717737
Sequencing and Functional Annotation of the Whole Genome of Shiraia bambusicola. PMID:31712259
Metagenomics Reveals Seasonal Functional Adaptation of the Gut Microbiome to Host Feeding and Fasting in the Chinese Alligator. PMID:31708889
Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota. PMID:31705042
Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics. PMID:31703093
β-Xylosidases: Structural Diversity, Catalytic Mechanism, and Inhibition by Monosaccharides. PMID:31698702
Natural Polymorphisms in Arabidopsis Result in Wide Variation or Loss of the Amylose Component of Starch. PMID:31694903
Structure-function relationships underlying the dual N-acetylmuramic and N-acetylglucosamine specificities of the bacterial peptidoglycan deacetylase PdaC. PMID:31690626
Biochemical characterisation of four rhamnosidases from thermophilic bacteria of the genera Thermotoga, Caldicellulosiruptor and Thermoclostridium. PMID:31685873
Evolution of the Cell Wall Gene Families of Grasses. PMID:31681352
Molecular characteristics of plant UDP-arabinopyranose mutases. PMID:31679023
Evolutionary adaptation of Aspergillus niger for increased ferulic acid tolerance. PMID:31674709
Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides. PMID:31672746
Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4. PMID:31670768
Differences in protein structural regions that impact functional specificity in GT2 family β-glucan synthases. PMID:31665152
Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae. PMID:31660859
Prognostic relevance of the Golgi mannosidase MAN1A1 in ovarian cancer: impact of N-glycosylation on tumour cell aggregation. PMID:31659304
Deletion of the middle region of the transcription factor ClrB in Penicillium oxalicum enables cellulase production in the presence of glucose. PMID:31659120
Unravelling the diversity of glycoside hydrolase family 13 α-amylases from Lactobacillus plantarum WCFS1. PMID:31655584
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action. PMID:31645552
The molecular basis of endolytic activity of a multidomain alginate lyase from Defluviitalea phaphyphila, a representative of a new lyase family, PL39. PMID:31624143
Structural and Functional Characterization of Three Novel Fungal Amylases with Enhanced Stability and pH Tolerance. PMID:31623309
Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7. PMID:31619701
Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. PMID:31616394
A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes. PMID:31614693
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Enzymatic Modifications of Chitin, Chitosan, and Chitooligosaccharides. PMID:31612131
Global ecotypes in the ubiquitous marine clade SAR86. PMID:31611653
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. PMID:31607556
Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization. PMID:31604773
Chitin deacetylases Cod4 and Cod7 are involved in polar growth of Aspergillus fumigatus. PMID:31602821
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains. PMID:31600234
ProCarbDB: a database of carbohydrate-binding proteins. PMID:31598690
Genomic Insights into the Fungal Lignocellulolytic Machinery of Flammulina rossica. PMID:31597238
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. PMID:31585998
Discovery, activity and characterisation of an AA10 lytic polysaccharide oxygenase from the shipworm symbiont Teredinibacter turnerae. PMID:31583018
Efficient production of isomelezitose by a glucosyltransferase activity in Metschnikowia reukaufii cell extracts. PMID:31576667
Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery. PMID:31572496
Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon. PMID:31572312
Degradation of Four Major Mycotoxins by Eight Manganese Peroxidases in Presence of a Dicarboxylic Acid. PMID:31569657
Membrane Topological Model of Glycosyltransferases of the GT-C Superfamily. PMID:31569500
A carbohydrate-binding family 48 module enables feruloyl esterase action on polymeric arabinoxylan. PMID:31558605
Soil Metatranscriptomes Under Long-Term Experimental Warming and Drying: Fungi Allocate Resources to Cell Metabolic Maintenance Rather Than Decay. PMID:31551941
Structural basis for the specific cleavage of core-fucosylated N-glycans by endo-β-N-acetylglucosaminidase from the fungus Cordyceps militaris. PMID:31548313
Enzymes from Marine Polar Regions and Their Biotechnological Applications. PMID:31547548
Directed Evolution of Clostridium thermocellum β-Glucosidase A Towards Enhanced Thermostability. PMID:31547488
The Cellulosome Paradigm in An Extreme Alkaline Environment. PMID:31547347
Specific Xylan Activity Revealed for AA9 Lytic Polysaccharide Monooxygenases of the Thermophilic Fungus Malbranchea cinnamomea by Functional Characterization. PMID:31540984
Prospecting for microbial α-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase. PMID:31530641
Structural and functional aspects of mannuronic acid-specific PL6 alginate lyase from the human gut microbe Bacteroides cellulosilyticus. PMID:31530640
Identification and optimization of PrsA in Bacillus subtilis for improved yield of amylase. PMID:31530286
Complete Genome Sequence of Phreatobacter sp. Strain NMCR1094, a Formate-Utilizing Bacterium Isolated from a Freshwater Stream. PMID:31515346
Influence of the carbohydrate-binding module on the activity of a fungal AA9 lytic polysaccharide monooxygenase on cellulosic substrates. PMID:31508147
Group A, B, C, and G Streptococcus Lancefield antigen biosynthesis is initiated by a conserved α-d-GlcNAc-β-1,4-l-rhamnosyltransferase. PMID:31506299
A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16). PMID:31501245
Expression of starch-binding factor CBM20 in barley plastids controls the number of starch granules and the level of CO2 fixation. PMID:31494665
Genome Sequence of Metarhizium rileyi, a Microbial Control Agent for Lepidoptera. PMID:31488537
MoGT2 Is Essential for Morphogenesis and Pathogenicity of Magnaporthe oryzae. PMID:31484736
Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. PMID:31471321
Biosynthesis of Hyaluronic acid polymer: Dissecting the role of sub structural elements of hyaluronan synthase. PMID:31467312
Biochemical Characterization of the α-l-Rhamnosidase DtRha from Dictyoglomus thermophilum: Application to the Selective Derhamnosylation of Natural Flavonoids. PMID:31459445
Higher expression of the strawberry xyloglucan endotransglucosylase/hydrolase genes FvXTH9 and FvXTH6 accelerates fruit ripening. PMID:31454115
Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae degradation. PMID:31451726
Co-evolution of Enzymes Involved in Plant Cell Wall Metabolism in the Grasses. PMID:31447874
Target highlights in CASP13: Experimental target structures through the eyes of their authors. PMID:31442339
Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. PMID:31428064
Emerging structural insights into glycosyltransferase-mediated synthesis of glycans. PMID:31427814
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. PMID:31420336
Ega3 from the fungal pathogen Aspergillus fumigatus is an endo-α-1,4-galactosaminidase that disrupts microbial biofilms. PMID:31416836
Structural Comparison of a Promiscuous and a Highly Specific Sucrose 6F-Phosphate Phosphorylase. PMID:31405215
Biosynthesis of the anti-diabetic metabolite montbretin A: glucosylation of the central intermediate mini-MbA. PMID:31400245
Proteome-wide subtractive approach to prioritize a hypothetical protein of XDR-Mycobacterium tuberculosis as potential drug target. PMID:31388979
Critical Review of Plant Cell Wall Matrix Polysaccharide Glycosyltransferase Activities Verified by Heterologous Protein Expression. PMID:31379900
De novo genome assembly and comparative annotation reveals metabolic versatility in cellulolytic bacteria from cropland and forest soils. PMID:31378834
Conversion of Chitin to Defined Chitosan Oligomers: Current Status and Future Prospects. PMID:31374920
Characterization and homology modelling of a novel multi-modular and multi-functional Paenibacillus mucilaginosus glycoside hydrolase. PMID:31372752
Microbial diversity analysis and screening for novel xylanase enzymes from the sediment of the Lobios Hot Spring in Spain. PMID:31371784
Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23. PMID:31371382
Comparative genome analysis of Lactobacillus mudanjiangensis, an understudied member of the Lactobacillus plantarum group. PMID:31368886
The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'. PMID:31359136
Insights into the mechanism(s) of digestion of crystalline cellulose by plant class C GH9 endoglucanases. PMID:31338614
Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation. PMID:31338125
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures. PMID:31333598
Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. PMID:31324716
Revisiting the Language of Glycoscience: Readers, Writers and Erasers in Carbohydrate Biochemistry. PMID:31317590
In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. PMID:31316134
Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A. PMID:31316086
Molecular and Biochemical Characterization of a Bimodular Xylanase From Marinifilaceae Bacterium Strain SPP2. PMID:31312196
Glycosylation of acyl carrier protein-bound polyketides during pactamycin biosynthesis. PMID:31308531
Perspective: Physiologic Importance of Short-Chain Fatty Acids from Nondigestible Carbohydrate Fermentation. PMID:31305907
GeneHunt for rapid domain-specific annotation of glycoside hydrolases. PMID:31300677
Genomic features and evolution of the conditionally dispensable chromosome in the tangerine pathotype of Alternaria alternata. PMID:31297970
Investigating Host Microbiota Relationships Through Functional Metagenomics. PMID:31275257
The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile. PMID:31272480
Two complementary α-fucosidases from Streptococcus pneumoniae promote complete degradation of host-derived carbohydrate antigens. PMID:31266803
Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314T Revealed by Genomic Data Mining and Pigment Characterization. PMID:31266176
Biochemical Characterization of a Novel Monospecific Endo-β-1,4-Glucanase Belonging to GH Family 5 From a Rhizosphere Metagenomic Library. PMID:31258522
A Novel Subfamily of Endo-β-1,4-Glucanases in Glycoside Hydrolase Family 10. PMID:31253686
Substrate selectivity in starch polysaccharide monooxygenases. PMID:31235519
A Novel PL9 Pectate Lyase from Paenibacillus polymyxa KF-1: Cloning, Expression, and Its Application in Pectin Degradation. PMID:31234557
Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum. PMID:31231336
Repertoire of the Bacillus thuringiensis Virulence Factors Unrelated to Major Classes of Protein Toxins and Its Role in Specificity of Host-Pathogen Interactions. PMID:31212976
Structure of Aspergillus aculeatus β-1,4-galactanase in complex with galactobiose. PMID:31204685
The hydrolase LpqI primes mycobacterial peptidoglycan recycling. PMID:31201321
The xyl-doc gene cluster of Ruminiclostridium cellulolyticum encodes GH43- and GH62-α-l-arabinofuranosidases with complementary modes of action. PMID:31198441
Identification of Thermotoga maritima MSB8 GH57 α-amylase AmyC as a glycogen-branching enzyme with high hydrolytic activity. PMID:31190240
Evolution and comparative genomics of the most common Trichoderma species. PMID:31189469
First crystal structure of an endo-levanase - the BT1760 from a human gut commensal Bacteroides thetaiotaomicron. PMID:31186460
Molecular basis for branched steviol glucoside biosynthesis. PMID:31182573
Lignocellulose degradation in isopods: new insights into the adaptation to terrestrial life. PMID:31174468
Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP). PMID:31168320
High-Throughput Recovery and Characterization of Metagenome-Derived Glycoside Hydrolase-Containing Clones as a Resource for Biocatalyst Development. PMID:31164449
Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. PMID:31160824
CA-30, an oligosaccharide fraction derived from Liuwei Dihuang decoction, ameliorates cognitive deterioration via the intestinal microbiome in the senescence-accelerated mouse prone 8 strain. PMID:31160541
Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model. PMID:31159860
Temporal proteome dynamics of Clostridium cellulovorans cultured with major plant cell wall polysaccharides. PMID:31159733
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus). PMID:31146507
Synthesis of Human Milk Oligosaccharides: Protein Engineering Strategies for Improved Enzymatic Transglycosylation. PMID:31141914
Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi. PMID:31138126
In vitro Digestibility of Dietary Carbohydrates: Toward a Standardized Methodology Beyond Amylolytic and Microbial Enzymes. PMID:31134206
Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus. PMID:31133029
New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea. PMID:31126943
Glycoside Hydrolase Genes Are Required for Virulence of Agrobacterium tumefaciens on Bryophyllum daigremontiana and Tomato. PMID:31126942
Characterization of a thermoactive endoglucanase isolated from a biogas plant metagenome. PMID:31119430
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data. PMID:31111606
A novel fungal GH30 xylanase with xylobiohydrolase auxiliary activity. PMID:31110561
Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site. PMID:31110237
ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans. PMID:31109990
Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica. PMID:31096659
The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls. PMID:31095564
Fungiculture in Termites Is Associated with a Mycolytic Gut Bacterial Community. PMID:31092601
Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes. PMID:31089985
Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes. PMID:31086567
Antimicrobial activity and carbohydrate metabolism in the bacterial metagenome of the soil-living invertebrate Folsomia candida. PMID:31086216
Biofuel production from straw hydrolysates: current achievements and perspectives. PMID:31081521
Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles. PMID:31077129
Draft Genome Sequence of an Antarctic Isolate of the Black Yeast Fungus Exophiala mesophila. PMID:31072892
Probing the role of an invariant active site His in family GH1 β-glycosidases. PMID:31072150
Phylogeny-guided characterization of glycosyltransferases for epothilone glycosylation. PMID:31069998
Corncob and sugar beet pulp induce specific sets of lignocellulolytic enzymes in Penicillium purpurogenum. PMID:31069125
Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat. PMID:31068923
Essential Mycoplasma Glycolipid Synthase Adheres to the Cell Membrane by Means of an Amphipathic Helix. PMID:31068620
Identification of a potential allosteric site of Golgi α-mannosidase II using computer-aided drug design. PMID:31067280
Bacteroidetes use thousands of enzyme combinations to break down glycans. PMID:31053724
Islands in the stream: from individual to communal fiber degradation in the rumen ecosystem. PMID:31050730
Major Traditional Probiotics: Comparative Genomic Analyses and Roles in Gut Microbiome of Eight Cohorts. PMID:31024492
A Bioinformatics View of Glycan⁻Virus Interactions. PMID:31018588
Selection of carbohydrate-active probiotics from the gut of carnivorous fish fed plant-based diets. PMID:31011158
Structural and mechanistic themes in glycoconjugate biosynthesis at membrane interfaces. PMID:31003021
Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria. PMID:31002736
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments. PMID:31000700
A surface-exposed GH26 β-mannanase from Bacteroides ovatus: Structure, role, and phylogenetic analysis of BoMan26B. PMID:31000630
Interaction of carbohydrate-binding modules with poly(ethylene terephthalate). PMID:30993383
Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment. PMID:30988376
Genomic Analyses of Bifidobacterium moukalabense Reveal Adaptations to Frugivore/Folivore Feeding Behavior. PMID:30987363
Genome-Wide Analysis of Glycoside Hydrolase Family 1 β-glucosidase Genes in Brassica rapa and Their Potential Role in Pollen Development. PMID:30987159
Metagenomic Insights Into a Cellulose-Rich Niche Reveal Microbial Cooperation in Cellulose Degradation. PMID:30984144
Data on draft genome sequence of Bacillus sp. strain VKPM B-3276 isolated from Culex pipiens larvae. PMID:30976634
Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism. PMID:30976325
Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots. PMID:30971198
croFGD: Catharanthus roseus Functional Genomics Database. PMID:30967897
Chitin Deacetylases: Structures, Specificities, and Biotech Applications. PMID:30966387
Infection-generated electric field in gut epithelium drives bidirectional migration of macrophages. PMID:30964858
Metagenomic Analysis of the Whole Gut Microbiota in Brazilian Termitidae Termites Cornitermes cumulans, Cyrilliotermes strictinasus, Syntermes dirus, Nasutitermes jaraguae, Nasutitermes aquilinus, Grigiotermes bequaerti, and Orthognathotermes mirim. PMID:30953134
The putative polysaccharide deacetylase Ba0331: cloning, expression, crystallization and structure determination. PMID:30950833
Insight into the role of α-arabinofuranosidase in biomass hydrolysis: cellulose digestibility and inhibition by xylooligomers. PMID:30949240
Curated BLAST for Genomes. PMID:30944879
Identification, classification, and evolution of putative xylosyltransferases from algae. PMID:30941581
Caulobacter crescentus Adapts to Phosphate Starvation by Synthesizing Anionic Glycoglycerolipids and a Novel Glycosphingolipid. PMID:30940701
Molecular Basis of Broad Spectrum N-Glycan Specificity and Processing of Therapeutic IgG Monoclonal Antibodies by Endoglycosidase S2. PMID:30937380
Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems. PMID:30936857
Unraveling the Contribution of High Temperature Stage to Jiang-Flavor Daqu, a Liquor Starter for Production of Chinese Jiang-Flavor Baijiu, With Special Reference to Metatranscriptomics. PMID:30930875
Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota. PMID:30925932
On the functional characterization of lytic polysaccharide monooxygenases (LPMOs). PMID:30923566
AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes. PMID:30923563
Draft Genome Sequence and Annotation of Oribacterium sp. Strain C9, Isolated from a Cattle Rumen. PMID:30923245
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. PMID:30918501
N-glycomic Complexity in Anatomical Simplicity: Caenorhabditis elegans as a Non-model Nematode? PMID:30915340
High-Throughput Approaches in Carbohydrate-Active Enzymology: Glycosidase and Glycosyl Transferase Inhibitors, Evolution, and Discovery. PMID:30913359
Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome. PMID:30913025
A novel thermostable GH10 xylanase with activities on a wide variety of cellulosic substrates from a xylanolytic Bacillus strain exhibiting significant synergy with commercial Celluclast 1.5 L in pretreated corn stover hydrolysis. PMID:30899328
New insights into the origin and evolution of α-amylase genes in green plants. PMID:30894656
16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics. PMID:30889210
Infection Strategies Deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a Function of Tomato Fruit Ripening Stage. PMID:30881367
Structural and functional analyses of glycoside hydrolase 138 enzymes targeting chain A galacturonic acid in the complex pectin rhamnogalacturonan II. PMID:30877196
Cytological, Biochemical and Molecular Events of the Embryogenic State in Douglas-fir (Pseudotsuga menziesii [Mirb.]). PMID:30873184
Biochemical and Functional Characterization of Glycoside Hydrolase Family 16 Genes in Aedes aegypti Larvae: Identification of the Major Digestive β-1,3-Glucanase. PMID:30873040
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space. PMID:30850540
The agar-specific hydrolase ZgAgaC from the marine bacterium Zobellia galactanivorans defines a new GH16 protein subfamily. PMID:30846563
Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides. PMID:30842872
Whole Cell Actinobacteria as Biocatalysts. PMID:30833932
Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families. PMID:30819804
Structure-function analyses reveal that a glucuronoyl esterase from Teredinibacter turnerae interacts with carbohydrates and aromatic compounds. PMID:30814248
Functionalized Cyclophellitols Are Selective Glucocerebrosidase Inhibitors and Induce a Bona Fide Neuropathic Gaucher Model in Zebrafish. PMID:30811188
Development of screening strategies for the identification of paramylon-degrading enzymes. PMID:30806871
The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans. PMID:30796211
Fight them or feed them: how the intestinal mucus layer manages the gut microbiota. PMID:30792861
Crystal structure and substrate interactions of an unusual fungal non-CBM carrying GH26 endo-β-mannanase from Yunnania penicillata. PMID:30783168
Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype. PMID:30782660
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. PMID:30782206
Protein O- and C-Glycosylation pathways in Toxoplasma gondii and Plasmodium falciparum. PMID:30773146
The Foliar Endophyte Phialocephala scopiformis DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source. PMID:30746512
Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom. PMID:30737347
Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon. PMID:30728469
Oligosaccharide Synthesis and Translational Innovation. PMID:30716271
Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses. PMID:30709821
Novel Zebrafish Mono-α2,8-sialyltransferase (ST8Sia VIII): An Evolutionary Perspective of α2,8-Sialylation. PMID:30709055
Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota. PMID:30701133
A Novel (1,4)-β-Linked Glucoxylan Is Synthesized by Members of the Cellulose Synthase-Like F Gene Family in Land Plants. PMID:30693327
Structure and Evolution of Glycogen Branching Enzyme N-Termini From Bacteria. PMID:30692986
Genetics behind the Biosynthesis of Nonulosonic Acid-Containing Lipooligosaccharides in Campylobacter coli. PMID:30692173
Carbon sources and XlnR-dependent transcriptional landscape of CAZymes in the industrial fungus Talaromyces versatilis: when exception seems to be the rule. PMID:30691469
Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase. PMID:30689844
A 2.08 Å resolution structure of HLB5, a novel cellulase from the anaerobic gut bacterium Parabacteroides johnsonii DSM 18315. PMID:30687968
Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases. PMID:30685401
Design and Synthesis of a Chitodisaccharide-Based Affinity Resin for Chitosanases Purification. PMID:30669556
Discovery and Characterization of FMN-Binding β-Glucuronidases in the Human Gut Microbiome. PMID:30658055
Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungus Talaromyces cellulolyticus. PMID:30655295
Trophic Specialization Results in Genomic Reduction in Free-Living Marine Idiomarina Bacteria. PMID:30647156
The structure of the AliC GH13 α-amylase from Alicyclobacillus sp. reveals the accommodation of starch branching points in the α-amylase family. PMID:30644839
Marine Sponges as Chloroflexi Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade. PMID:30637337
Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis. PMID:30637143
Discovery of a Thermostable GH10 Xylanase with Broad Substrate Specificity from the Arctic Mid-Ocean Ridge Vent System. PMID:30635385
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. PMID:30619412
Effect of Pentacyclic Guanidine Alkaloids from the Sponge Monanchora pulchra on Activity of α-Glycosidases from Marine Bacteria. PMID:30609674
Kinetic and molecular dynamics study of inhibition and transglycosylation in Hypocrea jecorina family 3 β-glucosidases. PMID:30602567
Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics. PMID:30601862
pH-Dependent Relationship between Catalytic Activity and Hydrogen Peroxide Production Shown via Characterization of a Lytic Polysaccharide Monooxygenase from Gloeophyllum trabeum. PMID:30578267
Contemporaneous radiations of fungi and plants linked to symbiosis. PMID:30575731
Online evaluation of the metabolic activity of Ustilago maydis on (poly)galacturonic acid. PMID:30574186
Complete Genome Sequence of Saccharospirillum mangrovi HK-33T Sheds Light on the Ecological Role of a Bacterium in Mangrove Sediment Environment. PMID:30564885
Activity and Thermostability of GH5 Endoglucanase Chimeras from Mesophilic and Thermophilic Parents. PMID:30552196
The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential. PMID:30541780
Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil. PMID:30538276
O-Fucosylation of thrombospondin-like repeats is required for processing of microneme protein 2 and for efficient host cell invasion by Toxoplasma gondii tachyzoites. PMID:30538131
The pKa values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme. PMID:30537432
Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones. PMID:30534609
Understanding the structural and functional properties of carbohydrate esterases with a special focus on hemicellulose deacetylating acetyl xylan esterases. PMID:30533253
Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome. PMID:30532085
Expression of an endoglucanase-cellobiohydrolase fusion protein in Saccharomyces cerevisiae, Yarrowia lipolytica, and Lipomyces starkeyi. PMID:30524504
A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements. PMID:30524406
Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9T to Adapt to Macroalgal Niches. PMID:30524390
The LPG1x family from Leishmania major is constituted of rare eukaryotic galactofuranosyltransferases with unprecedented catalytic properties. PMID:30514885
Structural studies of a glycoside hydrolase family 3 β-glucosidase from the model fungus Neurospora crassa. PMID:30511673
Proteomic Analysis of Plasmodesmata From Populus Cell Suspension Cultures in Relation With Callose Biosynthesis. PMID:30510561
Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligogalacturonates by Dickeya dadantii. PMID:30510137
Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome. PMID:30505946
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes. PMID:30505945
Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry. PMID:30504213
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. PMID:30487660
Functional Roles of Starch Binding Domains and Surface Binding Sites in Enzymes Involved in Starch Biosynthesis. PMID:30483298
Phenotypic and Genomic Properties of a Novel Deep-Lineage Haloalkaliphilic Member of the Phylum Balneolaeota From Soda Lakes Possessing Na+-Translocating Proteorhodopsin. PMID:30483225
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. PMID:30482201
Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species. PMID:30478233
CRISPR/Cas9 and glycomics tools for Toxoplasma glycobiology. PMID:30463938
Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates. PMID:30455672
Monensin Alters the Functional and Metabolomic Profile of Rumen Microbiota in Beef Cattle. PMID:30453603
GlcNAc De-N-Acetylase from the Hyperthermophilic Archaeon Sulfolobus solfataricus. PMID:30446550
The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei. PMID:30427852
The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. PMID:30425417
Novel Ethanol- and 5-Hydroxymethyl Furfural-Stimulated β-Glucosidase Retrieved From a Brazilian Secondary Atlantic Forest Soil Metagenome. PMID:30420843
Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems. PMID:30416497
Affinity to cellulose is a shared property among coiled-coil domains of intermediate filaments and prokaryotic intermediate filament-like proteins. PMID:30410115
Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in Trichoderma reesei RUT-30. PMID:30406095
Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family. PMID:30404596
The Many Ways by Which O-GlcNAcylation May Orchestrate the Diversity of Complex Glycosylations. PMID:30400201
Identification and characterization of GH11 xylanase and GH43 xylosidase from the chytridiomycetous fungus, Rhizophlyctis rosea. PMID:30397764
Comparative genomics of the major parasitic worms. PMID:30397333
Mutational Analysis of the Role of the Glucansucrase Gtf180-ΔN Active Site Residues in Product and Linkage Specificity with Lactose as Acceptor Substrate. PMID:30396274
A comparative structural analysis of the surface properties of asco-laccases. PMID:30395580
Tailor-made Janus lectin with dual avidity assembles glycoconjugate multilayers and crosslinks protocells. PMID:30393524
Novel Enzyme Actions for Sulphated Galactofucan Depolymerisation and a New Engineering Strategy for Molecular Stabilisation of Fucoidan Degrading Enzymes. PMID:30388774
US Immigration Westernizes the Human Gut Microbiome. PMID:30388453
De novo transcriptome assembly of the bamboo snout beetle Cyrtotrachelus buqueti reveals ability to degrade lignocellulose of bamboo feedstock. PMID:30386429
Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus. PMID:30382831
Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp. PMID:30379876
Paenibacillus amylolyticus 27C64 has a diverse set of carbohydrate-active enzymes and complete pectin deconstruction system. PMID:30377865
Screening of a Novel Polysaccharide Lyase Family 10 Pectate Lyase from Paenibacillus polymyxa KF-1: Cloning, Expression and Characterization. PMID:30373112
The Promoter Toolbox for Recombinant Gene Expression in Trichoderma reesei. PMID:30364340
Stability of Ferrihydrite-Humic Acid Coprecipitates under Iron-Reducing Conditions. PMID:30354092
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation. PMID:30349080
Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments. PMID:30345395
Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp. infantis EVC001. PMID:30338216
An AA9-LPMO containing a CBM1 domain in Aspergillus nidulans is active on cellulose and cleaves cello-oligosaccharides. PMID:30328527
A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex. PMID:30327429
Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants. PMID:30326954
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
Modulating Transcriptional Regulation of Plant Biomass Degrading Enzyme Networks for Rational Design of Industrial Fungal Strains. PMID:30320082
The Planktonic Core Microbiome and Core Functions in the Cattle Rumen by Next Generation Sequencing. PMID:30319585
An insight into gut microbiota and its functionalities. PMID:30317530
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. PMID:30315317
Engineering a branching sucrase for flavonoid glucoside diversification. PMID:30310109
New Irreversible α-l-Iduronidase Inhibitors and Activity-Based Probes. PMID:30307091
Three structurally and functionally distinct β-glucuronidases from the human gut microbe Bacteroides uniformis. PMID:30301767
Leveraging single-cell genomics to expand the fungal tree of life. PMID:30297742
Structure and function of a glycoside hydrolase family 8 endoxylanase from Teredinibacter turnerae. PMID:30289404
Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis. PMID:30267127
The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29. PMID:30262663
Structural and biochemical characterization of the Cutibacterium acnes exo-β-1,4-mannosidase that targets the N-glycan core of host glycoproteins. PMID:30261037
Deletion of a single glycosyltransferase in Caldicellulosiruptor bescii eliminates protein glycosylation and growth on crystalline cellulose. PMID:30258493
Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass. PMID:30257993
Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage. PMID:30256843
Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew. PMID:30253736
Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156). PMID:30249617
Characterization of Aspergillus niger Isolated from the International Space Station. PMID:30246146
Tick galactosyltransferases are involved in α-Gal synthesis and play a role during Anaplasma phagocytophilum infection and Ixodes scapularis tick vector development. PMID:30242261
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. PMID:30239928
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita. PMID:30239843
Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum. PMID:30228375
Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage. PMID:30228108
Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate. PMID:30223906
Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California. PMID:30219948
A New Group of Modular Xylanases in Glycoside Hydrolase Family 8 from Marine Bacteria. PMID:30217847
Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases. PMID:30211016
Suppression of Arabidopsis GGLT1 affects growth by reducing the L-galactose content and borate cross-linking of rhamnogalacturonan-II. PMID:30203879
Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. PMID:30202022
Mosquito-larvicidal binary toxin receptor protein (Cqm1): crystallization and X-ray crystallographic analysis. PMID:30198890
Structural features of a bacterial cyclic α-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis. PMID:30181215
Utilization of Host-Derived Glycans by Intestinal Lactobacillus and Bifidobacterium Species. PMID:30177920
Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera. PMID:30177919
Cross-Feeding among Probiotic Bacterial Strains on Prebiotic Inulin Involves the Extracellular exo-Inulinase of Lactobacillus paracasei Strain W20. PMID:30171006
The hemicellulose-degrading enzyme system of the thermophilic bacterium Clostridium stercorarium: comparative characterisation and addition of new hemicellulolytic glycoside hydrolases. PMID:30159029
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. PMID:30158906
A molecular switch orchestrates enzyme specificity and secretory granule morphology. PMID:30158631
Who's on base? Revealing the catalytic mechanism of inverting family 6 glycoside hydrolases. PMID:30155195
Reduced-Particle-Size Wheat Bran Is Efficiently Colonized by a Lactic Acid-Producing Community and Reduces Levels of Enterobacteriaceae in the Cecal Microbiota of Broilers. PMID:30143505
Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureus. PMID:30141354
Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V. PMID:30140003
Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX. PMID:30126456
Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila. PMID:30125294
Characterization of a Theme C Glycoside Hydrolase Family 9 Endo-Beta-Glucanase from a Biogas Reactor Metagenome. PMID:30123929
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi. PMID:30123665
Crystal Structures of the Catalytic Domain of Arabidopsis thaliana Starch Synthase IV, of Granule Bound Starch Synthase From CLg1 and of Granule Bound Starch Synthase I of Cyanophora paradoxa Illustrate Substrate Recognition in Starch Synthases. PMID:30123236
Optimizing the composition of a synthetic cellulosome complex for the hydrolysis of softwood pulp: identification of the enzymatic core functions and biochemical complex characterization. PMID:30116297
Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite. PMID:30116044
Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. PMID:30116038
Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. PMID:30111868
Complete genome sequence of Rhodothermaceae bacterium RA with cellulolytic and xylanolytic activities. PMID:30105201
Cloning and characterization of trehalase: a conserved glycosidase from oriental midge, Chironomus ramosus. PMID:30105177
Revealing the mechanism for covalent inhibition of glycoside hydrolases by carbasugars at an atomic level. PMID:30104598
Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica. PMID:30104475
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes. PMID:30097442
Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics. PMID:30087358
Structure of a Talaromyces pinophilus GH62 arabinofuranosidase in complex with AraDNJ at 1.25 Å resolution. PMID:30084398
Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes. PMID:30083230
Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion. PMID:30083226
Gut Microbial Carbohydrate Metabolism Hinders Weight Loss in Overweight Adults Undergoing Lifestyle Intervention With a Volumetric Diet. PMID:30077203
Evolutionary dynamics of host specialization in wood-decay fungi. PMID:30075699
Characterization of capsule genes in non-pathogenic Neisseria species. PMID:30074474
Effects of cre1 modification in the white-rot fungus Pleurotus ostreatus PC9: altering substrate preference during biological pretreatment. PMID:30065786
Structural and Evolutionary Insights within the Polysaccharide Deacetylase Gene Family of Bacillus anthracis and Bacillus cereus. PMID:30065210
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass. PMID:30061923
Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates. PMID:30061875
Understanding the Positional Binding and Substrate Interaction of a Highly Thermostable GH10 Xylanase from Thermotoga maritima by Molecular Docking. PMID:30061529
Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora. PMID:30060094
dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation. PMID:30053267
Enfumafungin synthase represents a novel lineage of fungal triterpene cyclases. PMID:30051576
Molecular Cloning and Characterization of a Novel α-Amylase from Antarctic Sea Ice Bacterium Pseudoalteromonas sp. M175 and Its Primary Application in Detergent. PMID:30050926
Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. PMID:30042744
Chitinase: diversity, limitations, and trends in engineering for suitable applications. PMID:30042170
Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus. PMID:30040824
"Sweet Flavonoids": Glycosidase-Catalyzed Modifications. PMID:30037103
Boosting of enzymatic softwood saccharification by fungal GH5 and GH26 endomannanases. PMID:30026809
Highly active enzymes by automated combinatorial backbone assembly and sequence design. PMID:30018322
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome. PMID:30013164
Product-oriented chemical surface modification of a levansucrase (SacB) via an ene-type reaction. PMID:30009003
Evaluating the mycostimulation potential of select carbon amendments for the degradation of a model PAH by an ascomycete strain enriched from a superfund site. PMID:30003496
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life. PMID:30001517
In silico analysis of the α-amylase family GH57: eventual subfamilies reflecting enzyme specificities. PMID:29998051
Analysis of transition state mimicry by tight binding aminothiazoline inhibitors provides insight into catalysis by human O-GlcNAcase. PMID:29997861
Structural basis of exo-β-mannanase activity in the GH2 family. PMID:29997257
Cellulases from Thermophiles Found by Metagenomics. PMID:29996513
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. PMID:29995839
Reversibility of a Point Mutation Induced Domain Shift: Expanding the Conformational Space of a Sucrose Phosphorylase. PMID:29993032
Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment. PMID:29991350
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Genomic and transcriptomic comparison of Aspergillus oryzae strains: a case study in soy sauce koji fermentation. PMID:29978373
Methylation of the N-terminal histidine protects a lytic polysaccharide monooxygenase from auto-oxidative inactivation. PMID:29971843
Discovery of UDP-Glycosyltransferases and BAHD-Acyltransferases Involved in the Biosynthesis of the Antidiabetic Plant Metabolite Montbretin A. PMID:29967287
Complete genome sequence of Bacillus sp. HBCD-sjtu, an efficient HBCD-degrading bacterium. PMID:29963351
Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade. PMID:29942291
A CAZyme-Rich Genome of a Taxonomically Novel Rhodophyte-Associated Carrageenolytic Marine Bacterium. PMID:29936557
Chitinolytic functions in actinobacteria: ecology, enzymes, and evolution. PMID:29931600
Production of Plant Secondary Metabolites: Examples, Tips and Suggestions for Biotechnologists. PMID:29925808
Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals. PMID:29925310
Novel Insights from Comparative In Silico Analysis of Green Microalgal Cellulases. PMID:29914107
The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut. PMID:29906260
Introduction of novel thermostable α-amylases from genus Anoxybacillus and proposing to group the Bacillaceae related α-amylases under five individual GH13 subfamilies. PMID:29904894
Distinct Substrate Specificities and Electron-Donating Systems of Fungal Lytic Polysaccharide Monooxygenases. PMID:29896168
Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasion. PMID:29894496
Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut. PMID:29884754
Structural and functional characterization of PL28 family ulvan lyase NLR48 from Nonlabens ulvanivorans. PMID:29875159
Conserved residues Arg188 and Asp302 are critical for active site organization and catalysis in human ABO(H) blood group A and B glycosyltransferases. PMID:29873711
Structural insights into the catalytic mechanism of a novel glycoside hydrolase family 113 β-1,4-mannanase from Amphibacillus xylanus. PMID:29871927
Combined Drug Resistance Mutations Substantially Enhance Enzyme Production in Paenibacillus agaridevorans. PMID:29866810
Exploring the Role of Cell Wall-Related Genes and Polysaccharides during Plant Development. PMID:29857498
An α-1,6-and α-1,3-linked glucan produced by Leuconostoc citreum ABK-1 alternansucrase with nanoparticle and film-forming properties. PMID:29844508
The evolution of genomic and epigenomic features in two Pleurotus fungi. PMID:29844491
Asexual Female Gametogenesis Involves Contact with a Sexually-Fated Megaspore in Apomictic Hieracium. PMID:29844228
Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo. PMID:29802288
Spiro-epoxyglycosides as Activity-Based Probes for Glycoside Hydrolase Family 99 Endomannosidase/Endomannanase. PMID:29797675
American Gut: an Open Platform for Citizen Science Microbiome Research. PMID:29795809
Ancient acquisition of "alginate utilization loci" by human gut microbiota. PMID:29795267
Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains. PMID:29794055
Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin. PMID:29782536
Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution. PMID:29780036
A Novel Enzyme Portfolio for Red Algal Polysaccharide Degradation in the Marine Bacterium Paraglaciecola hydrolytica S66T Encoded in a Sizeable Polysaccharide Utilization Locus. PMID:29774012
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. PMID:29771380
Comparative genome analysis of Bacillus velezensis reveals a potential for degrading lignocellulosic biomass. PMID:29765811
Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis. PMID:29764946
The Effect of Fucoidan from the Brown Alga Fucus evanescence on the Activity of α-N-Acetylgalactosaminidase of Human Colon Carcinoma Cells. PMID:29748462
Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization. PMID:29744280
Peeling the onion: the outer layers of Cryptococcus neoformans. PMID:29742198
Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization. PMID:29740413
Bacteroides thetaiotaomicron generates diverse α-mannosidase activities through subtle evolution of a distal substrate-binding motif. PMID:29717710
Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion. PMID:29713376
Mannanase hydrolysis of spruce galactoglucomannan focusing on the influence of acetylation on enzymatic mannan degradation. PMID:29713374
Mathematical Basis of Predicting Dominant Function in Protein Sequences by a Generic HMM-ANN Algorithm. PMID:29700659
Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species. PMID:29700415
Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 β-1,4-xylosidase from Geobacillus thermoleovorans IT-08. PMID:29698436
Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database. PMID:29697197
PgaB orthologues contain a glycoside hydrolase domain that cleaves deacetylated poly-β(1,6)-N-acetylglucosamine and can disrupt bacterial biofilms. PMID:29684093
Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specialization. PMID:29681893
β-Mannanase-catalyzed synthesis of alkyl mannooligosides. PMID:29680901
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. PMID:29679020
Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean. PMID:29670596
Identification of human glycosyltransferase genes expressed in erythroid cells predicts potential carbohydrate blood group loci. PMID:29662110
Role of Neuraminidase-Producing Bacteria in Exposing Cryptic Carbohydrate Receptors for Streptococcus gordonii Adherence. PMID:29661931
A sequence family database built on ECOD structural domains. PMID:29659718
Unraveling synthesis of the cryptococcal cell wall and capsule. PMID:29648596
Bioconversion of Chitin to Bioactive Chitooligosaccharides: Amelioration and Coastal Pollution Reduction by Microbial Resources. PMID:29637379
Evolution of a Vegetarian Vibrio: Metabolic Specialization of Vibrio breoganii to Macroalgal Substrates. PMID:29632094
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PMID:29630596
A plasmid borne, functionally novel glycoside hydrolase family 30 subfamily 8 endoxylanase from solventogenic Clostridium. PMID:29626157
Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse. PMID:29614953
Cloning and expression of a novel α-1,3-arabinofuranosidase from Penicillium oxalicum sp. 68. PMID:29611040
Characterisation of novel biomass degradation enzymes from the genome of Cellulomonas fimi. PMID:29602392
Microbial diversity of thermophiles with biomass deconstruction potential in a foliage-rich hot spring. PMID:29602271
Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary. PMID:29601586
Molecular cloning, expression, and functional characterization of the β-agarase AgaB-4 from Paenibacillus agarexedens. PMID:29594843
A chitinase with two catalytic domains is required for organization of the cuticular extracellular matrix of a beetle. PMID:29590098
Enhancing the catalytic activity of a novel GH5 cellulase GtCel5 from Gloeophyllum trabeum CBS 900.73 by site-directed mutagenesis on loop 6. PMID:29588661
A novel acetyl xylan esterase enabling complete deacetylation of substituted xylans. PMID:29588659
Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore. PMID:29587830
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases. PMID:29579191
Nutritional Support from the Intestinal Microbiota Improves Hematopoietic Reconstitution after Bone Marrow Transplantation in Mice. PMID:29576480
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens. PMID:29572208
Prebiotic Potential of Herbal Medicines Used in Digestive Health and Disease. PMID:29565634
Effect of CBM1 and linker region on enzymatic properties of a novel thermostable dimeric GH10 xylanase (Xyn10A) from filamentous fungus Aspergillus fumigatus Z5. PMID:29564574
The complete conformational free energy landscape of β-xylose reveals a two-fold catalytic itinerary for β-xylanases. PMID:29560204
The natural catalytic function of CuGE glucuronoyl esterase in hydrolysis of genuine lignin-carbohydrate complexes from birch. PMID:29560026
Molecular Networks of Postia placenta Involved in Degradation of Lignocellulosic Biomass Revealed from Metadata Analysis of Open Access Gene Expression Data. PMID:29559843
Studying microbial functionality within the gut ecosystem by systems biology. PMID:29556373
Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in Plants. PMID:29555787
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. PMID:29553575
Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. PMID:29551995
Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates. PMID:29551288
α2-6-Neosialidase: A Sialyltransferase Mutant as a Sialyl Linkage-Specific Sialidase. PMID:29543427
Draft Genome Sequence of Newly Isolated Agarolytic Bacteria Cellulophaga omnivescoria sp. nov. W5C Carrying Several Gene Loci for Marine Polysaccharide Degradation. PMID:29536113
Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse. PMID:29535687
Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont. PMID:29535379
Enhanced features of Dictyoglomus turgidum Cellulase A engineered with carbohydrate binding module 11 from Clostridium thermocellum. PMID:29535356
Draft Genome Sequence of Byssochlamys sp. Isolate BYSS01, a Filamentous Fungus Adapted to the Fuel Environment. PMID:29519843
Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-α-1,2-Mannanases. PMID:29508463
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement. PMID:29503654
Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca) May Not Be Specialized for Fiber Fermentation. PMID:29503636
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
The Ruminococci: key symbionts of the gut ecosystem. PMID:29492877
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen. PMID:29491419
FibroChip, a Functional DNA Microarray to Monitor Cellulolytic and Hemicellulolytic Activities of Rumen Microbiota. PMID:29487591
Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members. PMID:29487297
Handling gene and protein names in the age of bioinformatics: the special challenge of secreted multimodular bacterial enzymes such as the cbhA/cbh9A gene of Clostridium thermocellum. PMID:29480332
Identification of multiple isomeric core chitobiose-modified high-mannose and paucimannose N-glycans in the planarian Schmidtea mediterranea. PMID:29475940
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses. PMID:29475869
Complete Genome Sequence and Genomic Characterization of Lactobacillus acidophilus LA1 (11869BP). PMID:29472862
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. PMID:29472725
Landscape topography structures the soil microbiome in arctic polygonal tundra. PMID:29472560
The production, properties, and applications of thermostable steryl glucosidases. PMID:29468428
In vitro and in vivo characterization of three Cellvibrio japonicus glycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions. PMID:29467823
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. PMID:29467397
De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust. PMID:29463655
Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. PMID:29453368
Molecular and Functional Study of a Branching Sucrase-Like Glucansucrase Reveals an Evolutionary Intermediate between Two Subfamilies of the GH70 Enzymes. PMID:29453261
Structural Characterization and Directed Evolution of a Novel Acetyl Xylan Esterase Reveals Thermostability Determinants of the Carbohydrate Esterase 7 Family. PMID:29453256
Vegetative compatibility groups partition variation in the virulence of Verticillium dahliae on strawberry. PMID:29451893
Cloning and expression of an endoglucanase gene from the thermotolerant fungus Aspergillus fumigatus DBiNU-1 in Kluyveromyces lactis. PMID:29449177
Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli. PMID:29445215
Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria. PMID:29444825
SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets. PMID:29441125
Reconstruction of the sialylation pathway in the ancestor of eukaryotes. PMID:29440651
Characterization of a glycoside hydrolase family 78 α-l-rhamnosidase from Bacteroides thetaiotaomicron VPI-5482 and identification of functional residues. PMID:29430381
A chondroitin sulfate and hyaluronic acid lyase with poor activity to glucuronyl 4,6-O-disulfated N-acetylgalactosamine (E-type)-containing structures. PMID:29414785
Multiplicity of enzymatic functions in the CAZy AA3 family. PMID:29411063
Double blind microarray-based polysaccharide profiling enables parallel identification of uncharacterized polysaccharides and carbohydrate-binding proteins with unknown specificities. PMID:29410423
Expression and specificity of a chitin deacetylase from the nematophagous fungus Pochonia chlamydosporia potentially involved in pathogenicity. PMID:29391415
Substrate Recognition and Specificity of Chitin Deacetylases and Related Family 4 Carbohydrate Esterases. PMID:29385775
Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism. PMID:29382716
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation. PMID:29377002
The deduced role of a chitinase containing two nonsynergistic catalytic domains. PMID:29372897
Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy. PMID:29359269
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. PMID:29358710
Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice. PMID:29348581
Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms. PMID:29348510
Draft Genome Sequence of Fusarium fujikuroi, a Fungus Adapted to the Fuel Environment. PMID:29348356
Search for independent (β/α)4 subdomains in a (β/α)8 barrel β-glucosidase. PMID:29338043
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment. PMID:29326667
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads. PMID:29325570
Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides. PMID:29321239
Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149. PMID:29317507
Structural and mechanistic analysis of a β-glycoside phosphorylase identified by screening a metagenomic library. PMID:29317495
Protein profile in Aspergillus nidulans recombinant strains overproducing heterologous enzymes. PMID:29316319
Comparative genomic analyses reveal the features for adaptation to nematodes in fungi. PMID:29315395
Employing a biochemical protecting group for a sustainable indigo dyeing strategy. PMID:29309053
The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings. PMID:29305577
Enzyme Activities at Different Stages of Plant Biomass Decomposition in Three Species of Fungus-Growing Termites. PMID:29269491
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. PMID:29255254
Expression system for structural and functional studies of human glycosylation enzymes. PMID:29251719
A Large Polysaccharide Produced by Helicobacter hepaticus Induces an Anti-inflammatory Gene Signature in Macrophages. PMID:29241040
Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. PMID:29231813
Insights into substrate binding of ferulic acid esterases by arabinose and methyl hydroxycinnamate esters and molecular docking. PMID:29230049
Bacterial Succession on Sinking Particles in the Ocean's Interior. PMID:29225592
The genome sequence of Bipolaris cookei reveals mechanisms of pathogenesis underlying target leaf spot of sorghum. PMID:29222463
Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure. PMID:29213319
Structure of a Thermobifida fusca lytic polysaccharide monooxygenase and mutagenesis of key residues. PMID:29213309
Atmospheric trace gases support primary production in Antarctic desert surface soil. PMID:29211716
The interdomain flexible linker of the polypeptide GalNAc transferases dictates their long-range glycosylation preferences. PMID:29208955
Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal. PMID:29202039
Evolution of intron-poor clades and expression patterns of the glycosyltransferase family 47. PMID:29196940
Quantification of the catalytic performance of C1-cellulose-specific lytic polysaccharide monooxygenases. PMID:29196788
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. PMID:29196618
Moniliophthora roreri, causal agent of cacao frosty pod rot. PMID:29194910
Synthesis of Rhizobial Exopolysaccharides and Their Importance for Symbiosis with Legume Plants. PMID:29194398
Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia. PMID:29186370
Stereochemical Divergence of Polyprenol Phosphate Glycosyltransferases. PMID:29183665
Biochemical characterization of a thermostable endomannanase/endoglucanase from Dictyoglomus turgidum. PMID:29177717
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae. PMID:29170530
Expression-based clustering of CAZyme-encoding genes of Aspergillus niger. PMID:29169319
Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes. PMID:29167663
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches. PMID:29163426
Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs. PMID:29163419
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria. PMID:29162826
Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals. PMID:29162708
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme. PMID:29156585
Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars. PMID:29155571
In vitro and in vivo comparative and competitive activity-based protein profiling of GH29 α-l-fucosidases. PMID:29142681
Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut. PMID:29139580
Insights from the Genomes of Microbes Thriving in Uranium-Enriched Sediments. PMID:29128951
Carbohydrate active enzyme domains from extreme thermophiles: components of a modular toolbox for lignocellulose degradation. PMID:29110088
Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic β-galactosidase. PMID:29109294
Structure and function of a CE4 deacetylase isolated from a marine environment. PMID:29107991
Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization. PMID:29101194
Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial. PMID:29097438
Transition state-based ST6Gal I inhibitors: Mimicking the phosphodiester linkage with a triazole or carbamate through an enthalpy-entropy compensation. PMID:29089525
PULDB: the expanded database of Polysaccharide Utilization Loci. PMID:29088389
Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution. PMID:29088355
Dietary changes in nutritional studies shape the structural and functional composition of the pigs' fecal microbiome-from days to weeks. PMID:29078812
The Glycosyltransferases of LPS Core: A Review of Four Heptosyltransferase Enzymes in Context. PMID:29077008
Comparative characterization of all cellulosomal cellulases from Clostridium thermocellum reveals high diversity in endoglucanase product formation essential for complex activity. PMID:29075324
Sequence homolog-based molecular engineering for shifting the enzymatic pH optimum. PMID:29062943
Enzymatic synthesis of glycosides: from natural O- and N-glycosides to rare C- and S-glycosides. PMID:29062404
Structure of human lysosomal acid α-glucosidase-a guide for the treatment of Pompe disease. PMID:29061980
Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42. PMID:29061847
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. PMID:29057953
Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification. PMID:29052930
Carbohydrate-active enzymes in Trichoderma harzianum: a bioinformatic analysis bioprospecting for key enzymes for the biofuels industry. PMID:29025413
A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication. PMID:28981525
The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides. PMID:28971068
Novel archaeal thermostable cellulases from an oil reservoir metagenome. PMID:28963711
A High-Throughput Mass-Spectrometry-Based Assay for Identifying the Biochemical Functions of Putative Glycosidases. PMID:28960712
Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016). PMID:28960539
Purification, characterization, and statistical optimization of a thermostable α-amylase from desert actinobacterium Streptomyces fragilis DA7-7. PMID:28955647
RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger. PMID:28955445
Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes. PMID:28953947
Structural Basis for EarP-Mediated Arginine Glycosylation of Translation Elongation Factor EF-P. PMID:28951478
The Type IX Secretion System Is Required for Virulence of the Fish Pathogen Flavobacterium columnare. PMID:28939608
Crystal structures of eukaryote glycosyltransferases reveal biologically relevant enzyme homooligomers. PMID:28932871
How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313? PMID:28932263
Characterization of a cytoplasmic glucosyltransferase that extends the core trisaccharide of the Toxoplasma Skp1 E3 ubiquitin ligase subunit. PMID:28928220
Diversity of family GH46 chitosanases in Kitasatospora setae KM-6054. PMID:28924834
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil. PMID:28923122
Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system. PMID:28912832
Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis. PMID:28904741
Laminarinase from Flavobacterium sp. reveals the structural basis of thermostability and substrate specificity. PMID:28900273
Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone". PMID:28900024
Identification of endoxylanase XynE from Clostridium thermocellum as the first xylanase of glycoside hydrolase family GH141. PMID:28894250
BioFuelDB: a database and prediction server of enzymes involved in biofuels production. PMID:28875065
Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities. PMID:28865481
Transcriptome analysis reveals the host selection fitness mechanisms of the Rhizoctonia solani AG1IA pathogen. PMID:28860554
Evolution and functional characterization of CAZymes belonging to subfamily 10 of glycoside hydrolase family 5 (GH5_10) in two species of phytophagous beetles. PMID:28854242
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters. PMID:28851275
Metagenomic Analysis of Cecal Microbiome Identified Microbiota and Functional Capacities Associated with Feed Efficiency in Landrace Finishing Pigs. PMID:28848539
Picomolar inhibition of β-galactosidase (bovine liver) attributed to loop closure. PMID:28844803
Fungal Hybrid B heme peroxidases - unique fusions of a heme peroxidase domain with a carbohydrate-binding domain. PMID:28839281
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments. PMID:28835260
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. PMID:28831381
Characterization and molecular modeling of polygalacturonase isoforms from Saccharomyces cerevisiae. PMID:28828292
Properties of a family 56 carbohydrate-binding module and its role in the recognition and hydrolysis of β-1,3-glucan. PMID:28827308
Optimization of the biotechnological production of a novel class of anti-MRSA antibiotics from Chitinophaga sancti. PMID:28818083
Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis. PMID:28802264
Glycan Phosphorylases in Multi-Enzyme Synthetic Processes. PMID:28799504
Differential gene expression in tomato fruit and Colletotrichum gloeosporioides during colonization of the RNAi-SlPH tomato line with reduced fruit acidity and higher pH. PMID:28778147
1,6-Cyclophellitol Cyclosulfates: A New Class of Irreversible Glycosidase Inhibitor. PMID:28776021
Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family. PMID:28764658
Cellodextrin phosphorylase from Ruminiclostridium thermocellum: X-ray crystal structure and substrate specificity analysis. PMID:28760417
Glucosylglycerate Phosphorylase, an Enzyme with Novel Specificity Involved in Compatible Solute Metabolism. PMID:28754708
Structural basis for dolichylphosphate mannose biosynthesis. PMID:28743912
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation. PMID:28731473
High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864. PMID:28725336
Computational design of a symmetrical β-trefoil lectin with cancer cell binding activity. PMID:28724971
X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid. PMID:28724897
A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. PMID:28706005
Genome Sequence of Pseudomonas stutzeri 273 and Identification of the Exopolysaccharide EPS273 Biosynthesis Locus. PMID:28698510
Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018. PMID:28684563
Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of Zygaena larvae facilitates cyanide release. PMID:28680679
The Complex Cell Wall Composition of Syncytia Induced by Plant Parasitic Cyst Nematodes Reflects Both Function and Host Plant. PMID:28680436
Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei. PMID:28666414
The macrolide antibiotic renaissance. PMID:28664582
Differential β-glucosidase expression as a function of carbon source availability in Talaromyces amestolkiae: a genomic and proteomic approach. PMID:28649280
Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge. PMID:28649277
A single amino acid polymorphism in the glycosyltransferase CpsK defines four Streptococcus suis serotypes. PMID:28642597
Complete Genome Sequence of Bacillus paralicheniformis MDJK30, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity. PMID:28642380
An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins. PMID:28637865
Development of a High-Density SNP-Based Linkage Map and Detection of QTL for β-Glucans, Protein Content, Grain Yield per Spike and Heading Time in Durum Wheat. PMID:28635630
Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a. PMID:28634367
Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes. PMID:28598995
Exploiting fine-scale genetic and physiological variation of closely related microbes to reveal unknown enzyme functions. PMID:28592491
Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates. PMID:28588026
Comparative Study of Lectin Domains in Model Species: New Insights into Evolutionary Dynamics. PMID:28587095
An Atlas of β-Glucuronidases in the Human Intestinal Microbiome. PMID:28578872
Impaired coordination of nucleophile and increased hydrophobicity in the +1 subsite shift levansucrase activity towards transfructosylation. PMID:28575294
Plant Lectins and Lectin Receptor-Like Kinases: How Do They Sense the Outside? PMID:28561754
Metabolic network analysis reveals microbial community interactions in anammox granules. PMID:28561030
Genetic engineering of Trichoderma reesei cellulases and their production. PMID:28557371
Improving the thermostability of a fungal GH11 xylanase via site-directed mutagenesis guided by sequence and structural analysis. PMID:28546828
Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74. PMID:28546478
The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors. PMID:28546425
Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. PMID:28539641
Differences in Microbiota Membership along the Gastrointestinal Tract of Piglets and Their Differential Alterations Following an Early-Life Antibiotic Intervention. PMID:28536561
Comparative Genomics Unravels the Functional Roles of Co-occurring Acidophilic Bacteria in Bioleaching Heaps. PMID:28529505
Structure-function analysis of human sucrase-isomaltase identifies key residues required for catalytic activity. PMID:28522605
An iterative glycosyltransferase EntS catalyzes transfer and extension of O- and S-linked monosaccharide in enterocin 96. PMID:28498962
Structure and function of a broad-specificity chitin deacetylase from Aspergillus nidulans FGSC A4. PMID:28496100
Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks. PMID:28491137
Metagenomic Sequencing of Diamondback Moth Gut Microbiome Unveils Key Holobiont Adaptations for Herbivory. PMID:28491055
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep. PMID:28473812
Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting. PMID:28469608
Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases. PMID:28469382
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PMID:28467421
Innovating glycoside hydrolase activity on a same structural scaffold. PMID:28465442
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range. PMID:28464870
A Bacteroidetes locus dedicated to fungal 1,6-β-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-β-glucanase. PMID:28461332
Rational Engineering of a Cold-Adapted α-Amylase from the Antarctic Ciliate Euplotes focardii for Simultaneous Improvement of Thermostability and Catalytic Activity. PMID:28455329
Structure and function of a novel GH8 endoglucanase from the bacterial cellulose synthase complex of Raoultella ornithinolytica. PMID:28448629
Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses. PMID:28448616
SGNH hydrolase-type esterase domain containing Cbes-AcXE2: a novel and thermostable acetyl xylan esterase from Caldicellulosiruptor bescii. PMID:28444450
The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide. PMID:28443615
Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5. PMID:28432541
A bacterial ABC transporter enables import of mammalian host glycosaminoglycans. PMID:28432302
Two Distinct α-l-Arabinofuranosidases in Caldicellulosiruptor Species Drive Degradation of Arabinose-Based Polysaccharides. PMID:28432102
Characterisation of three fungal glucuronoyl esterases on glucuronic acid ester model compounds. PMID:28429057
Zwitterionic pyrrolidene-phosphonates: inhibitors of the glycoside hydrolase-like phosphorylase Streptomyces coelicolor GlgEI-V279S. PMID:28422240
Genomics insights into different cellobiose hydrolysis activities in two Trichoderma hamatum strains. PMID:28420406
An Extracellular Cell-Attached Pullulanase Confers Branched α-Glucan Utilization in Human Gut Lactobacillus acidophilus. PMID:28411221
EOGT and O-GlcNAc on secreted and membrane proteins. PMID:28408480
Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function. PMID:28403817
Unusual active site location and catalytic apparatus in a glycoside hydrolase family. PMID:28396425
The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown. PMID:28394946
A Phylogenetically Informed Comparison of GH1 Hydrolases between Arabidopsis and Rice Response to Stressors. PMID:28392792
Differential Proteomic Profiles of Pleurotus ostreatus in Response to Lignocellulosic Components Provide Insights into Divergent Adaptive Mechanisms. PMID:28386251
Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. PMID:28379546
Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress β-lactam antibiotic resistance. PMID:28370529
Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by Paludisphaera borealis PX4T, Isosphaera pallida IS1BT, Singulisphaera acidiphila DSM 18658T, and Strain SH-PL62. PMID:28360896
Mining of efficient microbial UDP-glycosyltransferases by motif evolution cross plant kingdom for application in biosynthesis of salidroside. PMID:28352078
Interbacterial Adhesion Networks within Early Oral Biofilms of Single Human Hosts. PMID:28341674
Draft Genome Sequence of the Mycoparasitic Oomycete Pythium periplocum Strain CBS 532.74. PMID:28336598
Complex pectin metabolism by gut bacteria reveals novel catalytic functions. PMID:28329766
Biochemistry: A wine-induced breakdown. PMID:28329754
The rare sugar N-acetylated viosamine is a major component of Mimivirus fibers. PMID:28314774
Transcriptomic Analyses Elucidate Adaptive Differences of Closely Related Strains of Pseudomonas aeruginosa in Fuel. PMID:28314727
Global Distribution Patterns and Pangenomic Diversity of the Candidate Phylum "Latescibacteria" (WS3). PMID:28314726
Distribution and diversity of enzymes for polysaccharide degradation in fungi. PMID:28302998
Identification and analysis of genes associated with the synthesis of bioactive constituents in Dendrobium officinale using RNA-Seq. PMID:28298629
Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast. PMID:28293247
A new group of glycoside hydrolase family 13 α-amylases with an aberrant catalytic triad. PMID:28287181
High yield production of Rhizobium NodB chitin deacetylase and its use for in vitro synthesis of lipo-chitinoligosaccharide precursors. PMID:28284052
Gene expression metadata analysis reveals molecular mechanisms employed by Phanerochaete chrysosporium during lignin degradation and detoxification of plant extractives. PMID:28275822
Characterization of Potential Polysaccharide Utilization Systems in the Marine Bacteroidetes Gramella Flava JLT2011 Using a Multi-Omics Approach. PMID:28261179
Catechol glucosides act as donor/acceptor substrates of glucansucrase enzymes of Lactobacillus reuteri. PMID:28258313
The mechanism behind the selection of two different cleavage sites in NAG-NAM polymers. PMID:28250957
The Cytosolic Oligosaccharide-Degrading Proteome of Butyrivibrio Proteoclasticus. PMID:28248275
Arabidopsis Regenerating Protoplast: A Powerful Model System for Combining the Proteomics of Cell Wall Proteins and the Visualization of Cell Wall Dynamics. PMID:28248244
Comparative "Golgi" Proteome Study of Lolium multiflorum and Populus trichocarpa. PMID:28248233
Characterization of a Bacillus thuringiensis chitinase that binds to cellulose and chitin. PMID:28244030
Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle. PMID:28235871
Trichoderma reesei xylanase 5 is defective in the reference strain QM6a but functional alleles are present in other wild-type strains. PMID:28229208
Cell Wall Remodeling in Abscission Zone Cells during Ethylene-Promoted Fruit Abscission in Citrus. PMID:28228766
The discovery of novel LPMO families with a new Hidden Markov model. PMID:28222763
Application of carbohydrate arrays coupled with mass spectrometry to detect activity of plant-polysaccharide degradative enzymes from the fungus Aspergillus niger. PMID:28220903
Accurate Quantification of Laminarin in Marine Organic Matter with Enzymes from Marine Microbes. PMID:28213541
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. PMID:28196534
Differences in Gut Metabolites and Microbial Composition and Functions between Egyptian and U.S. Children Are Consistent with Their Diets. PMID:28191503
Role of N-linked glycosylation in the enzymatic properties of a thermophilic GH 10 xylanase from Aspergillus fumigatus expressed in Pichia pastoris. PMID:28187141
Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. PMID:28184248
Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling. PMID:28184246
Complete Genome Sequence of Paenibacillus polymyxa YC0573, a Plant Growth-Promoting Rhizobacterium with Antimicrobial Activity. PMID:28183775
Stability and Ligand Promiscuity of Type A Carbohydrate-binding Modules Are Illustrated by the Structure of Spirochaeta thermophila StCBM64C. PMID:28179427
Glycoblocks: a schematic three-dimensional representation for glycans and their interactions. PMID:28177314
Strategies for carbohydrate model building, refinement and validation. PMID:28177313
Dietary fiber and prebiotics and the gastrointestinal microbiota. PMID:28165863
Genome Sequence of Microbulbifer mangrovi DD-13T Reveals Its Versatility to Degrade Multiple Polysaccharides. PMID:28161851
Eng1 and Exg8 Are the Major β-Glucanases Secreted by the Fungal Pathogen Histoplasma capsulatum. PMID:28154008
Draft genome sequence of Karnal bunt pathogen (Tilletia indica) of wheat provides insights into the pathogenic mechanisms of quarantined fungus. PMID:28152050
Protein Bioinformatics Databases and Resources. PMID:28150231
Polysaccharide Utilization Loci: Fueling Microbial Communities. PMID:28138099
Single polysaccharide assembly protein that integrates polymerization, termination, and chain-length quality control. PMID:28137848
The Structure of an Archaeal β-Glucosaminidase Provides Insight into Glycoside Hydrolase Evolution. PMID:28130448
Distinct Growth and Secretome Strategies for Two Taxonomically Divergent Brown Rot Fungi. PMID:28130302
Human Chitotriosidase Is an Endo-Processive Enzyme. PMID:28129403
Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates. PMID:28126934
Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation. PMID:28123349
Systems analysis in Cellvibrio japonicus resolves predicted redundancy of β-glucosidases and determines essential physiological functions. PMID:28118504
Mechanistic Study of Utilization of Water-Insoluble Saccharomyces cerevisiae Glucans by Bifidobacterium breve Strain JCM1192. PMID:28115383
A Highly Active Endo-Levanase BT1760 of a Dominant Mammalian Gut Commensal Bacteroides thetaiotaomicron Cleaves Not Only Various Bacterial Levans, but Also Levan of Timothy Grass. PMID:28103254
Amylose recognition and ring-size determination of amylomaltase. PMID:28097217
Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age. PMID:28095919
Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization. PMID:28091548
Prebiotic galactooligosaccharides activate mucin and pectic galactan utilization pathways in the human gut symbiont Bacteroides thetaiotaomicron. PMID:28091546
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic. PMID:28091525
Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau. PMID:28087533
Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP). PMID:28083757
Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system. PMID:28078050
Biochemical and Structural Insights into a Novel Thermostable β-1,3-Galactosidase from Marinomonas sp. BSi20414. PMID:28075353
Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi. PMID:28074929
Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome. PMID:28070679
The Complete Genome Sequence of Hyperthermophile Dictyoglomus turgidum DSM 6724™ Reveals a Specialized Carbohydrate Fermentor. PMID:28066333
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
4,3-α-Glucanotransferase, a novel reaction specificity in glycoside hydrolase family 70 and clan GH-H. PMID:28059108
A β-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism. PMID:28058278
Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence. PMID:28056108
ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium. PMID:28053168
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. PMID:28053165
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Inhibition of Mammalian Glycoprotein YKL-40: IDENTIFICATION OF THE PHYSIOLOGICAL LIGAND. PMID:28053085
Structure prediction and network analysis of chitinases from the Cape sundew, Drosera capensis. PMID:28040565
Novel product specificity toward erlose and panose exhibited by multisite engineered mutants of amylosucrase. PMID:28019698
Structure and Polymannuronate Specificity of a Eukaryotic Member of Polysaccharide Lyase Family 14. PMID:28011642
Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. PMID:28004877
Glycoside Hydrolases across Environmental Microbial Communities. PMID:27992426
Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-α-1,2-Mannanase. PMID:27992199
Comparative Transcriptomic Analysis of Virulence Factors in Leptosphaeria maculans during Compatible and Incompatible Interactions with Canola. PMID:27990146
Structure and Mechanism of Staphylococcus aureus TarS, the Wall Teichoic Acid β-glycosyltransferase Involved in Methicillin Resistance. PMID:27973583
Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils. PMID:27965632
Catalytic Mechanism of a Novel Glycoside Hydrolase Family 16 "Elongating" β-Transglycosylase. PMID:27956553
Soluble and Membrane-Bound β-Glucosidases Are Involved in Trimming the Xyloglucan Backbone. PMID:27956490
Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides. PMID:27941816
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles. PMID:27938347
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures. PMID:27936240
Using the Amino Acid Network to Modulate the Hydrolytic Activity of β-Glycosidases. PMID:27936116
Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2). PMID:27930742
Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science. PMID:27929431
New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability. PMID:27917893
Studying Secondary Growth and Bast Fiber Development: The Hemp Hypocotyl Peeks behind the Wall. PMID:27917184
Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery. PMID:27907169
The Production and Utilization of GDP-glucose in the Biosynthesis of Trehalose 6-Phosphate by Streptomyces venezuelae. PMID:27903647
Loss of Inositol Phosphorylceramide Sphingolipid Mannosylation Induces Plant Immune Responses and Reduces Cellulose Content in Arabidopsis. PMID:27895225
Infant food applications of complex carbohydrates: Structure, synthesis, and function. PMID:27883906
Systems Genetics Identifies a Novel Regulatory Domain of Amylose Synthesis. PMID:27881726
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. PMID:27875982
Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A β-MANNANASE. PMID:27872187
Recreating the synthesis of starch granules in yeast. PMID:27871361
Biochemical characterization and synergism of cellulolytic enzyme system from Chaetomium globosum on rice straw saccharification. PMID:27871321
Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases. PMID:27859885
Differences in glycosyltransferase family 61 accompany variation in seed coat mucilage composition in Plantago spp. PMID:27856710
Genome Sequence of Formosa haliotis Strain MA1, a Brown Alga-Degrading Bacterium Isolated from the Gut of Abalone Haliotis gigantea. PMID:27856598
Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil. PMID:27855202
Lytic polysaccharide monooxygenases: a crystallographer's view on a new class of biomass-degrading enzymes. PMID:27840684
Transcriptional Basis of Drought-Induced Susceptibility to the Rice Blast Fungus Magnaporthe oryzae. PMID:27833621
Characterization of two novel heat-active α-galactosidases from thermophilic bacteria. PMID:27830410
Characterization of the starch-acting MaAmyB enzyme from Microbacterium aurum B8.A representing the novel subfamily GH13_42 with an unusual, multi-domain organization. PMID:27808246
Evidence of the presence of nucleic acids and β-glucan in the matrix of non-typeable Haemophilus influenzae in vitro biofilms. PMID:27805043
Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications. PMID:27795736
Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase. PMID:27777307
mdRNA-Seq analysis of marine microbial communities from the northern Red Sea. PMID:27759035
Horizontal Transfer of a Novel Soil Agarase Gene from Marine Bacteria to Soil Bacteria via Human Microbiota. PMID:27756908
BcsZ inhibits biofilm phenotypes and promotes virulence by blocking cellulose production in Salmonella enterica serovar Typhimurium. PMID:27756305
Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity. PMID:27749924
Structural determinants of alternating (α1 → 4) and (α1 → 6) linkage specificity in reuteransucrase of Lactobacillus reuteri. PMID:27748434
Multiple cellobiohydrolases and cellobiose phosphorylases cooperate in the ruminal bacterium Ruminococcus albus 8 to degrade cellooligosaccharides. PMID:27748409
Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure. PMID:27744149
Microbial legacies alter decomposition in response to simulated global change. PMID:27740610
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes. PMID:27729905
The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal-Microbe Interactions of Ecological Relevance. PMID:27721806
Glycoside hydrolases family 20 (GH20) represent putative virulence factors that are shared by animal pathogenic oomycetes, but are absent in phytopathogens. PMID:27716041
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome. PMID:27712009
The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains. PMID:27710940
Pectins, Endopolygalacturonases, and Bioenergy. PMID:27703463
Microbial Glucuronoyl Esterases: 10 Years after Discovery. PMID:27694239
High-throughput Screening of Carbohydrate-degrading Enzymes Using Novel Insoluble Chromogenic Substrate Assay Kits. PMID:27684747
Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 β-Glycosidase from Saccharophagus degradans. PMID:27670285
Novel Trifunctional Xylanolytic Enzyme Axy43A from Paenibacillus curdlanolyticus Strain B-6 Exhibiting Endo-Xylanase, β-d-Xylosidase, and Arabinoxylan Arabinofuranohydrolase Activities. PMID:27663030
Schizophyllum commune has an extensive and functional alternative splicing repertoire. PMID:27659065
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. PMID:27634999
Identification, Characterization, and Expression Analysis of Cell Wall Related Genes in Sorghum bicolor (L.) Moench, a Food, Fodder, and Biofuel Crop. PMID:27630645
Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta. PMID:27621450
A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties. PMID:27621314
Evolution and Ecology of Actinobacteria and Their Bioenergy Applications. PMID:27607553
Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. PMID:27605927
Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57. PMID:27602182
Complete Genome Sequence of Cryobacterium arcticum Strain PAMC 27867, Isolated from a Sedimentary Rock Sample in Northern Victoria Land, Antarctica. PMID:27587812
Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress. PMID:27582273
Interaction mode between catalytic and regulatory subunits in glucosidase II involved in ER glycoprotein quality control. PMID:27576940
Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes. PMID:27576702
In silico Identification and Taxonomic Distribution of Plant Class C GH9 Endoglucanases. PMID:27570528
Draft Genome Sequence of Cellulolytic and Xylanolytic Cellulomonas sp. Strain B6 Isolated from Subtropical Forest Soil. PMID:27563050
The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions. PMID:27559336
Biological roles of glycans. PMID:27558841
Characterization of a novel low-temperature-active, alkaline and sucrose-tolerant invertase. PMID:27553125
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. PMID:27552843
Soil and leaf litter metaproteomics-a brief guideline from sampling to understanding. PMID:27549116
A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp. strain C1A. PMID:27547582
Biochemical Characterization of Bifunctional 3-Deoxy-β-d-manno-oct-2-ulosonic Acid (β-Kdo) Transferase KpsC from Escherichia coli Involved in Capsule Biosynthesis. PMID:27535220
Ligand-bound Structures and Site-directed Mutagenesis Identify the Acceptor and Secondary Binding Sites of Streptomyces coelicolor Maltosyltransferase GlgE. PMID:27531751
The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans. PMID:27531750
Carboxylic ester hydrolases: Classification and database derived from their primary, secondary, and tertiary structures. PMID:27530203
SEDS proteins are a widespread family of bacterial cell wall polymerases. PMID:27525505
Metabolic Network for the Biosynthesis of Intra- and Extracellular α-Glucans Required for Virulence of Mycobacterium tuberculosis. PMID:27513637
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes. PMID:27512389
Membranome: a database for proteome-wide analysis of single-pass membrane proteins. PMID:27510400
Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose. PMID:27508003
The genome of the emerging barley pathogen Ramularia collo-cygni. PMID:27506390
Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes. PMID:27504624
Investigation of glycan evolution based on a comprehensive analysis of glycosyltransferases using phylogenetic profiling. PMID:27493855
Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of α-dystroglycan. PMID:27493216
The impact of aminopyrene trisulfonate (APTS) label in acceptor glycan substrates for profiling plant pectin β-galactosyltransferase activities. PMID:27479753
The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. PMID:27466450
Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut. PMID:27466444
Post-Synthetic Defucosylation of AGP by Aspergillus nidulans α-1,2-Fucosidase Expressed in Arabidopsis Apoplast Induces Compensatory Upregulation of α-1,2-Fucosyltransferases. PMID:27448235
Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut. PMID:27446020
Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. PMID:27436133
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi. PMID:27434633
Coordinate Regulation of Metabolite Glycosylation and Stress Hormone Biosynthesis by TT8 in Arabidopsis. PMID:27432888
Structural analysis of Notch-regulating Rumi reveals basis for pathogenic mutations. PMID:27428513
Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches. PMID:27418359
Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanases and polygalacturonases of Fusarium virguliforme. PMID:27405320
Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern. PMID:27391812
Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. PMID:27389966
Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential. PMID:27389260
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential. PMID:27389259
Bifidobacteria and Their Role as Members of the Human Gut Microbiota. PMID:27379055
Structural and functional studies of the glycoside hydrolase family 3 β-glucosidase Cel3A from the moderately thermophilic fungus Rasamsonia emersonii. PMID:27377383
Expression pattern in retinal photoreceptors of POMGnT1, a protein involved in muscle-eye-brain disease. PMID:27375352
It All Starts with a Sandwich: Identification of Sialidases with Trans-Glycosylation Activity. PMID:27367145
Natural diversity of cellulases, xylanases, and chitinases in bacteria. PMID:27366206
Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. PMID:27358428
Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions. PMID:27356770
Effects of the linker region on the structure and function of modular GH5 cellulases. PMID:27334041
Crystal structure of an acetyl esterase complexed with acetate ion provides insights into the catalytic mechanism. PMID:27329813
Differential Utilization of Basic Proline-Rich Glycoproteins during Growth of Oral Bacteria in Saliva. PMID:27316966
The Glycoside Hydrolase Family 8 Reducing-End Xylose-Releasing Exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 Is Active on Branched Xylooligosaccharides. PMID:27316951
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). PMID:27313837
Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose. PMID:27312718
Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants. PMID:27303427
Transgenic Plant-Produced Hydrolytic Enzymes and the Potential of Insect Gut-Derived Hydrolases for Biofuels. PMID:27303411
Fidelity and Promiscuity of a Mycobacterial Glycosyltransferase. PMID:27302377
Two Novel Glycoside Hydrolases Responsible for the Catabolism of Cyclobis-(1→6)-α-nigerosyl. PMID:27302067
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. PMID:27300277
Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition. PMID:27298375
Characterization of a NaCl-tolerant β-N-acetylglucosaminidase from Sphingobacterium sp. HWLB1. PMID:27295219
Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei. PMID:27287427
Detection of Active Mammalian GH31 α-Glucosidases in Health and Disease Using In-Class, Broad-Spectrum Activity-Based Probes. PMID:27280170
Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. PMID:27279900
Sequence- and Structure-Based Functional Annotation and Assessment of Metabolic Transporters in Aspergillus oryzae: A Representative Case Study. PMID:27274991
Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. PMID:27274783
A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination. PMID:27274356
Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus. PMID:27263016
Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.). PMID:27253872
A novel glucuronosyltransferase has an unprecedented ability to catalyse continuous two-step glucuronosylation of glycyrrhetinic acid to yield glycyrrhizin. PMID:27252088
Discovery of a Novel Alginate Lyase from Nitratiruptor sp. SB155-2 Thriving at Deep-sea Hydrothermal Vents and Identification of the Residues Responsible for Its Heat Stability. PMID:27231344
The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases. PMID:27223845
Identification of a Vitis vinifera endo-β-1,3-glucanase with antimicrobial activity against Plasmopara viticola. PMID:27216084
Extensive horizontal gene transfers between plant pathogenic fungi. PMID:27215567
Salt-responsive lytic polysaccharide monooxygenases from the mangrove fungus Pestalotiopsis sp. NCi6. PMID:27213015
Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts. PMID:27211869
Expression and Characterization of Hyperthermostable Exo-polygalacturonase TtGH28 from Thermotoga thermophilus. PMID:27209035
Flashy flagella: flagellin modification is relatively common and highly versatile among the Enterobacteriaceae. PMID:27206480
Genome Structure of the Symbiont Bifidobacterium pseudocatenulatum CECT 7765 and Gene Expression Profiling in Response to Lactulose-Derived Oligosaccharides. PMID:27199952
Exploring the Synergy between Cellobiose Dehydrogenase from Phanerochaete chrysosporium and Cellulase from Trichoderma reesei. PMID:27199949
Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase. PMID:27199905
Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99). PMID:27199480
A Gene of the β3-Glycosyltransferase Family Encodes N-Acetylglucosaminyltransferase II Function in Trypanosoma brucei. PMID:27189951
Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199. PMID:27186238
Secretory production of a beta-mannanase and a chitosanase using a Lactobacillus plantarum expression system. PMID:27176608
Formation of starch in plant cells. PMID:27166931
Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study. PMID:27166072
Structure-function relationships of family GH70 glucansucrase and 4,6-α-glucanotransferase enzymes, and their evolutionary relationships with family GH13 enzymes. PMID:27155661
Remarkable evolutionary relatedness among the enzymes and proteins from the α-amylase family. PMID:27154042
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PMID:27153332
Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression. PMID:27150814
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. PMID:27150427
Mechanism of Human Nucleocytoplasmic Hexosaminidase D. PMID:27149221
Unique carbohydrate binding platforms employed by the glucan phosphatases. PMID:27147465
Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum. PMID:27146851
GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families. PMID:27141938
α-Glucosidases and α-1,4-glucan lyases: structures, functions, and physiological actions. PMID:27137181
Structure and function of α-glucan debranching enzymes. PMID:27137180
Heterogeneity in the Histidine-brace Copper Coordination Sphere in Auxiliary Activity Family 10 (AA10) Lytic Polysaccharide Monooxygenases. PMID:27129229
Biofilm Exopolysaccharides of Pathogenic Fungi: Lessons from Bacteria. PMID:27129222
Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems. PMID:27125755
Bacterial β-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2). PMID:27115290
X-Ray Crystal Structure of the Full Length Human Chitotriosidase (CHIT1) Reveals Features of Its Chitin Binding Domain. PMID:27111557
Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion. PMID:27107121
Draft Genome Sequence of a Novel Marine Bacterium, Paraglaciecola sp. Strain S66, with Hydrolytic Activity against Seaweed Polysaccharides. PMID:27103729
A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans. PMID:27091363
Draft Genome Sequence of Biocontrol Agent Pythium oligandrum Strain Po37, an Oomycota. PMID:27081125
Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray. PMID:27072675
Draft Genome Sequence of Zymomonas mobilis ZM481 (ATCC 31823). PMID:27056218
Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. PMID:27054497
Glucansucrase Gtf180-ΔN of Lactobacillus reuteri 180: enzyme and reaction engineering for improved glycosylation of non-carbohydrate molecules. PMID:27052379
Crystal structure of a putative exo-β-1,3-galactanase from Bifidobacterium bifidum S17. PMID:27050262
Genetic Diversity and Genome Wide Association Study of β-Glucan Content in Tetraploid Wheat Grains. PMID:27045166
Phylogenetic analysis of β-xylanase SRXL1 of Sporisorium reilianum and its relationship with families (GH10 and GH11) of Ascomycetes and Basidiomycetes. PMID:27040368
Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis. PMID:27035119
Production of a high-efficiency cellulase complex via β-glucosidase engineering in Penicillium oxalicum. PMID:27034716
Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism. PMID:27032335
Transcriptome analyses of insect cells to facilitate baculovirus-insect expression. PMID:27017378
Ligand-binding specificity and promiscuity of the main lignocellulolytic enzyme families as revealed by active-site architecture analysis. PMID:27009476
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes. PMID:26988094
Crystal structure of Anoxybacillus α-amylase provides insights into maltose binding of a new glycosyl hydrolase subclass. PMID:26975884
Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses. PMID:26973633
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
Isolation and Complete Genome Sequence of Algibacter alginolytica sp. nov., a Novel Seaweed-Degrading Bacteroidetes Bacterium with Diverse Putative Polysaccharide Utilization Loci. PMID:26969704
Mechanisms involved in xyloglucan catabolism by the cellulosome-producing bacterium Ruminiclostridium cellulolyticum. PMID:26946939
Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. PMID:26945779
Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. PMID:26941731
Structural mechanisms of plant glucan phosphatases in starch metabolism. PMID:26934589
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. PMID:26928935
A Novel Glycoside Hydrolase Family 113 Endo-β-1,4-Mannanase from Alicyclobacillus sp. Strain A4 and Insight into the Substrate Recognition and Catalytic Mechanism of This Family. PMID:26921423
A New Member of Family 11 Polysaccharide Lyase, Rhamnogalacturonan Lyase (CtRGLf) from Clostridium thermocellum. PMID:26921189
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. PMID:26920945
Maltase protein of Ogataea (Hansenula) polymorpha is a counterpart to the resurrected ancestor protein ancMALS of yeast maltases and isomaltases. PMID:26919272
Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform. PMID:26915788
Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site. PMID:26913091
Engineering broad-spectrum digestion of polyuronides from an exolytic polysaccharide lyase. PMID:26913076
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes. PMID:26912365
Genomic and transcriptomic analysis of carbohydrate utilization by Paenibacillus sp. JDR-2: systems for bioprocessing plant polysaccharides. PMID:26912334
Identification and Evolution of Functional Alleles of the Previously Described Pollen Specific Myrosinase Pseudogene AtTGG6 in Arabidopsis thaliana. PMID:26907263
Diversity in Biosynthetic Pathways of Galactolipids in the Light of Endosymbiotic Origin of Chloroplasts. PMID:26904079
Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus. PMID:26903998
Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. family GH3 β-D-glucosidases. PMID:26894673
Recent Developments in Using Advanced Sequencing Technologies for the Genomic Studies of Lignin and Cellulose Degrading Microorganisms. PMID:26884714
Mechanism of a cytosolic O-glycosyltransferase essential for the synthesis of a bacterial adhesion protein. PMID:26884191
YihQ is a sulfoquinovosidase that cleaves sulfoquinovosyl diacylglyceride sulfolipids. PMID:26878550
Structural and Biochemical Insights into the Peptidoglycan Hydrolase Domain of FlgJ from Salmonella typhimurium. PMID:26871950
Structural Insights into the Carbohydrate Binding Ability of an α-(1→2) Branching Sucrase from Glycoside Hydrolase Family 70. PMID:26865636
Urinary chitinase 3-like protein 1 for early diagnosis of acute kidney injury: a prospective cohort study in adult critically ill patients. PMID:26864834
The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species. PMID:26864432
Sialidases from gut bacteria: a mini-review. PMID:26862202
Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach. PMID:26859770
Structural and Functional Analysis of a Lytic Polysaccharide Monooxygenase Important for Efficient Utilization of Chitin in Cellvibrio japonicus. PMID:26858252
A proactive role of water molecules in acceptor recognition by protein O-fucosyltransferase 2. PMID:26854667
A review of the new HGNC gene family resource. PMID:26842383
Characterising Complex Enzyme Reaction Data. PMID:26840640
Genomic and secretomic insight into lignocellulolytic system of an endophytic bacterium Pantoea ananatis Sd-1. PMID:26839588
Enzymatic hydrolysis of biomass from wood. PMID:26833542
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. PMID:26824177
Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species. PMID:26814128
Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts. PMID:26811357
The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger. PMID:26780227
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. PMID:26779135
Identification of a novel family of carbohydrate-binding modules with broad ligand specificity. PMID:26765840
Characterization of the First α-(1→3) Branching Sucrases of the GH70 Family. PMID:26763236
Diet-induced extinctions in the gut microbiota compound over generations. PMID:26762459
Metabolic engineering of Clostridium cellulolyticum for the production of n-butanol from crystalline cellulose. PMID:26758196
The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity toward β-Glucans. PMID:26755730
Identification of the Gene Encoding Isoprimeverose-producing Oligoxyloglucan Hydrolase in Aspergillus oryzae. PMID:26755723
Modulation of the human gut microbiota by dietary fibres occurs at the species level. PMID:26754945
Thermostable microbial xylanases for pulp and paper industries: trends, applications and further perspectives. PMID:26754672
Discovery and Characterization of a Thermostable and Highly Halotolerant GH5 Cellulase from an Icelandic Hot Spring Isolate. PMID:26741138
A GH115 α-glucuronidase from Schizophyllum commune contributes to the synergistic enzymatic deconstruction of softwood glucuronoarabinoxylan. PMID:26734072
The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria. PMID:26734000
Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization. PMID:26729713
Amy63, a novel type of marine bacterial multifunctional enzyme possessing amylase, agarase and carrageenase activities. PMID:26725302
The impact of a single-nucleotide mutation of bgl2 on cellulase induction in a Trichoderma reesei mutant. PMID:26719764
New Coffee Plant-Infecting Xylella fastidiosa Variants Derived via Homologous Recombination. PMID:26712553
Comparative Analysis of Transcriptomes from Secondary Reproductives of Three Reticulitermes Termite Species. PMID:26698123
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. PMID:26692083
Identification of the nucleophile catalytic residue of GH51 α-L-arabinofuranosidase from Pleurotus ostreatus. PMID:26690659
Subsite-specific contributions of different aromatic residues in the active site architecture of glycoside hydrolase family 12. PMID:26670009
A unique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain glycoside hydrolase family 3 β-N-acetylglucosaminidase. PMID:26669854
Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens. PMID:26660105
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. PMID:26643441
Identification and Structural Analysis of Amino Acid Substitutions that Increase the Stability and Activity of Aspergillus niger Glucose Oxidase. PMID:26642312
Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85. PMID:26629814
Metasecretome analysis of a lignocellulolytic microbial consortium grown on wheat straw, xylan and xylose. PMID:26628913
The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract. PMID:26626322
Engineering a thermostable Halothermothrix orenii β-glucosidase for improved galacto-oligosaccharide synthesis. PMID:26621798
"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography. PMID:26601228
Comparative genomics and metabolic profiling of the genus Lysobacter. PMID:26597042
Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment. PMID:26590291
Draft genome sequence of Cellulomonas carbonis T26(T) and comparative analysis of six Cellulomonas genomes. PMID:26587181
Lignocellulose degradation mechanisms across the Tree of Life. PMID:26583519
Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities. PMID:26579098
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea. PMID:26573375
Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module. PMID:26562160
The GH5 1,4-β-mannanase from Bifidobacterium animalis subsp. lactis Bl-04 possesses a low-affinity mannan-binding module and highlights the diversity of mannanolytic enzymes. PMID:26558435
Global Profiling of Carbohydrate Active Enzymes in Human Gut Microbiome. PMID:26544883
Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions. PMID:26527115
In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID. PMID:26524303
More Than Just Oligomannose: An N-glycomic Comparison of Penicillium Species. PMID:26515459
ArnT proteins that catalyze the glycosylation of lipopolysaccharide share common features with bacterial N-oligosaccharyltransferases. PMID:26515403
Functional demonstrations of starch binding domains present in Ostreococcus tauri starch synthases isoforms. PMID:26510916
Characterization of the Functional Roles of Amino Acid Residues in Acceptor-binding Subsite +1 in the Active Site of the Glucansucrase GTF180 from Lactobacillus reuteri 180. PMID:26507662
Structure-Function Analysis of a Mixed-linkage β-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4. PMID:26507654
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut. PMID:26506949
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. PMID:26505484
Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1). PMID:26504082
Draft Genome Sequence of Cellulolytic and Xylanolytic Paenibacillus sp. A59, Isolated from Decaying Forest Soil from Patagonia, Argentina. PMID:26494679
Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems. PMID:26489930
Complete Genome Sequence of Thermus aquaticus Y51MC23. PMID:26465632
Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants. PMID:26454013
Adaptations of the Secretome of Candida albicans in Response to Host-Related Environmental Conditions. PMID:26453650
Growth of Chitinophaga pinensis on Plant Cell Wall Glycans and Characterisation of a Glycoside Hydrolase Family 27 β-l-Arabinopyranosidase Implicated in Arabinogalactan Utilisation. PMID:26448175
Recombinant protein production facility for fungal biomass-degrading enzymes using the yeast Pichia pastoris. PMID:26441929
Coevolution of yeast mannan digestion: Convergence of the civilized human diet, distal gut microbiome, and host immunity. PMID:26440374
Characterization of the Pseudomonas aeruginosa Glycoside Hydrolase PslG Reveals That Its Levels Are Critical for Psl Polysaccharide Biosynthesis and Biofilm Formation. PMID:26424791
Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. PMID:26414444
A catalog of the mouse gut metagenome. PMID:26414350
Advancing understanding of microbial bioenergy conversion processes by activity-based protein profiling. PMID:26413155
Uncommon Glycosidases for the Enzymatic Preparation of Glycosides. PMID:26404386
Glucuronoyl Esterase Screening and Characterization Assays Utilizing Commercially Available Benzyl Glucuronic Acid Ester. PMID:26404219
Probing the Functions of Carbohydrate Binding Modules in the CBEL Protein from the Oomycete Phytophthora parasitica. PMID:26390127
High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes. PMID:26380634
Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. PMID:26343383
Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood. PMID:26341198
Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes. PMID:26337239
RNA-Seq Analysis of the Expression of Genes Encoding Cell Wall Degrading Enzymes during Infection of Lupin (Lupinus angustifolius) by Phytophthora parasitica. PMID:26332397
Crystal Structure and Mutational Analysis of Isomalto-dextranase, a Member of Glycoside Hydrolase Family 27. PMID:26330557
Suberin Regulates the Production of Cellulolytic Enzymes in Streptomyces scabiei, the Causal Agent of Potato Common Scab. PMID:26330095
Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes. PMID:26328761
New Insights into the Role of T3 Loop in Determining Catalytic Efficiency of GH28 Endo-Polygalacturonases. PMID:26327390
Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage. PMID:26325358
Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides. PMID:26319874
Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. PMID:26317212
Structure of the Glycosyltransferase Ktr4p from Saccharomyces cerevisiae. PMID:26296208
The GH130 Family of Mannoside Phosphorylases Contains Glycoside Hydrolases That Target β-1,2-Mannosidic Linkages in Candida Mannan. PMID:26286752
Cold shock induction of recombinant Arctic environmental genes. PMID:26286037
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. PMID:26284514
The Immunoreactive Exo-1,3-β-Glucanase from the Pathogenic Oomycete Pythium insidiosum Is Temperature Regulated and Exhibits Glycoside Hydrolase Activity. PMID:26263509
Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization. PMID:26253670
Comparative genomics of pectinacetylesterases: Insight on function and biology. PMID:26237162
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. PMID:26236396
Genome wide comprehensive analysis and web resource development on cell wall degrading enzymes from phyto-parasitic nematodes. PMID:26232118
Description of a novel pectin-degrading bacterial species Prevotella pectinovora sp. nov., based on its phenotypic and genomic traits. PMID:26224452
MUCILAGE-RELATED10 Produces Galactoglucomannan That Maintains Pectin and Cellulose Architecture in Arabidopsis Seed Mucilage. PMID:26220953
Challenges and perspectives in combinatorial assembly of novel exopolysaccharide biosynthesis pathways. PMID:26217319
Recognition of xyloglucan by the crystalline cellulose-binding site of a family 3a carbohydrate-binding module. PMID:26193423
Functional Screening of Hydrolytic Activities Reveals an Extremely Thermostable Cellulase from a Deep-Sea Archaeon. PMID:26191525
Degradation of Granular Starch by the Bacterium Microbacterium aurum Strain B8.A Involves a Modular α-Amylase Enzyme System with FNIII and CBM25 Domains. PMID:26187958
Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. PMID:26175744
Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2. PMID:26160170
Structural Basis for the Interconversion of Maltodextrins by MalQ, the Amylomaltase of Escherichia coli. PMID:26139606
Substrate specificity and regioselectivity of fungal AA9 lytic polysaccharide monooxygenases secreted by Podospora anserina. PMID:26136828
Glucose-tolerant β-glucosidase retrieved from a Kusaya gravy metagenome. PMID:26136726
Glycan complexity dictates microbial resource allocation in the large intestine. PMID:26112186
Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance. PMID:26090679
First Glycoside Hydrolase Family 2 Enzymes from Thermus antranikianii and Thermus brockianus with β-Glucosidase Activity. PMID:26090361
Enzymatic Synthesis of Galactosylated Serine/Threonine Derivatives by β-Galactosidase from Escherichia coli. PMID:26084049
An integrated database of wood-formation related genes in plants. PMID:26078228
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. PMID:26076695
Structural bases for N-glycan processing by mannoside phosphorylase. PMID:26057673
Synergistic function of four novel thermostable glycoside hydrolases from a long-term enriched thermophilic methanogenic digester. PMID:26052323
Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes. PMID:26041776
Dissecting enzyme function with microfluidic-based deep mutational scanning. PMID:26040002
In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3). PMID:26039074
Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies. PMID:26029180
Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae. PMID:26023931
Alpha-L-fucosidase isoenzyme iso2 from Paenibacillus thiaminolyticus. PMID:26013545
Databases for Microbiologists. PMID:26013493
A cascade of arabinosyltransferases controls shoot meristem size in tomato. PMID:26005869
Exploring Multimodularity in Plant Cell Wall Deconstruction: STRUCTURAL AND FUNCTIONAL ANALYSIS OF Xyn10C CONTAINING THE CBM22-1-CBM22-2 TANDEM. PMID:26001782
A Versatile Family 3 Glycoside Hydrolase from Bifidobacterium adolescentis Hydrolyzes β-Glucosides of the Fusarium Mycotoxins Deoxynivalenol, Nivalenol, and HT-2 Toxin in Cereal Matrices. PMID:25979885
Anammox Planctomycetes have a peptidoglycan cell wall. PMID:25962786
Classification of fungal and bacterial lytic polysaccharide monooxygenases. PMID:25956378
Phylum level change in the cecal and fecal gut communities of rats fed diets containing different fermentable substrates supports a role for nitrogen as a factor contributing to community structure. PMID:25954902
Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests. PMID:25954263
Effect of mutations on the thermostability of Aspergillus aculeatus β-1,4-galactanase. PMID:25941560
Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation. PMID:25939779
Optimization of synergism of a recombinant auxiliary activity 9 from Chaetomium globosum with cellulase in cellulose hydrolysis. PMID:25936375
Chitinases Are Essential for Cell Separation in Ustilago maydis. PMID:25934689
The Structure of the T190M Mutant of Murine α-Dystroglycan at High Resolution: Insight into the Molecular Basis of a Primary Dystroglycanopathy. PMID:25932631
Structure of the K12 capsule containing 5,7-di-N-acetylacinetaminic acid from Acinetobacter baumannii isolate D36. PMID:25926563
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. PMID:25922666
Genome-wide gene expression dynamics of the fungal pathogen Dothistroma septosporum throughout its infection cycle of the gymnosperm host Pinus radiata. PMID:25919703
Comparative interactions of withanolides and sterols with two members of sterol glycosyltransferases from Withania somnifera. PMID:25888493
Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data. PMID:25871730
Complete Genome Sequence of Bifidobacterium scardovii Strain JCM 12489T, Isolated from Human Blood. PMID:25858848
Mucin glycan foraging in the human gut microbiome. PMID:25852737
Expression, purification, crystallization and preliminary crystallographic analysis of a GH20 β-N-acetylglucosaminidase from the marine bacterium Vibrio harveyi. PMID:25849504
Crystal structure of a novel two domain GH78 family α-rhamnosidase from Klebsiella oxytoca with rhamnose bound. PMID:25846411
Differential Metabolism of Exopolysaccharides from Probiotic Lactobacilli by the Human Gut Symbiont Bacteroides thetaiotaomicron. PMID:25841008
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. PMID:25833955
Key challenges for the creation and maintenance of specialist protein resources. PMID:25820941
The N-Terminal GH10 Domain of a Multimodular Protein from Caldicellulosiruptor bescii Is a Versatile Xylanase/β-Glucanase That Can Degrade Crystalline Cellulose. PMID:25819971
Determining the subcellular location of synthesis and assembly of the cell wall polysaccharide (1,3; 1,4)-β-D-glucan in grasses. PMID:25770111
Extracellular production of a novel endo-β-agarase AgaA from Pseudomonas vesicularis MA103 that cleaves agarose into neoagarotetraose and neoagarohexaose. PMID:25768342
High-resolution crystal structure of a polyextreme GH43 glycosidase from Halothermothrix orenii with α-L-arabinofuranosidase activity. PMID:25760712
Proteome exploration to provide a resource for the investigation of Ganoderma lucidum. PMID:25756518
Glycosyltransferase-mediated Sweet Modification in Oral Streptococci. PMID:25755271
Carboxyl-terminal truncations alter the activity of the human α-galactosidase A. PMID:25719393
Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. PMID:25716828
Family 46 Carbohydrate-binding Modules Contribute to the Enzymatic Hydrolysis of Xyloglucan and β-1,3-1,4-Glucans through Distinct Mechanisms. PMID:25713075
C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity. PMID:25710367
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. PMID:25683379
Characterization of a novel PQQ-dependent quinohemoprotein pyranose dehydrogenase from Coprinopsis cinerea classified into auxiliary activities family 12 in carbohydrate-active enzymes. PMID:25679509
Distribution and evolution of the lectin family in soybean (Glycine max). PMID:25679048
Structure of the GH76 α-mannanase homolog, BT2949, from the gut symbiont Bacteroides thetaiotaomicron. PMID:25664752
A new versatile microarray-based method for high throughput screening of carbohydrate-active enzymes. PMID:25657012
First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking. PMID:25650158
Exoproteome analysis of Clostridium cellulovorans in natural soft-biomass degradation. PMID:25642399
Positional preferences of acetyl esterases from different CE families towards acetylated 4-O-methyl glucuronic acid-substituted xylo-oligosaccharides. PMID:25642285
Structure and mechanism of Staphylococcus aureus TarM, the wall teichoic acid α-glycosyltransferase. PMID:25624472
Crystallization and preliminary crystallographic studies of a novel noncatalytic carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome. PMID:25615967
WallProtDB, a database resource for plant cell wall proteomics. PMID:25614757
Differential expression of α-L-arabinofuranosidases during maize (Zea mays L.) root elongation. PMID:25608890
Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase. PMID:25608804
Molecular diversity of LysM carbohydrate-binding motifs in fungi. PMID:25589417
Lack of a type-2 glycosyltransferase in the fish pathogen Flavobacterium psychrophilum determines pleiotropic changes and loss of virulence. PMID:25582708
Distinct roles for carbohydrate-binding modules of glycoside hydrolase 10 (GH10) and GH11 xylanases from Caldicellulosiruptor sp. strain F32 in thermostability and catalytic efficiency. PMID:25576604
Insights on the evolution of mycoparasitism from the genome of Clonostachys rosea. PMID:25575496
Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism. PMID:25567280
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer. PMID:25555398
PCR primers to study the diversity of expressed fungal genes encoding lignocellulolytic enzymes in soils using high-throughput sequencing. PMID:25545363
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease. PMID:25539722
Genomic potential for polysaccharide deconstruction in bacteria. PMID:25527556
Transcriptomic analysis of xylan utilization systems in Paenibacillus sp. strain JDR-2. PMID:25527555
Cellulolytic potential under environmental changes in microbial communities from grassland litter. PMID:25505459
Metatranscriptomic analyses of plant cell wall polysaccharide degradation by microorganisms in the cow rumen. PMID:25501482
Discovery of two β-1,2-mannoside phosphorylases showing different chain-length specificities from Thermoanaerobacter sp. X-514. PMID:25500577
Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom. PMID:25478683
Biochemical characterization of mutants in the active site residues of the β-galactosidase enzyme of Bacillus circulans ATCC 31382. PMID:25473598
AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. PMID:25468931
Structural advantage of sugar beet α-glucosidase to stabilize the Michaelis complex with long-chain substrate. PMID:25451917
Plant-polysaccharide-degrading enzymes from Basidiomycetes. PMID:25428937
Domain interactions control complex formation and polymerase specificity in the biosynthesis of the Escherichia coli O9a antigen. PMID:25422321
Plant Glycobiology-a diverse world of lectins, glycoproteins, glycolipids and glycans. PMID:25408698
Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass. PMID:25393313
Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk. PMID:25385629
Lactococcus lactis metabolism and gene expression during growth on plant tissues. PMID:25384484
Crossroads between Bacterial and Mammalian Glycosyltransferases. PMID:25368613
Dissection of hexosyl- and sialyltransferase domains in the bifunctional capsule polymerases from Neisseria meningitidis W and Y defines a new sialyltransferase family. PMID:25342753
The making of a sweet modification: structure and function of O-GlcNAc transferase. PMID:25336649
EzCatDB: the enzyme reaction database, 2015 update. PMID:25324316
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus Laetisaria arvalis involves successive secretion of oxidative and hydrolytic enzymes. PMID:25320637
Investigating the function of an arabinan utilization locus isolated from a termite gut community. PMID:25304507
Solution hybrid selection capture for the recovery of functional full-length eukaryotic cDNAs from complex environmental samples. PMID:25281543
Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness. PMID:25280501
A glycogene mutation map for discovery of diseases of glycosylation. PMID:25267602
Molecular mechanisms associated with xylan degradation by Xanthomonas plant pathogens. PMID:25266726
Molecular modeling and MM-PBSA free energy analysis of endo-1,4-β-xylanase from Ruminococcus albus 8. PMID:25264743
Advances in understanding glycosyltransferases from a structural perspective. PMID:25240227
Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family. PMID:25217478
A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PMID:25208077
Evidence for land plant cell wall biosynthetic mechanisms in charophyte green algae. PMID:25204387
Structural analysis of glucuronoxylan-specific Xyn30D and its attached CBM35 domain gives insights into the role of modularity in specificity. PMID:25202007
Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil. PMID:25197431
Structural analysis of the GH43 enzyme Xsa43E from Butyrivibrio proteoclasticus. PMID:25195890
Exploiting natural variation of secondary metabolism identifies a gene controlling the glycosylation diversity of dihydroxybenzoic acids in Arabidopsis thaliana. PMID:25173843
A complex gene locus enables xyloglucan utilization in the model saprophyte Cellvibrio japonicus. PMID:25171165
Extracellular secretion of noncatalytic plant cell wall-binding proteins by the cellulolytic thermophile Caldicellulosiruptor bescii. PMID:25157080
Phylogenomic analysis of glycogen branching and debranching enzymatic duo. PMID:25148856
Draft Genome Sequence of Falsirhodobacter sp. Strain alg1, an Alginate-Degrading Bacterium Isolated from Fermented Brown Algae. PMID:25146138
VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa. PMID:25144221
PlantCAZyme: a database for plant carbohydrate-active enzymes. PMID:25125445
Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae. PMID:25120558
Flexibility and mutagenic resiliency of glycosyltransferases. PMID:25117515
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. PMID:25108363
Genomic encyclopedia of type strains of the genus Bifidobacterium. PMID:25085493
Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase. PMID:25069018
Broad-range glycosidase activity profiling. PMID:25056938
Comparative secretome analysis of Streptomyces scabiei during growth in the presence or absence of potato suberin. PMID:25028574
Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities. PMID:25028422
The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes. PMID:25026064
Dissecting conformational contributions to glycosidase catalysis and inhibition. PMID:25016573
Crystallization and preliminary X-ray diffraction analysis of Xyn30D from Paenibacillus barcinonensis. PMID:25005099
Functional identification of a galactosyltransferase critical to Bacteroides fragilis Capsular Polysaccharide A biosynthesis. PMID:24997288
Fluorescent probes for exploring plant cell wall deconstruction: a review. PMID:24995923
Genomic insights into the fungal lignocellulolytic system of Myceliophthora thermophila. PMID:24995002
Modification and periplasmic translocation of the biofilm exopolysaccharide poly-β-1,6-N-acetyl-D-glucosamine. PMID:24994902
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species. PMID:24984952
Arabinogalactan proteins: focus on carbohydrate active enzymes. PMID:24966860
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. PMID:24958869
An Aspergillus nidulans β-mannanase with high transglycosylation capacity revealed through comparative studies within glycosidase family 5. PMID:24950755
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. PMID:24942338
Integration of bacterial lytic polysaccharide monooxygenases into designer cellulosomes promotes enhanced cellulose degradation. PMID:24927597
Overproduction, purification, crystallization and preliminary X-ray characterization of the family 46 carbohydrate-binding module (CBM46) of endo-β-1,4-glucanase B (CelB) from Bacillus halodurans. PMID:24915086
Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose. PMID:24907337
Substrate dependent in vitro antifungal activity of Bacillus sp strain AR2. PMID:24885467
Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae. PMID:24842809
The carbohydrate-binding domain of overexpressed STBD1 is important for its stability and protein-protein interactions. PMID:24837458
Specificity of O-glycosylation in enhancing the stability and cellulose binding affinity of Family 1 carbohydrate-binding modules. PMID:24821760
Crystallization and preliminary X-ray crystallographic analysis of a novel α-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405. PMID:24817722
Sets of covariant residues modulate the activity and thermal stability of GH1 β-glucosidases. PMID:24804841
O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. PMID:24797265
Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex. PMID:24713045
Synthesis of novel bioactive lactose-derived oligosaccharides by microbial glycoside hydrolases. PMID:24690139
Structural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds α-maltose 1-phosphate and forms a maltosyl-enzyme intermediate. PMID:24689960
Identification and functional characterization of a highly divergent N-acetylglucosaminyltransferase I (TbGnTI) in Trypanosoma brucei. PMID:24550396
In vitro assembly of the outer core of the lipopolysaccharide from Escherichia coli K-12 and Salmonella typhimurium. PMID:24479701
Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose. PMID:24441164
Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader. PMID:24428220
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. PMID:24316579
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics PubMed citations: 1925.

1925 articles citing: The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

Complete genome sequencing and investigation on the fiber-degrading potential of Bacillus amyloliquefaciens strain TL106 from the tibetan pig. PMID:35906551
BcMettl4-Mediated DNA Adenine N6-Methylation Is Critical for Virulence of Botrytis cinerea. PMID:35847085
Improvement in the Thermostability of a Recombinant β-Glucosidase Immobilized in Zeolite under Different Conditions. PMID:35807351
The evolutionary origin of host association in the Rickettsiales. PMID:35798888
Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids. PMID:35790765
Genome sequence and pathogenicity of Vibrio vulnificus strain MCCC 1A08743 isolated from contaminated prawns. PMID:35766638
Enhanced extracellular raw starch-degrading α-amylase production in Bacillus subtilis by promoter engineering and translation initiation efficiency optimization. PMID:35761342
Comparative Analysis of Microbiome Metagenomics in Reintroduced Wild Horses and Resident Asiatic Wild Asses in the Gobi Desert Steppe. PMID:35744684
Novel Glycosylation by Amylosucrase to Produce Glycoside Anomers. PMID:35741343
Identification of Pathogenicity-Related Effector Proteins and the Role of Piwsc1 in the Virulence of Penicillium italicum on Citrus Fruits. PMID:35736129
Complete Genome Sequence of Alkalihalobacillus sp. Strain LMS39, a Haloalkaliphilic Bacterium Isolated from a Hypersaline Lake. PMID:35736030
Experimental and computational studies of cellulases as bioethanol enzymes. PMID:35730402
Detection of peptidoglycan in yeast as a marker for the presence or abundance of intracellular Helicobacter pylori and Staphylococcus. PMID:35726098
Infection with a human-derived enteroinvasive Escherichia coli strain altered intestinal barrier function in guinea pigs. PMID:35725861
Species-Specific Gene Expansion of the Cellulose synthase Gene Superfamily in the Orchidaceae Family and Functional Divergence of Mannan Synthesis-Related Genes in Dendrobium officinale. PMID:35720557
Cellulase activity of a novel bacterial strain Arthrobacter woluwensis TDS9: its application on bioconversion of paper mill sludge. PMID:35708781
Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants. PMID:35695455
Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose Degradation and Terpenoid Synthesis. PMID:35685935
Lessons From Insect Fungiculture: From Microbial Ecology to Plastics Degradation. PMID:35685924
Comparative genomics reveals low levels of inter- and intraspecies diversity in the causal agents of dwarf and common bunt of wheat and hint at conspecificity of Tilletia caries and T. laevis. PMID:35672841
Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets. PMID:35650642
Engineering a carbohydrate-binding module to increase the expression level of glucoamylase in Pichia pastoris. PMID:35643500
Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes. PMID:35643079
Prebiotics and the Human Gut Microbiota: From Breakdown Mechanisms to the Impact on Metabolic Health. PMID:35631237
Identification of a New Endo-β-1,4-xylanase Prospected from the Microbiota of the Termite Heterotermes tenuis. PMID:35630351
Metagenomics Reveals the Diversity and Taxonomy of Carbohydrate-Active Enzymes and Antibiotic Resistance Genes in Suancai Bacterial Communities. PMID:35627157
A novel low temperature active maltooligosaccharides-forming amylase from Bacillus koreensis HL12 as biocatalyst for maltooligosaccharide production. PMID:35615748
Metagenomic mining of Indian river confluence reveal functional microbial community with lignocelluloytic potential. PMID:35611093
Complete genome sequence of Pseudomonas stutzeri S116 owning bifunctional catalysis provides insights into affecting performance of microbial fuel cells. PMID:35590268
Genome mining reveals polysaccharide-degrading potential and new antimicrobial gene clusters of novel intestinal bacterium Paenibacillus jilinensis sp. nov. PMID:35590262
Oceanisphaera pacifica sp. nov., isolated from the intestine of Trichiurus japonicus. PMID:35590019
Characterizing the mucin-degrading capacity of the human gut microbiota. PMID:35589783
Emerging Roles of β-Glucanases in Plant Development and Adaptative Responses. PMID:35567119
A myxobacterial GH19 lysozyme with bacteriolytic activity on both Gram-positive and negative phytopathogens. PMID:35551524
Large differences in carbohydrate degradation and transport potential among lichen fungal symbionts. PMID:35551185
Comparative Genomics Revealed Wide Intra-Species Genetic Heterogeneity and Lineage-Specific Genes of Akkermansia muciniphila. PMID:35536024
Comparative analysis of genome-based CAZyme cassette in Antarctic Microbacterium sp. PAMC28756 with 31 other Microbacterium species. PMID:35486322
Study on the Biochemical Characterization and Selectivity of Three β-Glucosidases From Bifidobacterium adolescentis ATCC15703. PMID:35464910
Comparative Genomics Assisted Functional Characterization of Rahnella aceris ZF458 as a Novel Plant Growth Promoting Rhizobacterium. PMID:35444623
Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential. PMID:35430593
Administration of Aspergillus oryzae suppresses DSS-induced colitis. PMID:35415669
Generation of a Library of Carbohydrate-Active Enzymes for Plant Biomass Deconstruction. PMID:35409382
A Case Study of the Glycoside Hydrolase Enzyme Mechanism Using an Automated QM-Cluster Model Building Toolkit. PMID:35402371
Effects of Short-Chain Fatty Acid Modulation on Potentially Diarrhea-Causing Pathogens in Yaks Through Metagenomic Sequencing. PMID:35402298
The barrier and beyond: Roles of intestinal mucus and mucin-type O-glycosylation in resistance and tolerance defense strategies guiding host-microbe symbiosis. PMID:35380912
Comparative Analysis of the Gut Microbiota of Mongolian Gazelle (Procapra gutturosa) Under Fragmented Habitats. PMID:35369477
Formation of recombinant bifunctional fusion protein: A newer approach to combine the activities of two enzymes in a single protein. PMID:35363796
Heat Shock Response of the Active Microbiome From Perennial Cave Ice. PMID:35360653
Role for a Lytic Polysaccharide Monooxygenase in Cell Wall Remodeling in Streptomyces coelicolor. PMID:35357207
Structure, substrate recognition and initiation of hyaluronan synthase. PMID:35355017
A paradigm shift towards production of sustainable bioenergy and advanced products from Cannabis/hemp biomass in Canada. PMID:35342682
The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae. PMID:35330257
A Novel Alginate Lyase: Identification, Characterization, and Potential Application in Alginate Trisaccharide Preparation. PMID:35323458
Metagenomic mining and structure-function studies of a hyper-thermostable cellobiohydrolase from hot spring sediment. PMID:35318423
Penicillium Ochrochloron RLS11 Secretome Containing Carbohydrate-Active Enzymes Improves Commercial Enzyme Mixtures During Sugarcane Straw Saccharification. PMID:35312974
Identification of key microorganisms in facultative stabilization ponds from dairy industries, using metagenomics. PMID:35310160
Structure and Function Insight of the α-Glucosidase QsGH13 From Qipengyuania seohaensis sp. SW-135. PMID:35308395
In silico evaluation of a targeted metaproteomics strategy for broad screening of cellulolytic enzyme capacities in anaerobic microbiome bioreactors. PMID:35303956
Shotgun Metagenomics of Deep Forest Soil Layers Show Evidence of Altered Microbial Genetic Potential for Biogeochemical Cycling. PMID:35300488
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Black fungi and ants: a genomic comparison of species inhabiting carton nests versus domatia. PMID:35256015
Metagenome-Assembled Genomes Reveal Mechanisms of Carbohydrate and Nitrogen Metabolism of Schistosomiasis-Transmitting Vector Biomphalaria Glabrata. PMID:35254167
Genome and Comparative Transcriptome Dissection Provide Insights Into Molecular Mechanisms of Sclerotium Formation in Culinary-Medicinal Mushroom Pleurotus tuber-regium. PMID:35250915
Co-elicitation of lignocelluloytic enzymatic activities and metabolites production in an Aspergillus-Streptomyces co-culture during lignocellulose fractionation. PMID:35243445
Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE. PMID:35241669
Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria. PMID:35240043
Suppressive Effect of Bioactive Extracts of Bacillus sp. H8-1 and Bacillus sp. K203 on Tomato Wilt Caused by Clavibacter michiganensis subsp. michiganensis. PMID:35208859
Hybrid Assembly Improves Genome Quality and Completeness of Trametes villosa CCMB561 and Reveals a Huge Potential for Lignocellulose Breakdown. PMID:35205897
Unraveling the Genome Sequence of Plant Growth Promoting Aspergillus niger (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics. PMID:35205861
Whole Genome Sequence of an Edible Mushroom Stropharia rugosoannulata (Daqiugaigu). PMID:35205854
Enzymatic activity of glycosyltransferase GLT8D1 promotes human glioblastoma cell migration. PMID:35198895
Cultivating Lentinula edodes on Substrate Containing Composted Sawdust Affects the Expression of Carbohydrate and Aromatic Amino Acid Metabolism-Related Genes. PMID:35191774
An estimate of the deepest branches of the tree of life from ancient vertically evolving genes. PMID:35190025
Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake. PMID:35166931
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria. PMID:35166563
Critical Determinants in ER-Golgi Trafficking of Enzymes Involved in Glycosylation. PMID:35161411
Enzymatic Preparation of Gentiooligosaccharides by a Thermophilic and Thermostable β-Glucosidase at a High Substrate Concentration. PMID:35159507
Genome-Wide Identification of the PMEI Gene Family in Tea Plant and Functional Analysis of CsPMEI2 and CsPMEI4 Through Ectopic Overexpression. PMID:35154201
The microbiome of the buffalo digestive tract. PMID:35145088
Genome Sequencing of Hericium coralloides by a Combination of PacBio RS II and Next-Generation Sequencing Platforms. PMID:35141329
Functional convergence of Yunnan snub-nosed monkey and bamboo-eating panda gut microbiomes revealing the driving by dietary flexibility on mammal gut microbiome. PMID:35140888
Carbohydrate active enzymes (CAZy) regulate cellulolytic and pectinolytic enzymes in Colletotrichum falcatum causing red rot in sugarcane. PMID:35127303
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort. PMID:35115689
Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects. PMID:35107331
Assembly of 97 Novel Bacterial Genomes in the Microbial Community Affiliated with Polyvinyl Alcohol in Soil of Northern China. PMID:35087906
Crab-Eating Monkey Acidic Chitinase (CHIA) Efficiently Degrades Chitin and Chitosan under Acidic and High-Temperature Conditions. PMID:35056724
Characterizing the Alteration in Rumen Microbiome and Carbohydrate-Active Enzymes Profile with Forage of Muskoxen Rumen through Comparative Metatranscriptomics. PMID:35056520
Identification of an Amylomaltase from the Halophilic Archaeon Haloquadratum walsbyi by Functional Metagenomics: Structural and Functional Insights. PMID:35054477
Exopolysaccharides Produced by Lactic Acid Bacteria: From Biosynthesis to Health-Promoting Properties. PMID:35053888
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. PMID:35013291
Improving the Thermostability of a Fungal GH11 Xylanase via Fusion of a Submodule (C2) from Hyperthermophilic CBM9_1-2. PMID:35008888
Changpingibacter yushuensis gen. nov., sp. nov., isolated from fluvial sediment in Qinghai Tibet Plateau of China. PMID:34994958
Comparative Analysis of Sugar Metabolites and Their Transporters in Sugarcane Following Sugarcane mosaic virus (SCMV) Infection. PMID:34948367
Genomic and Metabolic Features of an Unexpectedly Predominant, Thermophilic, Assistant Starter Microorganism, Thermus thermophilus, in Chinese Inner Mongolian Cheese. PMID:34945513
Functional Genomics and Comparative Lineage-Specific Region Analyses Reveal Novel Insights into Race Divergence in Verticillium dahliae. PMID:34937170
Select Streptococci Can Degrade Candida Mannan To Facilitate Growth. PMID:34936835
Streptozotocin-induced hyperglycemia alters the cecal metabolome and exacerbates antibiotic-induced dysbiosis. PMID:34910917
Genetic determinants of endophytism in the Arabidopsis root mycobiome. PMID:34893598
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. PMID:34893091
Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production. PMID:34874506
The WalR-WalK Signaling Pathway Modulates the Activities of both CwlO and LytE through Control of the Peptidoglycan Deacetylase PdaC in Bacillus subtilis. PMID:34871030
Genome In Silico and In Vitro Analysis of the Probiotic Properties of a Bacterial Endophyte, Bacillus Paranthracis Strain MHSD3. PMID:34858466
Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. PMID:34849197
A rice gene encoding glycosyl hydrolase plays contrasting roles in immunity depending on the type of pathogens. PMID:34839574
A Low to Medium-Shear Extruded Kibble with Greater Resistant Starch Increased Fecal Oligosaccharides, Butyric Acid, and Other Saccharolytic Fermentation By-Products in Dogs. PMID:34835419
Novel Nematode-Killing Protein-1 (Nkp-1) from a Marine Epiphytic Bacterium Pseudoalteromonas tunicata. PMID:34829814
Improving Aqueous Solubility of Natural Antioxidant Mangiferin through Glycosylation by Maltogenic Amylase from Parageobacillus galactosidasius DSM 18751. PMID:34829688
The Genomic and Transcriptomic Analyses of Floccularia luteovirens, a Rare Edible Fungus in the Qinghai-Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation. PMID:34829176
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions. PMID:34827630
RadA, a MSCRAMM Adhesin of the Dominant Symbiote Ruminococcus gnavus E1, Binds Human Immunoglobulins and Intestinal Mucins. PMID:34827611
Glycoside Hydrolases and Glycosyltransferases from Hyperthermophilic Archaea: Insights on Their Characteristics and Applications in Biotechnology. PMID:34827555
Hybrid de novo genome-reassembly reveals new insights on pathways and pathogenicity determinants in rice blast pathogen Magnaporthe oryzae RMg_Dl. PMID:34824307
Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome. PMID:34814938
Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme. PMID:34791213
Trends in biological data integration for the selection of enzymes and transcription factors related to cellulose and hemicellulose degradation in fungi. PMID:34777932
Current Approaches in Supersecondary Structures Investigation. PMID:34769310
Deep transcriptomic study reveals the role of cell wall biosynthesis and organization networks in the developing shell of peanut pod. PMID:34732143
The chitinolytic activity of the Curtobacterium sp. isolated from field-grown soybean and analysis of its genome sequence. PMID:34731210
DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes. PMID:34724822
The microbiome of a shell mound: ancient anthropogenic waste as a source of Streptomyces degrading recalcitrant polysaccharides. PMID:34719741
FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes. PMID:34690938
Genomic Studies of White-Rot Fungus Cerrena unicolor SP02 Provide Insights into Food Safety Value-Added Utilization of Non-Food Lignocellulosic Biomass. PMID:34682256
Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated Akkermansia Is Strain Dependent. PMID:34669436
Functional glyco-metagenomics elucidates the role of glycan-related genes in environments. PMID:34663219
Metagenomic Analysis Identifies Sex-Related Cecal Microbial Gene Functions and Bacterial Taxa in the Quail. PMID:34660751
Structural and Catalytic Characterization of TsBGL, a β-Glucosidase From Thermofilum sp. ex4484_79. PMID:34659150
Chitinase Chit62J4 Essential for Chitin Processing by Human Microbiome Bacterium Clostridium paraputrificum J4. PMID:34641521
Comparative transcriptomic analysis of races 1, 2, 5 and 6 of Fusarium oxysporum f.sp. pisi in a susceptible pea host identifies differential pathogenicity profiles. PMID:34627148
Distribution of bacteriocin genes in the lineages of Lactiplantibacillus plantarum. PMID:34625657
Genome of Ganoderma Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for Ganoderma tsugae. PMID:34603250
ProTG4: A Web Server to Approximate the Sequence of a Generic Protein From an in Silico Library of Translatable G-Quadruplex (TG4)-Mapped Peptides. PMID:34602814
Whole-genome assembly of Ganoderma leucocontextum (Ganodermataceae, Fungi) discovered from the Tibetan Plateau of China. PMID:34586388
Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2. PMID:34576026
Glycosylation of Ganoderic Acid G by Bacillus Glycosyltransferases. PMID:34575908
Fungal Cell Wall Proteins and Signaling Pathways Form a Cytoprotective Network to Combat Stresses. PMID:34575777
The first complete genome sequence of species Shewanella decolorationis, from a bioremediation competent strain Ni1-3. PMID:34568919
Genome sequencing and identification of cellulase genes in Bacillus paralicheniformis strains from the Red Sea. PMID:34548024
CBM20CP, a novel functional protein of starch metabolism in green algae. PMID:34546521
Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil. PMID:34529164
Whole conversion of agro-industrial wastes rich in galactose-based carbohydrates into lipid using oleaginous yeast Aureobasidium namibiae. PMID:34526122
The Role of Glycoside Hydrolases in Phytopathogenic Fungi and Oomycetes Virulence. PMID:34502268
Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. PMID:34472169
Nesterenkonia ebinurensis sp. nov., a Novel Actinobacterium Isolated From Populus euphratica. PMID:34468853
Tools for functional dissection of site-specific O-GlcNAcylation. PMID:34458751
Temporal and nutritional effects on the weaner pig ileal microbiota. PMID:34454628
Functional validation of pathogenicity genes in rice sheath blight pathogen Rhizoctonia solani by a novel host-induced gene silencing system. PMID:34453407
Computational models in the service of X-ray and cryo-electron microscopy structure determination. PMID:34449113
Insights into the Host Specificity of a New Oomycete Root Pathogen, Pythium brassicum P1: Whole Genome Sequencing and Comparative Analysis Reveals Contracted Regulation of Metabolism, Protein Families, and Distinct Pathogenicity Repertoire. PMID:34445718
Genomic and Experimental Investigations of Auriscalpium and Strobilurus Fungi Reveal New Insights into Pinecone Decomposition. PMID:34436218
Secretory Expression of an Alkaline Alginate Lyase With Heat Recovery Property in Yarrowia lipolytica. PMID:34434178
Investigation of cell wall proteins of C. sinensis leaves by combining cell wall proteomics and N-glycoproteomics. PMID:34416854
Sphingobacterium prati sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction. PMID:34406922
CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars. PMID:34384463
Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes. PMID:34370660
Analyses of Virulence Genes of Clavibacter michiganensis subsp. michiganensis Strains Reveal Heterogeneity and Deletions That Correlate with Pathogenicity. PMID:34361965
Comparative Transcriptome and Endophytic Bacterial Community Analysis of Morchella conica SH. PMID:34354681
Xylanase from Marine Filamentous Fungus Pestalotiopsis sp. AN-7 Was Activated with Diluted Salt Solution Like Brackish Water. PMID:34354541
Microbial α-L-Rhamnosidases of Glycosyl Hydrolase Families GH78 and GH106 Have Broad Substrate Specificities toward α-L-Rhamnosyl- and α-L-Mannosyl-Linkages. PMID:34354534
Purification, Cloning, Functional Expression, Structure, and Characterization of a Thermostable β-Mannanase from Talaromyces trachyspermus B168 and Its Efficiency in Production of Mannooligosaccharides from Coffee Wastes. PMID:34354508
Enhanced Azidolysis by the Formation of Stable Ser-His Catalytic Dyad in a Glycoside Hydrolase Family 10 Xylanase Mutant. PMID:34354506
Genomic Analysis of the Mycoparasite Pestalotiopsis sp. PG52. PMID:34349810
Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle. PMID:34348764
Massilia cellulosiltytica sp. nov., a novel cellulose-degrading bacterium isolated from rhizosphere soil of rice (Oryza sativa L.) and its whole genome analysis. PMID:34324104
A cell engineering approach to enzyme-based fed-batch fermentation. PMID:34303374
Bioinformatics analysis of PAE family in Populus trichocarpa and responsiveness to carbon and nitrogen treatment. PMID:34295610
Crystal structure and functional characterization of an oligosaccharide dehydrogenase from Pycnoporus cinnabarinus provides insights into fungal breakdown of lignocellulose. PMID:34294139
Diversity and function of culturable actinobacteria in the root-associated of Salvia miltiorrhiza Bunge. PMID:34285837
Comparative Genomics of Exiguobacterium Reveals What Makes a Cosmopolitan Bacterium. PMID:34282940
Whole-Genome Sequence Data Analysis of Anoxybacillus kamchatkensis NASTPD13 Isolated from Hot Spring of Myagdi, Nepal. PMID:34258259
Exiguobacterium algae sp. nov. and Exiguobacterium qingdaonense sp. nov., two novel moderately halotolerant bacteria isolated from the coastal algae. PMID:34251527
Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata. PMID:34243707
Analysis and application of a suite of recombinant endo-β(1,3)-D-glucanases for studying fungal cell walls. PMID:34217291
Dynamics of Verticillium dahliae race 1 population under managed agricultural ecosystems. PMID:34172070
Degradation and Utilization of Alginate by Marine Pseudoalteromonas: a Review. PMID:34160244
Pan-Genome Analysis of Vibrio cholerae and Vibrio metschnikovii Strains Isolated From Migratory Birds at Dali Nouer Lake in Chifeng, China. PMID:34136552
Characterization of an α-Glucosidase Enzyme Conserved in Gardnerella spp. Isolated from the Human Vaginal Microbiome. PMID:34124938
Glycoside hydrolase stabilization of transition state charge: new directions for inhibitor design. PMID:34094307
Recovery of human gut microbiota genomes with third-generation sequencing. PMID:34078878
Metatranscriptomic Analysis Reveals an Imbalance of Hepatopancreatic Flora of Chinese Mitten Crab Eriocheir sinensis with Hepatopancreatic Necrosis Disease. PMID:34071147
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits. PMID:34067621
Unraveling a Lignocellulose-Decomposing Bacterial Consortium from Soil Associated with Dry Sugarcane Straw by Genomic-Centered Metagenomics. PMID:34063014
Identification and functional analysis of a galactosyltransferase capable of cholesterol glycolipid formation in the Lyme disease spirochete Borrelia burgdorferi. PMID:34061884
Enzymatic characterization of a novel recombinant 1,3-α-3,6-anhydro-L-galactosidase specific for neoagarobiose hydrolysis into monosaccharides. PMID:34057561
Two β-glucuronosyltransferases involved in the biosynthesis of type II arabinogalactans function in mucilage polysaccharide matrix organization in Arabidopsis thaliana. PMID:34051740
Significantly improving the thermostability of a hyperthermophilic GH10 family xylanase XynAF1 by semi-rational design. PMID:34014347
Gut microbiome contributions to altered metabolism in a pig model of undernutrition. PMID:34001614
Comparative genomics analysis of Pediococcus acidilactici species. PMID:33990913
Microbial iron and carbon metabolism as revealed by taxonomy-specific functional diversity in the Southern Ocean. PMID:33941887
Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. PMID:33902447
Characterization of Glycoside Hydrolase Families 13 and 31 Reveals Expansion and Diversification of α-Amylase Genes in the Phlebotomine Lutzomyia longipalpis and Modulation of Sandfly Glycosidase Activities by Leishmania Infection. PMID:33897451
Penicillium oxalicum secretomic analysis identify plant cell wall degrading enzymes important for fruit juice extraction. PMID:33897014
Complete genome sequence of the Clostridium difficile LCL126. PMID:33896381
Marine Polysaccharides: Occurrence, Enzymatic Degradation and Utilization. PMID:33890358
Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps). PMID:33848236
Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes. PMID:33827423
Phylogenomics of Plant-Associated Botryosphaeriaceae Species. PMID:33815343
Hyposialylation Must Be Considered to Develop Future Therapies in Autoimmune Diseases. PMID:33810246
Evolution of Fungal Carbohydrate-Active Enzyme Portfolios and Adaptation to Plant Cell-Wall Polymers. PMID:33807546
Metagenomic Insight: Dietary Thiamine Supplementation Promoted the Growth of Carbohydrate-Associated Microorganisms and Enzymes in the Rumen of Saanen Goats Fed High-Concentrate Diets. PMID:33803603
PUL-Mediated Plant Cell Wall Polysaccharide Utilization in the Gut Bacteroidetes. PMID:33802923
Expression and Characterization of a Cold-Adapted Alginate Lyase with Exo/Endo-Type Activity from a Novel Marine Bacterium Alteromonas portus HB161718T. PMID:33802659
Agromyces laixinhei sp. nov. isolated from bat feces in China. PMID:33779960
Additional description and genome analyses of Caenorhabditis auriculariae representing the basal lineage of genus Caenorhabditis. PMID:33762598
Microbial Ecological Mechanism for Long-Term Production of High Concentrations of n-Caproate via Lactate-Driven Chain Elongation. PMID:33741616
Bagasse minority pathway expression: Real time study of GH2 β-mannosidases from bacteroidetes. PMID:33730062
Aspects and Recent Trends in Microbial α-Amylase: a Review. PMID:33715051
The Nutritional Significance of Intestinal Fungi: Alteration of Dietary Carbohydrate Composition Triggers Colonic Fungal Community Shifts in a Pig Model. PMID:33712429
Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genes. PMID:33706718
Structure and dynamics analysis of multi-domain putative β-1,4-glucosidase of family 3 glycoside hydrolase (PsGH3) from Pseudopedobacter saltans. PMID:33694107
Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil. PMID:33687503
Polysaccharide Biosynthesis: Glycosyltransferases and Their Complexes. PMID:33679837
Comparative Genomics: Insights on the Pathogenicity and Lifestyle of Rhizoctonia solani. PMID:33671736
Host Cell Wall Damage during Pathogen Infection: Mechanisms of Perception and Role in Plant-Pathogen Interactions. PMID:33669710
A polysaccharide utilization locus from the gut bacterium Dysgonomonas mossii encodes functionally distinct carbohydrate esterases. PMID:33667545
Disaccharide phosphorylases: Structure, catalytic mechanisms and directed evolution. PMID:33665389
Complete Genome Sequence Analysis of Brevibacillus laterosporus Bl-zj Reflects its Potential Algicidal Response. PMID:33649996
Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. PMID:33649555
Structural insights into homotrimeric assembly of cellulose synthase CesA7 from Gossypium hirsutum. PMID:33638282
Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9. PMID:33585864
High Quality Aspergillus aculeatus Genomes and Transcriptomes: A Platform for Cellulase Activity Optimization Toward Industrial Applications. PMID:33585410
Molecular insight into regioselectivity of transfructosylation catalyzed by GH68 levansucrase and β-fructofuranosidase. PMID:33571525
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida). PMID:33570560
Research progress and the biotechnological applications of multienzyme complex. PMID:33564922
Oceanomicrobium pacificus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from seawater of tropical western Pacific. PMID:33548023
Functional characterization of thermotolerant microbial consortium for lignocellulolytic enzymes with central role of Firmicutes in rice straw depolymerization. PMID:33542396
NMR Structure Determinations of Small Proteins Using only One Fractionally 20% 13C- and Uniformly 100% 15N-Labeled Sample. PMID:33535444
Mutation of UDP-glucose binding motif residues lead to increased affinity for ADP-glucose in sugarcane sucrose phosphate synthase. PMID:33528727
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. PMID:33526884
Biocontrol Using Bacillus amyloliquefaciens PP19 Against Litchi Downy Blight Caused by Peronophythora litchii. PMID:33510732
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai. PMID:33489942
Insect derived extra oral GH32 plays a role in susceptibility of wheat to Hessian fly. PMID:33483565
Metagenomic analysis of the cow, sheep, reindeer and red deer rumen. PMID:33479378
A genomic view of the microbiome of coral reef demosponges. PMID:33469166
Complete genome sequencing and comparative CAZyme analysis of Rhodococcus sp. PAMC28705 and PAMC28707 provide insight into their biotechnological and phytopathogenic potential. PMID:33459813
Functional screening of a Caatinga goat (Capra hircus) rumen metagenomic library reveals a novel GH3 β-xylosidase. PMID:33449963
XXYLT1 methylation contributes to the occurrence of lung adenocarcinoma: Methylation and lung adenocarcinoma. PMID:33429795
First Genome of Labyrinthula sp., an Opportunistic Seagrass Pathogen, Reveals Novel Insight into Marine Protist Phylogeny, Ecology and CAZyme Cell-Wall Degradation. PMID:33410934
Diversity and Genomic Characterization of a Novel Parvarchaeota Family in Acid Mine Drainage Sediments. PMID:33408709
Bioprospecting of microbial strains for biofuel production: metabolic engineering, applications, and challenges. PMID:33407786
Competitive Exclusion and Metabolic Dependency among Microorganisms Structure the Cellulose Economy of an Agricultural Soil. PMID:33402535
Genome sequencing and functional annotation of Bacillus sp. strain BS-Z15 isolated from cotton rhizosphere soil having antagonistic activity against Verticillium dahliae. PMID:33399892
Genomic Insight into Pediococcus acidilactici HN9, a Potential Probiotic Strain Isolated from the Traditional Thai-Style Fermented Beef Nhang. PMID:33375492
Comparative Analysis of Carbohydrate Active Enzymes in the Flammulina velutipes var. lupinicola Genome. PMID:33374587
Gut Microbiota in Dholes During Estrus. PMID:33329438
Systematic Analysis and Functional Validation of Citrus Pectin Acetylesterases (CsPAEs) Reveals that CsPAE2 Negatively Regulates Citrus Bacterial Canker Development. PMID:33322321
Fructan-sensitive children with irritable bowel syndrome have distinct gut microbiome signatures. PMID:33314183
Agricultural Soil Management Practices Differentially Shape the Bacterial and Fungal Microbiome of Sorghum bicolor. PMID:33310712
Accelerated production of α2,8- and α2,9-linked polysialic acid in recombinant Escherichia coli using high cell density cultivation. PMID:33304838
Artificial consortium demonstrates emergent properties of enhanced cellulosic-sugar degradation and biofuel synthesis. PMID:33268782
Cellulosomes: Highly Efficient Cellulolytic Complexes. PMID:33252735
Effects of Excess Manganese on the Xylem Sap Protein Profile of Tomato (Solanum lycopersicum) as Revealed by Shotgun Proteomic Analysis. PMID:33238539
Comparison of human poly-N-acetyl-lactosamine synthase structure with GT-A fold glycosyltransferases supports a modular assembly of catalytic subsites. PMID:33229435
Characterization and Application of a Recombinant Exolytic GH50A β-Agarase from Cellvibrio sp. KY-GH-1 for Enzymatic Production of Neoagarobiose from Agarose. PMID:33225177
Quantitative comparison of the biomass-degrading enzyme repertoires of five filamentous fungi. PMID:33219291
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing. PMID:33205903
Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function. PMID:33193243
Can You Trust Your Gut? Implicating a Disrupted Intestinal Microbiome in the Progression of NAFLD/NASH. PMID:33193105
Metabolic Glycan Labeling-Based Screen to Identify Bacterial Glycosylation Genes. PMID:33186014
Metagenomic assessment of the global diversity and distribution of bacteria and fungi. PMID:33185929
Mucin-Degrading Microbes Release Monosaccharides That Chemoattract Clostridioides difficile and Facilitate Colonization of the Human Intestinal Mucus Layer. PMID:33176423
Heterozygous, Polyploid, Giant Bacterium, Achromatium, Possesses an Identical Functional Inventory Worldwide across Drastically Different Ecosystems. PMID:33169788
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. PMID:33150080
Characterization of a Robust and pH-Stable Tannase from Mangrove-Derived Yeast Rhodosporidium diobovatum Q95. PMID:33143376
Transcriptome Profiling-Based Analysis of Carbohydrate-Active Enzymes in Aspergillus terreus Involved in Plant Biomass Degradation. PMID:33123513
Fragment-derived modulators of an industrial β-glucosidase. PMID:33111951
Comparative proteomic analysis of Rhizopus oryzae hyphae displaying filamentous and pellet morphology. PMID:33088665
Purification and biochemical characterization of an extracellular fructosyltransferase enzyme from Aspergillus niger sp. XOBP48: implication in fructooligosaccharide production. PMID:33088656
Understanding High-Salt and Cold Adaptation of a Polyextremophilic Enzyme. PMID:33081237
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
A novel high performance in-silico screened metagenome-derived alkali-thermostable endo-β-1,4-glucanase for lignocellulosic biomass hydrolysis in the harsh conditions. PMID:33076889
Pectin Synthesis and Pollen Tube Growth in Arabidopsis Involves Three GAUT1 Golgi-Anchoring Proteins: GAUT5, GAUT6, and GAUT7. PMID:33072156
Aspergillus sydowii: Genome Analysis and Characterization of Two Heterologous Expressed, Non-redundant Xylanases. PMID:33071998
Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis. PMID:33069230
A Need for Improved Cellulase Identification from Metagenomic Sequence Data. PMID:33067195
Genome Sequencing of Paecilomyces Penicillatus Provides Insights into Its Phylogenetic Placement and Mycoparasitism Mechanisms on Morel Mushrooms. PMID:33065983
Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis. PMID:33064719
Expression Profiling of Plant Cell Wall-Degrading Enzyme Genes in Eucryptorrhynchus scrobiculatus Midgut. PMID:33013475
Glucosylation prevents plant defense activation in phloem-feeding insects. PMID:32989301
Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage. PMID:32986754
Cryo-EM structure of fission yeast tetrameric α-mannosidase Ams1. PMID:32981237
The Biocontrol Root-Oomycete, Pythium Oligandrum, Triggers Grapevine Resistance and Shifts in the Transcriptome of the Trunk Pathogenic Fungus, Phaeomoniella Chlamydospora. PMID:32961710
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor. PMID:32937869
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. PMID:32929206
Trehalose Degradation by Cellvibrio japonicus Exhibits No Functional Redundancy and Is Solely Dependent on the Tre37A Enzyme. PMID:32917758
Biomass-degrading glycoside hydrolases of archaeal origin. PMID:32905355
Streptomyces sp. S501, a Marine Petroleum-Degrading Actinobacterium Isolated from Sediment of Yalujiang Estuary, Northern China, and Its Genome Annotation. PMID:32895802
Soluble and Cross-Linked Aggregated Forms of α-Galactosidase from Vigna mungo Immobilized on Magnetic Nanocomposites: Improved Stability and Reusability. PMID:32894388
The structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47. PMID:32880590
Aerobic Metabolism in Vibrio cholerae Is Required for Population Expansion during Infection. PMID:32873763
Genomics and Virulence of Fonsecaea pugnacius, Agent of Disseminated Chromoblastomycosis. PMID:32849816
A Global Survey of Carbohydrate Esterase Families 1 and 10 in Oomycetes. PMID:32849784
Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation. PMID:32842618
Congruence Amidst Discordance between Sequence and Protein-Content Based Phylogenies of Fungi. PMID:32823730
Sharing a β-Glucan Meal: Transcriptomic Eavesdropping on a Bacteroides ovatus-Subdoligranulum variabile-Hungatella hathewayi Consortium. PMID:32801182
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution. PMID:32770105
Off the wall: The rhyme and reason of Neurospora crassa hyphal morphogenesis. PMID:32743136
Priming and elongation of chitin chains: Implications for chitin synthase mechanism. PMID:32743134
C-Type Lectin Receptors in Host Defense Against Bacterial Pathogens. PMID:32733813
Consumption of a Western-Style Diet Modulates the Response of the Murine Gut Microbiome to Ciprofloxacin. PMID:32723789
A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. PMID:32709972
Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment. PMID:32709946
Amino acid sequence associated with bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer. PMID:32703190
Accessory Chromosomes in Fusarium oxysporum. PMID:32692281
Multi-omic Directed Discovery of Cellulosomes, Polysaccharide Utilization Loci, and Lignocellulases from an Enriched Rumen Anaerobic Consortium. PMID:32680862
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. PMID:32670511
Expression, homology modeling and enzymatic characterization of a new β-mannanase belonging to glycoside hydrolase family 1 from Enterobacter aerogenes B19. PMID:32665004
Comparative Genomics Uncovers the Genetic Diversity and Characters of Veillonella atypica and Provides Insights Into Its Potential Applications. PMID:32655519
Rapid adaptation for fibre degradation by changes in plasmid stoichiometry within Lactobacillus plantarum at the synthetic community level. PMID:32639625
Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation. PMID:32624871
Draft Genome Sequence of the Bacterium Paraburkholderia aromaticivorans AR20-38, a Gram-Negative, Cold-Adapted Degrader of Aromatic Compounds. PMID:32616634
Bioprospecting Microbial Diversity for Lignin Valorization: Dry and Wet Screening Methods. PMID:32582068
Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites. PMID:32576253
Selectins-The Two Dr. Jekyll and Mr. Hyde Faces of Adhesion Molecules-A Review. PMID:32575485
Biocatalysis: Enzymatic Synthesis for Industrial Applications. PMID:32558088
Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7. PMID:32549280
Cloning and Characterization of a New β-Galactosidase from Alteromonas sp. QD01 and Its Potential in Synthesis of Galacto-Oligosaccharides. PMID:32545859
GTDB: an integrated resource for glycosyltransferase sequences and annotations. PMID:32542364
RNA-seq Profiling Showed Divergent Carbohydrate-Active Enzymes (CAZymes) Expression Patterns in Lentinula edodes at Brown Film Formation Stage Under Blue Light Induction. PMID:32536907
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor. PMID:32529805
Characterization of different alginate lyases for dissolving Pseudomonas aeruginosa biofilms. PMID:32523130
Two bacterial glycosphingolipid synthases responsible for the synthesis of glucuronosylceramide and α-galactosylceramide. PMID:32518167
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations. PMID:32513234
Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes. PMID:32483294
Effects of an external magnetic field on microbial functional genes and metabolism of activated sludge based on metagenomic sequencing. PMID:32483239
Genome mining of the citrus pathogen Elsinoë fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters. PMID:32469865
Lifestyle Characteristics and Gene Expression Analysis of Colletotrichum camelliae Isolated from Tea Plant [Camellia sinensis (L.) O. Kuntze] Based on Transcriptome. PMID:32443615
Complete Genome Sequence of the Lignocellulose-Degrading Actinomycete Streptomyces albus CAS922. PMID:32439662
MetaSanity: an integrated microbial genome evaluation and annotation pipeline. PMID:32426808
Novel clostridial lineages recovered from metagenomes of a hot oil reservoir. PMID:32415178
Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective. PMID:32413974
Draft Genome Sequence of Clostridium estertheticum-Like Strain FP3, Isolated from Spoiled Uncooked Lamb. PMID:32409559
Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism. PMID:32404513
Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence. PMID:32404017
Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering. PMID:32396560
Genome Sequencing and Analysis of the Hypocrellin-Producing Fungus Shiraia bambusicola S4201. PMID:32373091
Comparative Genomics Uncovers the Genetic Diversity and Synthetic Biology of Secondary Metabolite Production of Trametes. PMID:32363038
Draft Genome Sequence of Clostridium sp. Strain FP1, with Similarity to Clostridium tagluense, Isolated from Spoiled Lamb. PMID:32354982
Endosidin20 Targets the Cellulose Synthase Catalytic Domain to Inhibit Cellulose Biosynthesis. PMID:32327535
Plant Glycosides and Glycosidases: A Treasure-Trove for Therapeutics. PMID:32318081
Draft Genome Sequence of Psychrotolerant Clostridium sp. Strain M14, Isolated from Spoiled Uncooked Venison. PMID:32299886
Multimodular fused acetyl-feruloyl esterases from soil and gut Bacteroidetes improve xylanase depolymerization of recalcitrant biomass. PMID:32266006
Engineering of Bioenergy Crops: Dominant Genetic Approaches to Improve Polysaccharide Properties and Composition in Biomass. PMID:32218797
Citrus Postharvest Green Mold: Recent Advances in Fungal Pathogenicity and Fruit Resistance. PMID:32209982
Draft Genome Sequence of the Strawberry Anthracnose Pathogen Colletotrichum fructicola. PMID:32193247
Host Genetic and Environmental Factors Shape the Composition and Function of Gut Microbiota in Populations Living at High Altitude. PMID:32190648
Genome Sequence, Assembly, and Characterization of the Antagonistic Yeast Candida oleophila Used as a Biocontrol Agent Against Post-harvest Diseases. PMID:32158440
Global Characterization of GH10 Family Xylanase Genes in Rhizoctonia cerealis and Functional Analysis of Xylanase RcXYN1 During Fungus Infection in Wheat. PMID:32155734
Functional exploration of the GH29 fucosidase family. PMID:32149359
Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children. PMID:32143621
Maize WI5 encodes an endo-1,4-β-xylanase required for secondary cell wall synthesis and water transport in xylem. PMID:32129568
Systematic metadata analysis of brown rot fungi gene expression data reveals the genes involved in Fenton's reaction and wood decay process. PMID:32128279
A comparative genomics study of 23 Aspergillus species from section Flavi. PMID:32107379
O-GlcNAcase contributes to cognitive function in Drosophila. PMID:32094227
Comparative genomics and association analysis identifies virulence genes of Cercospora sojina in soybean. PMID:32075575
Metagenomic Insights into Effects of Thiamine Supplementation on Carbohydrate-Active Enzymes' Profile in Dairy Cows Fed High-Concentrate Diets. PMID:32074983
Draft Genome Sequence of Saccharibacillus sp. Strain WB 17, Isolated from Wheat Phyllosphere. PMID:32054704
The hydrolysis mechanism of a GH45 cellulase and its potential relation to lytic transglycosylase and expansin function. PMID:32054684
Assembly of hundreds of novel bacterial genomes from the chicken caecum. PMID:32051016
Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster). PMID:32038587
"CATAStrophy," a Genome-Informed Trophic Classification of Filamentous Plant Pathogens - How Many Different Types of Filamentous Plant Pathogens Are There? PMID:32038539
3D biofilms: in search of the polysaccharides holding together lichen symbioses. PMID:32037451
Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. PMID:32028108
Complete Genome Sequence Reveals Evolutionary and Comparative Genomic Features of Xanthomonas albilineans Causing Sugarcane Leaf Scald. PMID:32012870
The Genome of the Medicinal Macrofungus Sanghuang Provides Insights Into the Synthesis of Diverse Secondary Metabolites. PMID:31993039
Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. PMID:31992772
Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products. PMID:31980431
The Multiple Facets of Plant-Fungal Interactions Revealed Through Plant and Fungal Secretomics. PMID:31969889
CUPRA-ZYME: An Assay for Measuring Carbohydrate-Active Enzyme Activities, Pathways, and Substrate Specificities. PMID:31961140
Genome-Wide Study of the GATL Gene Family in Gossypium hirsutum L. Reveals that GhGATL Genes Act on Pectin Synthesis to Regulate Plant Growth and Fiber Elongation. PMID:31935825
Effects of spaceflight on the composition and function of the human gut microbiota. PMID:31924114
Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens. PMID:31921065
Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia: Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes. PMID:31919165
Enzyme Activity Profiles Produced on Wood and Straw by Four Fungi of Different Decay Strategies. PMID:31906600
Network analysis exposes core functions in major lifestyles of fungal and oomycete plant pathogens. PMID:31878885
Chromosome-Level Comprehensive Genome of Mangrove Sediment-Derived Fungus Penicillium variabile HXQ-H-1. PMID:31878043
The Structure of Sucrose-Soaked Levansucrase Crystals from Erwinia tasmaniensis reveals a Binding Pocket for Levanbiose. PMID:31877648
[Research progress on carbohydrate active enzymes of human microbiome]. PMID:31875448
Genome Sequencing of Mesonia algae K4-1 Reveals Its Adaptation to the Arctic Ocean. PMID:31866978
Enzymatic activity of a recombinant β-1,4-endoglucanase from the Cotton Boll Weevil (Anthonomus grandis) aiming second generation ethanol production. PMID:31862955
A noncanonical vacuolar sugar transferase required for biosynthesis of antimicrobial defense compounds in oat. PMID:31806756
Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum. PMID:31792008
Genomic, Transcriptomic and Enzymatic Insight into Lignocellulolytic System of a Plant Pathogen Dickeya sp. WS52 to Digest Sweet Pepper and Tomato Stalk. PMID:31756942
Draft Genome Sequence of Clostridium estertheticum subsp. laramiense DSM 14864T, Isolated from Spoiled Uncooked Beef. PMID:31753947
Bifidobacterium bifidum: A Key Member of the Early Human Gut Microbiota. PMID:31717486
Structural and functional analysis of four family 84 glycoside hydrolases from the opportunistic pathogen Clostridium perfringens. PMID:31701135
Biochemical characteristics and synergistic effect of two novel alginate lyases from Photobacterium sp. FC615. PMID:31700543
The C-Type Lysozyme from the upper Gastrointestinal Tract of Opisthocomus hoatzin, the Stinkbird. PMID:31698762
Lignin degradation potential and draft genome sequence of Trametes trogii S0301. PMID:31687044
A two-enzyme constituted mixture to improve the degradation of Arthrospira platensis microalga cell wall for monogastric diets. PMID:31680348
Formation of a Copper(II)-Tyrosyl Complex at the Active Site of Lytic Polysaccharide Monooxygenases Following Oxidation by H2O2. PMID:31675221
Cloning and Characterization of a Cold-adapted Chitosanase from Marine Bacterium Bacillus sp. BY01. PMID:31671673
The whole-genome sequence analysis of Morchella sextelata. PMID:31653932
Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities. PMID:31653790
A New β-Galactosidase from the Antarctic Bacterium Alteromonas sp. ANT48 and Its Potential in Formation of Prebiotic Galacto-Oligosaccharides. PMID:31652852
Leloir Glycosyltransferases in Applied Biocatalysis: A Multidisciplinary Approach. PMID:31652818
The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes. PMID:31652297
Characterization of a highly stable α-galactosidase from thermophilic Rasamsonia emersonii heterologously expressed in a modified Pichia pastoris expression system. PMID:31647018
Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca). PMID:31635158
A Genome-Centric Approach Reveals a Novel Glycosyltransferase from the GA A07 Strain of Bacillus thuringiensis Responsible for Catalyzing 15-O-Glycosylation of Ganoderic Acid A. PMID:31635144
Architecture of the Cellulose Synthase Outer Membrane Channel and Its Association with the Periplasmic TPR Domain. PMID:31604608
Optimization of Saccharomyces cerevisiae α-galactosidase production and application in the degradation of raffinose family oligosaccharides. PMID:31601209
Genomic Insights into the Fungal Lignocellulolytic Machinery of Flammulina rossica. PMID:31597238
The fecal resistome of dairy cattle is associated with diet during nursing. PMID:31562300
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. PMID:31554911
A New Triterpenoid Glucoside from a Novel Acidic Glycosylation of Ganoderic Acid A via Recombinant Glycosyltransferase of Bacillus subtilis. PMID:31554155
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. PMID:31521200
A Comparative Transcriptome Analysis Reveals Physiological Maturation Properties of Mycelia in Pleurotus tuoliensis. PMID:31514481
A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes. PMID:31511626
In vitro and in vivo exploration of the cellobiose and cellodextrin phosphorylases panel in Ruminiclostridium cellulolyticum: implication for cellulose catabolism. PMID:31497068
Draft Genome Sequence of Dicyma pulvinata Strain 414-3, a Mycoparasite of Cladosporium fulvum, Causal Agent of Tomato Leaf Mold. PMID:31467096
Engineering Geobacillus thermoglucosidasius for direct utilisation of holocellulose from wheat straw. PMID:31452680
Characterization of an Alkaline GH49 Dextranase from Marine Bacterium Arthrobacter oxydans KQ11 and Its Application in the Preparation of Isomalto-Oligosaccharide. PMID:31430863
Decreased metabolism and increased tolerance to extreme environments in Staphylococcus warneri during long-term spaceflight. PMID:31414557
Carbon assimilation profiles of mucoralean fungi show their metabolic versatility. PMID:31413281
Data on the genome analysis of the wild edible mushroom, Russula griseocarnosa. PMID:31406907
Design and Optimization of Thioglycosyl-naphthalimides as Efficient Inhibitors Against Human O-GlcNAcase. PMID:31403045
Genome-Wide Identification, Expression Pattern Analysis and Evolution of the Ces/Csl Gene Superfamily in Pineapple (Ananas comosus). PMID:31398920
Cloning of novel bacterial xylanases from lignocellulose-enriched compost metagenomic libraries. PMID:31385056
Contrasting Winter Versus Summer Microbial Communities and Metabolic Functions in a Permafrost Thaw Lake. PMID:31379798
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. PMID:31375809
To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW). PMID:31363751
Effectiveness of Bacillus pumilus PDSLzg-1, an innovative Hydrocarbon-Degrading Bacterium conferring antifungal and plant growth-promoting function. PMID:31355114
Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation. PMID:31338125
Revisiting the Language of Glycoscience: Readers, Writers and Erasers in Carbohydrate Biochemistry. PMID:31317590
Characterization of the GH13 and GH57 glycogen branching enzymes from Petrotoga mobilis SJ95 and potential role in glycogen biosynthesis. PMID:31306450
Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. PMID:31285347
Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. PMID:31277573
Expression and characterization of two chitinases with synergistic effect and antifungal activity from Xenorhabdus nematophila. PMID:31267229
Dynamic and Functional Profiling of Xylan-Degrading Enzymes in Aspergillus Secretomes Using Activity-Based Probes. PMID:31263766
Metatranscriptomics of the Hu sheep rumen microbiome reveals novel cellulases. PMID:31249617
The Sweet Side of Plant-Specialized Metabolism. PMID:31235546
RedoxiBase: A database for ROS homeostasis regulated proteins. PMID:31228650
Technological Aspects of the Production of Fructo and Galacto-Oligosaccharides. Enzymatic Synthesis and Hydrolysis. PMID:31214595
Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus. PMID:31214136
Combinatorial mutation on the β-glycosidase specific to 7-β-xylosyltaxanes and increasing the mutated enzyme production by engineering the recombinant yeast. PMID:31193781
Whole genome sequence of a freshwater agar-degrading bacterium Cellvibrio sp. KY-GH-1. PMID:31193527
Identification of Thermotoga maritima MSB8 GH57 α-amylase AmyC as a glycogen-branching enzyme with high hydrolytic activity. PMID:31190240
Enzymatic Conversion of RBCs by α-N-Acetylgalactosaminidase from Spirosoma linguale. PMID:31186954
Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in Pseudofabraea citricarpa inciting citrus target spot. PMID:31162831
CA-30, an oligosaccharide fraction derived from Liuwei Dihuang decoction, ameliorates cognitive deterioration via the intestinal microbiome in the senescence-accelerated mouse prone 8 strain. PMID:31160541
Prebiotics from Seaweeds: An Ocean of Opportunity? PMID:31159359
Transglycosylation products generated by Talaromyces amestolkiae GH3 β-glucosidases: effect of hydroxytyrosol, vanillin and its glucosides on breast cancer cells. PMID:31151435
Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus Aspergillus salisburgensis and Its Halotolerant Relative Aspergillus sclerotialis. PMID:31137536
Glycoside Hydrolase Genes Are Required for Virulence of Agrobacterium tumefaciens on Bryophyllum daigremontiana and Tomato. PMID:31126942
Conformational Itinerary of Sucrose During Hydrolysis by Retaining Amylosucrase. PMID:31114783
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data. PMID:31111606
Computational Studies on the Potency and Selectivity of PUGNAc Derivatives Against GH3, GH20, and GH84 β-N-acetyl-D-hexosaminidases. PMID:31111026
Fungiculture in Termites Is Associated with a Mycolytic Gut Bacterial Community. PMID:31092601
Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes. PMID:31089985
Plant-necrotroph co-transcriptome networks illuminate a metabolic battlefield. PMID:31081752
Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis. PMID:31073898
Corncob and sugar beet pulp induce specific sets of lignocellulolytic enzymes in Penicillium purpurogenum. PMID:31069125
Glycomimetic affinity-enrichment proteomics identifies partners for a clinically-utilized iminosugar. PMID:31031905
Comparing Hydrolysis and Transglycosylation Reactions Catalyzed by Thermus thermophilus β-Glycosidase. A Combined MD and QM/MM Study. PMID:31024890
Major Traditional Probiotics: Comparative Genomic Analyses and Roles in Gut Microbiome of Eight Cohorts. PMID:31024492
In silico Approach for Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale Analysis. PMID:31024464
Characterization of α-Glucosidases From Lutzomyia longipalpis Reveals Independent Hydrolysis Systems for Plant or Blood Sugars. PMID:31024327
Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli. PMID:31014247
Interaction of carbohydrate-binding modules with poly(ethylene terephthalate). PMID:30993383
Genome-Wide Analysis of Glycoside Hydrolase Family 1 β-glucosidase Genes in Brassica rapa and Their Potential Role in Pollen Development. PMID:30987159
Pycnoporus cinnabarinus glyoxal oxidases display differential catalytic efficiencies on 5-hydroxymethylfurfural and its oxidized derivatives. PMID:30984409
Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Holstein Cows Fed Different Forage-to-Concentrate Ratios. PMID:30984155
Metagenomic Insights Into a Cellulose-Rich Niche Reveal Microbial Cooperation in Cellulose Degradation. PMID:30984144
The Koala (Phascolarctos cinereus) faecal microbiome differs with diet in a wild population. PMID:30972242
Comparative genomics of 40 edible and medicinal mushrooms provide an insight into the evolution of lignocellulose decomposition mechanisms. PMID:30944804
Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis. PMID:30930869
Novel combination of feed enzymes to improve the degradation of Chlorella vulgaris recalcitrant cell wall. PMID:30926940
Comparative Genome and Transcriptome Study of the Gene Expression Difference Between Pathogenic and Environmental Strains of Prototheca zopfii. PMID:30899253
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen. PMID:30894845
16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics. PMID:30889210
Creation of a functional hyperthermostable designer cellulosome. PMID:30858881
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space. PMID:30850540
Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides. PMID:30842872
Structural features underlying recognition and translocation of extracellular polysaccharides. PMID:30842868
Anaerobic Degradation of Sulfated Polysaccharides by Two Novel Kiritimatiellales Strains Isolated From Black Sea Sediment. PMID:30833937
Genome Sequencing Illustrates the Genetic Basis of the Pharmacological Properties of Gloeostereum incarnatum. PMID:30832255
Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families. PMID:30819804
Comparative transcriptomics reveals potential genes involved in the vegetative growth of Morchella importuna. PMID:30800592
Enrichment of bacteria and alginate lyase genes potentially involved in brown alga degradation in the gut of marine gastropods. PMID:30765748
Selecting a Single Stereocenter: The Molecular Nuances That Differentiate β-Hexuronidases in the Human Gut Microbiome. PMID:30729778
Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota. PMID:30701133
Characterization of the Specific Mode of Action of a Chitin Deacetylase and Separation of the Partially Acetylated Chitosan Oligosaccharides. PMID:30678277
Synthetic and Crystallographic Insight into Exploiting sp2 Hybridization in the Development of α-l-Fucosidase Inhibitors. PMID:30663832
Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns. PMID:30655514
Influence of Calcium Ions on the Thermal Characteristics of α-amylase from Thermophilic Anoxybacillus sp. GXS-BL. PMID:30652633
Draft Genome Sequence of an Onion Basal Rot Isolate of Fusarium proliferatum. PMID:30637390
Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis. PMID:30637143
Expression and Characteristics of Two Glucose-Tolerant GH1 β-glucosidases From Actinomadura amylolytica YIM 77502T for Promoting Cellulose Degradation. PMID:30619214
Coupled Carbon, Sulfur, and Nitrogen Cycles Mediated by Microorganisms in the Water Column of a Shallow-Water Hydrothermal Ecosystem. PMID:30555427
The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential. PMID:30541780
The soil organic matter decomposition mechanisms in ectomycorrhizal fungi are tuned for liberating soil organic nitrogen. PMID:30538275
Molecular evolution and transcriptional profile of GH3 and GH20 β-N-acetylglucosaminidases in the entomopathogenic fungus Metarhizium anisopliae. PMID:30534852
Structures of endo-1,5-α-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides. PMID:30511671
Genome-wide CRISPR screens for Shiga toxins and ricin reveal Golgi proteins critical for glycosylation. PMID:30481169
Butyrivibrio hungatei MB2003 Competes Effectively for Soluble Sugars Released by Butyrivibrio proteoclasticus B316T during Growth on Xylan or Pectin. PMID:30478228
Pectin Methylesterases: Cell Wall Remodeling Proteins Are Required for Plant Response to Heat Stress. PMID:30459794
The Botrytis cinerea Xylanase BcXyl1 Modulates Plant Immunity. PMID:30405585
Crystal structure of glycosyltrehalose synthase from Sulfolobus shibatae DSM5389. PMID:30387780
Comparative Genomic and Transcriptomic Analyses of Family-1 UDP Glycosyltransferase in Prunus Mume. PMID:30380641
Genome sequence of the cauliflower mushroom Sparassis crispa (Hanabiratake) and its association with beneficial usage. PMID:30375506
Acylated Aminooligosaccharides with Inhibitory Effects against α-Amylase from Streptomyces sp. HO1518. PMID:30360574
The pathogenic mechanisms of Tilletia horrida as revealed by comparative and functional genomics. PMID:30337609
Engineering a branching sucrase for flavonoid glucoside diversification. PMID:30310109
Comparative metagenomics of the gut microbiota in wild greylag geese (Anser anser) and ruddy shelducks (Tadorna ferruginea). PMID:30296008
In silico characterization of the global Geobacillus and Parageobacillus secretome. PMID:30285747
Analysis of the Transcriptome in Aspergillus tamarii During Enzymatic Degradation of Sugarcane Bagasse. PMID:30280097
Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PMID:30278048
Properties and applications of starch modifying enzymes for use in the baking industry. PMID:30263753
Characterization of Properties and Transglycosylation Abilities of Recombinant α-Galactosidase from Cold-Adapted Marine Bacterium Pseudoalteromonas KMM 701 and Its C494N and D451A Mutants. PMID:30250010
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita. PMID:30239843
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. PMID:30231921
A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data. PMID:30228995
The first complete genomic structure of Butyrivibrio fibrisolvens and its chromid. PMID:30216146
Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding Tolerance. PMID:30208612
Chemical and Biochemical Strategies To Explore the Substrate Recognition of O-GlcNAc-Cycling Enzymes. PMID:30199580
Introgression and gene family contraction drive the evolution of lifestyle and host shifts of hypocrealean fungi. PMID:30181924
An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase. PMID:30169639
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. PMID:30158906
Genome analysis of the ubiquitous boxwood pathogen Pseudonectria foliicola. PMID:30155349
Who's on base? Revealing the catalytic mechanism of inverting family 6 glycoside hydrolases. PMID:30155195
The Genome of a Thermo Tolerant, Pathogenic Albino Aspergillus fumigatus. PMID:30154766
Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification. PMID:30151054
Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes. PMID:30137359
Transcriptome analysis of Valsa mali reveals its response mechanism to the biocontrol actinomycete Saccharothrix yanglingensis Hhs.015. PMID:30134836
Ability of fungi isolated from plastic debris floating in the shoreline of a lake to degrade plastics. PMID:30133489
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi. PMID:30123665
Links between environment, diet, and the hunter-gatherer microbiome. PMID:30118385
Metagenomic Analysis of Bacteria, Fungi, Bacteriophages, and Helminths in the Gut of Giant Pandas. PMID:30108570
Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica. PMID:30104475
Cloning and characterization of a chitinase from Thermobifida fusca reveals Tfu_0580 as a thermostable and acidic endochitinase. PMID:30094208
Structure of the GH9 glucosidase/glucosaminidase from Vibrio cholerae. PMID:30084401
Functional Expression of a Thermostable Endoglucanase from Thermoascus aurantiacus RCKK in Pichia pastoris X-33 and Its Characterization. PMID:30076532
Changes in feeding habits promoted the differentiation of the composition and function of gut microbiotas between domestic dogs (Canis lupus familiaris) and gray wolves (Canis lupus). PMID:30073560
Combining multi-scale modelling methods to decipher molecular motions of a branching sucrase from glycoside-hydrolase family 70. PMID:30067837
A Novel β-Glucuronidase from Talaromyces pinophilus Li-93 Precisely Hydrolyzes Glycyrrhizin into Glycyrrhetinic Acid 3-O-Mono-β-d-Glucuronide. PMID:30054355
Molecular Cloning and Characterization of a Novel α-Amylase from Antarctic Sea Ice Bacterium Pseudoalteromonas sp. M175 and Its Primary Application in Detergent. PMID:30050926
Lafora Disease: A Ubiquitination-Related Pathology. PMID:30050012
Analysis of the Complete Genome Sequence of Bacillus atrophaeus GQJK17 Reveals Its Biocontrol Characteristics as a Plant Growth-Promoting Rhizobacterium. PMID:30046614
Haemophilus parasuis α-2,3-sialyltransferase-mediated lipooligosaccharide sialylation contributes to bacterial pathogenicity. PMID:30036124
In silico analysis of the α-amylase family GH57: eventual subfamilies reflecting enzyme specificities. PMID:29998051
Transcriptome-Guided Identification of Carbohydrate Active Enzymes (CAZy) from the Christmas Island Red Crab, Gecarcoidea natalis and a Vote for the Inclusion of Transcriptome-Derived Crustacean CAZys in Comparative Studies. PMID:29995174
Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals. PMID:29925310
Introduction of novel thermostable α-amylases from genus Anoxybacillus and proposing to group the Bacillaceae related α-amylases under five individual GH13 subfamilies. PMID:29904894
Distinct Substrate Specificities and Electron-Donating Systems of Fungal Lytic Polysaccharide Monooxygenases. PMID:29896168
Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasion. PMID:29894496
Proteiniphilum saccharofermentans str. M3/6T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions. PMID:29892569
Genome-Wide Identification and Expression Profiling Analysis of the Xyloglucan Endotransglucosylase/Hydrolase Gene Family in Tobacco (Nicotiana tabacum L.). PMID:29795009
Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains. PMID:29794055
SAMSA2: a standalone metatranscriptome analysis pipeline. PMID:29783945
Genus-wide comparison of Pseudovibrio bacterial genomes reveal diverse adaptations to different marine invertebrate hosts. PMID:29775460
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. PMID:29771380
Interaction of antidiabetic α-glucosidase inhibitors and gut bacteria α-glucosidase. PMID:29761590
Cloning, purification and biochemical characterisation of a GH35 beta-1,3/beta-1,6-galactosidase from the mucin-degrading gut bacterium Akkermansia muciniphila. PMID:29754312
Novel Maltogenic Amylase CoMA from Corallococcus sp. Strain EGB Catalyzes the Conversion of Maltooligosaccharides and Soluble Starch to Maltose. PMID:29752267
A highly glucose-tolerant GH1 β-glucosidase with greater conversion rate of soybean isoflavones in monogastric animals. PMID:29744673
Peeling the onion: the outer layers of Cryptococcus neoformans. PMID:29742198
Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides. PMID:29735649
Fine-Tuned Enzymatic Hydrolysis of Organosolv Pretreated Forest Materials for the Efficient Production of Cellobiose. PMID:29725590
Regulation of plant cell wall degradation by light in Trichoderma. PMID:29713489
A protocol for culturing environmental strains of the Buruli ulcer agent, Mycobacterium ulcerans. PMID:29712992
The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach. PMID:29698417
Discovery of a Kojibiose Phosphorylase in Escherichia coli K-12. PMID:29684280
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. PMID:29679020
Probing the Inhibitor versus Chaperone Properties of sp²-Iminosugars towards Human β-Glucocerebrosidase: A Picomolar Chaperone for Gaucher Disease. PMID:29673163
Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean. PMID:29670596
Genome Sequence, Assembly and Characterization of Two Metschnikowia fructicola Strains Used as Biocontrol Agents of Postharvest Diseases. PMID:29666611
Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis. PMID:29666196
A Retrospective Review of Microbiological Methods Applied in Studies Following the Deepwater Horizon Oil Spill. PMID:29628913
The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate. PMID:29588665
Molecular Networks of Postia placenta Involved in Degradation of Lignocellulosic Biomass Revealed from Metadata Analysis of Open Access Gene Expression Data. PMID:29559843
Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. PMID:29551995
Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi. PMID:29540755
Insights into toxic Prymnesium parvum blooms: the role of sugars and algal viruses. PMID:29540506
Identification of sucA, Encoding β-Fructofuranosidase, in Rhizopus microsporus. PMID:29534041
Clavibacter michiganensis ssp. michiganensis: bacterial canker of tomato, molecular interactions and disease management. PMID:29528201
Purification and Characterization of a Novel Alginate Lyase from the Marine Bacterium Bacillus sp. Alg07. PMID:29522433
Regional Heritability Mapping Provides Insights into Dry Matter Content in African White and Yellow Cassava Populations. PMID:29505634
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement. PMID:29503654
Functional Characterization of a Flavonoid Glycosyltransferase in Sweet Orange (Citrus sinensis). PMID:29497429
Genome-reconstruction for eukaryotes from complex natural microbial communities. PMID:29496730
The structural and functional contributions of β-glucosidase-producing microbial communities to cellulose degradation in composting. PMID:29492106
Two genes encoding GH10 xylanases are essential for the virulence of the oomycete plant pathogen Phytophthora parasitica. PMID:29470644
De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust. PMID:29463655
Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. PMID:29453368
The unique evolution of the carbohydrate-binding module CBM20 in laforin. PMID:29389008
Comparative genomic and transcriptomic analyses of Family-1 UDP glycosyltransferase in three Brassica species and Arabidopsis indicates stress-responsive regulation. PMID:29382843
Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus. PMID:29371885
Acidic Chitinase-Chitin Complex Is Dissociated in a Competitive Manner by Acetic Acid: Purification of Natural Enzyme for Supplementation Purposes. PMID:29370114
Systems analysis of the glycoside hydrolase family 18 enzymes from Cellvibrio japonicus characterizes essential chitin degradation functions. PMID:29367339
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. PMID:29358710
Functional Characteristics of the Flying Squirrel's Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic Profiling. PMID:29354108
Characterization of novel endo-β-N-acetylglucosaminidases from Sphingobacterium species, Beauveria bassiana and Cordyceps militaris that specifically hydrolyze fucose-containing oligosaccharides and human IgG. PMID:29321565
Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides. PMID:29321239
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:29316735
Simultaneous Silencing of Xylanase Genes in Botrytis cinerea. PMID:29312413
Glycoengineering of antibody (Herceptin) through yeast expression and in vitro enzymatic glycosylation. PMID:29311294
Characterization of a long-chain α-galactosidase from Papiliotrema flavescens. PMID:29302817
Analysis of the hybrid genomes of two field isolates of the soil-borne fungal species Verticillium longisporum. PMID:29298673
Functional and cooperative stabilization of a two-metal (Ca, Zn) center in α-amylase derived from Flavobacteriaceae species. PMID:29263337
Enterotypes in the landscape of gut microbial community composition. PMID:29255284
Conservation and divergence of Starch Synthase III genes of monocots and dicots. PMID:29240782
Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose. PMID:29238402
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003. PMID:29225728
Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. PMID:29222443
High-quality draft genome sequence of Aquidulcibacter paucihalophilus TH1-2T isolated from cyanobacterial aggregates in a eutrophic lake. PMID:29213356
A tandem CBM25 domain of α-amylase from Microbacterium aurum as potential tool for targeting proteins to starch granules during starch biosynthesis. PMID:29202734
A novel GH10 xylanase from Penicillium sp. accelerates saccharification of alkaline-pretreated bagasse by an enzyme from recombinant Trichoderma reesei expressing Aspergillus β-glucosidase. PMID:29201142
Identification and characterization of six glycosyltransferases involved in the biosynthesis of a new bacterial exopolysaccharide in Paenibacillus elgii. PMID:29199353
Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation. PMID:29196950
GH30 Glucuronoxylan-Specific Xylanase from Streptomyces turgidiscabies C56. PMID:29180367
Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion. PMID:29177117
Transcriptomic profiling of Alternaria longipes invasion in tobacco reveals pathogenesis regulated by AlHK1, a group III histidine kinase. PMID:29167535
Opposing Functions of Heparanase-1 and Heparanase-2 in Cancer Progression. PMID:29162390
Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea. PMID:29158777
Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars. PMID:29155571
Diversity of Three-Dimensional Structures and Catalytic Mechanisms of Alginate Lyases. PMID:29150496
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales. PMID:29145801
Application of termite hindgut metagenome derived carboxyl ester hydrolases in the modification of cephalosporin substrates. PMID:29124186
The stability of the TIM-barrel domain of a psychrophilic chitinase. PMID:29124173
Carbohydrate active enzyme domains from extreme thermophiles: components of a modular toolbox for lignocellulose degradation. PMID:29110088
Human microbiome signatures of differential colorectal cancer drug metabolism. PMID:29104759
A single nucleotide polymorphism in the "Fra" gene results in fractured starch granules in barley. PMID:29098311
The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site topology. PMID:29095151
Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter. PMID:29085339
Comparative genomics reveals cotton-specific virulence factors in flexible genomic regions in Verticillium dahliae and evidence of horizontal gene transfer from Fusarium. PMID:29084346
Comparative Genomics of Sibling Species of Fonsecaea Associated with Human Chromoblastomycosis. PMID:29062304
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. PMID:29057953
Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas. PMID:29047329
Single-molecule study of oxidative enzymatic deconstruction of cellulose. PMID:29026070
Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides. PMID:29020628
A mutation in an exoglucanase of Xanthomonas oryzae pv. oryzae, which confers an endo mode of activity, affects bacterial virulence, but not the induction of immune responses, in rice. PMID:28976110
RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger. PMID:28955445
Metatranscriptomics Reveals the Functions and Enzyme Profiles of the Microbial Community in Chinese Nong-Flavor Liquor Starter. PMID:28955318
Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa. PMID:28947916
Genomic and transcriptomic analysis of the toluene degrading black yeast Cladophialophora immunda. PMID:28900256
Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone". PMID:28900024
Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton. PMID:28895945
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. PMID:28892507
Succession and Fermentation Products of Grass Carp (Ctenopharyngodon idellus) Hindgut Microbiota in Response to an Extreme Dietary Shift. PMID:28871246
MEGGASENSE - The Metagenome/Genome Annotated Sequence Natural Language Search Engine: A Platform for the Construction of Sequence Data Warehouses. PMID:28867956
Optimization of a metatranscriptomic approach to study the lignocellulolytic potential of the higher termite gut microbiome. PMID:28863779
Transcriptome analysis reveals the host selection fitness mechanisms of the Rhizoctonia solani AG1IA pathogen. PMID:28860554
Complete Genome Sequence of Bacillus velezensis GQJK49, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity. PMID:28860261
Whole-Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Mycobacterium dioxanotrophicus PH-06. PMID:28860235
Evolution and functional characterization of CAZymes belonging to subfamily 10 of glycoside hydrolase family 5 (GH5_10) in two species of phytophagous beetles. PMID:28854242
Alternaria Toxins: Potential Virulence Factors and Genes Related to Pathogenesis. PMID:28848500
Picomolar inhibition of β-galactosidase (bovine liver) attributed to loop closure. PMID:28844803
Comparative Phenotype and Genome Analysis of Cellvibrio sp. PR1, a Xylanolytic and Agarolytic Bacterium from the Pearl River. PMID:28798934
SAXS Studies of the Endoglucanase Cel12A from Gloeophyllum trabeum Show Its Monomeric Structure and Reveal the Influence of Temperature on the Structural Stability of the Enzyme. PMID:28788125
Differential gene expression in tomato fruit and Colletotrichum gloeosporioides during colonization of the RNAi-SlPH tomato line with reduced fruit acidity and higher pH. PMID:28778147
Synthesis and Self-Assembly of Cellulose Microfibrils from Reconstituted Cellulose Synthase. PMID:28768815
Glucosylglycerate Phosphorylase, an Enzyme with Novel Specificity Involved in Compatible Solute Metabolism. PMID:28754708
Nutrient Acquisition and the Metabolic Potential of Photoferrotrophic Chlorobi. PMID:28729857
Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation. PMID:28720902
Enzymatic Mechanism for Arabinan Degradation and Transport in the Thermophilic Bacterium Caldanaerobius polysaccharolyticus. PMID:28710263
BcXYG1, a Secreted Xyloglucanase from Botrytis cinerea, Triggers Both Cell Death and Plant Immune Responses. PMID:28710128
Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton. PMID:28693426
Pectin methylesterase is required for guard cell function in response to heat. PMID:28617153
Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis. PMID:28595570
Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates. PMID:28588026
Activity-based probes for functional interrogation of retaining β-glucuronidases. PMID:28581485
Complete Genome Sequence of Bacillus subtilis GQJK2, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity. PMID:28572331
Genome-wide characterization of cellulases from the hemi-biotrophic plant pathogen, Bipolaris sorokiniana, reveals the presence of a highly stable GH7 endoglucanase. PMID:28559926
Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. PMID:28545131
Biochemical Characterization of the Functional Roles of Residues in the Active Site of the β-Galactosidase from Bacillus circulans ATCC 31382. PMID:28538097
Harnessing plant metabolic diversity. PMID:28527344
Verticillium dahliae transcription factor VdFTF1 regulates the expression of multiple secreted virulence factors and is required for full virulence in cotton. PMID:28520093
Recombinant expression of thermostable processive MtEG5 endoglucanase and its synergism with MtLPMO from Myceliophthora thermophila during the hydrolysis of lignocellulosic substrates. PMID:28515785
The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity. PMID:28496210
Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1. PMID:28443080
Draft Genome Sequence of Methylocaldum sp. Strain 14B, an Obligate Hydrogen Sulfide-Tolerant Methanotrophic Strain That Can Convert Biogas to Methanol. PMID:28428289
Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew. PMID:28408913
EOGT and O-GlcNAc on secreted and membrane proteins. PMID:28408480
A Phylogenetically Informed Comparison of GH1 Hydrolases between Arabidopsis and Rice Response to Stressors. PMID:28392792
Isomaltooligosaccharide-binding structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase. PMID:28385816
Production of homogeneous glycoprotein with multisite modifications by an engineered N-glycosyltransferase mutant. PMID:28381551
PECTIN METHYLESTERASE34 Contributes to Heat Tolerance through Its Role in Promoting Stomatal Movement. PMID:28381503
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota). PMID:28348446
Insights into activity and inhibition from the crystal structure of human O-GlcNAcase. PMID:28346407
Structural and functional insight into human O-GlcNAcase. PMID:28346405
Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus. PMID:28344649
Broad Analysis of Vicinal Disulfides: Occurrences, Conformations with Cis or with Trans Peptides, and Functional Roles Including Sugar Binding. PMID:28336403
Bacterial carrageenases: an overview of production and biotechnological applications. PMID:28330218
Catalytic properties, functional attributes and industrial applications of β-glucosidases. PMID:28330074
Draft Genome Sequence of Rhizobium sp. Strain TBD182, an Antagonist of the Plant-Pathogenic Fungus Fusarium oxysporum, Isolated from a Novel Hydroponics System Using Organic Fertilizer. PMID:28302768
A new group of glycoside hydrolase family 13 α-amylases with an aberrant catalytic triad. PMID:28287181
Gene expression metadata analysis reveals molecular mechanisms employed by Phanerochaete chrysosporium during lignin degradation and detoxification of plant extractives. PMID:28275822
Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences. PMID:28273103
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. PMID:28265262
Cell Wall Remodeling in Abscission Zone Cells during Ethylene-Promoted Fruit Abscission in Citrus. PMID:28228766
Purification, characterization, and overexpression of an endo-1,4-β-mannanase from thermotolerant Bacillus sp. SWU60. PMID:28220352
Mechanistic insight into the substrate specificity of 1,2-β-oligoglucan phosphorylase from Lachnoclostridium phytofermentans. PMID:28198470
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses. PMID:28198423
Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet. PMID:28197133
Bound Substrate in the Structure of Cyanobacterial Branching Enzyme Supports a New Mechanistic Model. PMID:28193843
Complete Genome Sequence of Paenibacillus polymyxa YC0136, a Plant Growth-Promoting Rhizobacterium Isolated from Tobacco Rhizosphere. PMID:28183774
Stability and Ligand Promiscuity of Type A Carbohydrate-binding Modules Are Illustrated by the Structure of Spirochaeta thermophila StCBM64C. PMID:28179427
Genome Sequence of Microbulbifer mangrovi DD-13T Reveals Its Versatility to Degrade Multiple Polysaccharides. PMID:28161851
Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens. PMID:28158290
Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6. PMID:28154171
Draft genome sequence of Karnal bunt pathogen (Tilletia indica) of wheat provides insights into the pathogenic mechanisms of quarantined fungus. PMID:28152050
Genomic insight into pathogenicity of dematiaceous fungus Corynespora cassiicola. PMID:28149676
Grass Cell Walls: A Story of Cross-Linking. PMID:28149301
The morphogenesis-related NDR kinase pathway of Colletotrichum orbiculare is required for translating plant surface signals into infection-related morphogenesis and pathogenesis. PMID:28146587
Metagenomic Analysis of Silage. PMID:28117801
MetaSort untangles metagenome assembly by reducing microbial community complexity. PMID:28112173
A Novel Multi-domain High Molecular, Salt-Stable Alkaline Xylanase from Alkalibacterium sp. SL3. PMID:28101084
Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau. PMID:28087533
Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP). PMID:28083757
The Plasmin-Sensitive Protein Pls in Methicillin-Resistant Staphylococcus aureus (MRSA) Is a Glycoprotein. PMID:28081265
Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system. PMID:28078050
A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. PMID:28073340
Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome. PMID:28070679
Genome-Based Taxonomic Classification of Bacteroidetes. PMID:28066339
When substrate inhibits and inhibitor activates: implications of β-glucosidases. PMID:28053666
Metagenomic insights into the rumen microbial fibrolytic enzymes in Indian crossbred cattle fed finger millet straw. PMID:28050853
Structure prediction and network analysis of chitinases from the Cape sundew, Drosera capensis. PMID:28040565
Comparing Galactan Biosynthesis in Mycobacterium tuberculosis and Corynebacterium diphtheriae. PMID:28039359
Novel product specificity toward erlose and panose exhibited by multisite engineered mutants of amylosucrase. PMID:28019698
Biochemical and structural characterization of a novel halotolerant cellulase from soil metagenome. PMID:28008971
Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota. PMID:27984592
Fluorescent mannosides serve as acceptor substrates for glycosyltransferase and sugar-1-phosphate transferase activities in Euglena gracilis membranes. PMID:27960097
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. PMID:27941956
The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase from Klebsiella pneumoniae. PMID:27917834
Heparanase: From basic research to therapeutic applications in cancer and inflammation. PMID:27912844
Genomic and Transcriptomic Evidence for Carbohydrate Consumption among Microorganisms in a Cold Seep Brine Pool. PMID:27895636
Optimizing the expression of a Heterologous chitinase: A study of different promoters. PMID:27893301
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. PMID:27875982
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion. PMID:27849518
Characterization of the Verticillium dahliae Exoproteome Involves in Pathogenicity from Cotton-Containing Medium. PMID:27840627
The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection. PMID:27822460
Chitin and Chitosan: Production and Application of Versatile Biomedical Nanomaterials. PMID:27819009
Kinetic study of a β-mannanase from the Bacillus licheniformis HDYM-04 and its decolorization ability of twenty-two structurally different dyes. PMID:27818862
Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats. PMID:27790196
Expanding the Knowledge on Lignocellulolytic and Redox Enzymes of Worker and Soldier Castes from the Lower Termite Coptotermes gestroi. PMID:27790186
Inter-domain Synergism Is Required for Efficient Feeding of Cellulose Chain into Active Site of Cellobiohydrolase Cel7A. PMID:27780868
The targeting of starch binding domains from starch synthase III to the cell wall alters cell wall composition and properties. PMID:27770231
Multiple cellobiohydrolases and cellobiose phosphorylases cooperate in the ruminal bacterium Ruminococcus albus 8 to degrade cellooligosaccharides. PMID:27748409
The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal-Microbe Interactions of Ecological Relevance. PMID:27721806
Functional Properties of Mouse Chitotriosidase Expressed in the Periplasmic Space of Escherichia coli. PMID:27716783
High-throughput Screening of Carbohydrate-degrading Enzymes Using Novel Insoluble Chromogenic Substrate Assay Kits. PMID:27684747
Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan. PMID:27681607
Structural and Functional Characterization of a Ruminal β-Glycosidase Defines a Novel Subfamily of Glycoside Hydrolase Family 3 with Permuted Domain Topology. PMID:27679487
Differential Communications between Fungi and Host Plants Revealed by Secretome Analysis of Phylogenetically Related Endophytic and Pathogenic Fungi. PMID:27658302
Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements. PMID:27658241
MetaStorm: A Public Resource for Customizable Metagenomics Annotation. PMID:27632579
Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657). PMID:27621378
Condition-dependent co-regulation of genomic clusters of virulence factors in the grapevine trunk pathogen Neofusicoccum parvum. PMID:27608421
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. PMID:27601008
Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils. PMID:27590813
A Lytic Polysaccharide Monooxygenase with Broad Xyloglucan Specificity from the Brown-Rot Fungus Gloeophyllum trabeum and Its Action on Cellulose-Xyloglucan Complexes. PMID:27590806
Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments. PMID:27572832
Characterization of a glucose-tolerant β-glucosidase from Anoxybacillus sp. DT3-1. PMID:27555880
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. PMID:27552843
Soil and leaf litter metaproteomics-a brief guideline from sampling to understanding. PMID:27549116
Molecular, Structural and Immunological Characterization of Der p 18, a Chitinase-Like House Dust Mite Allergen. PMID:27548813
Immobilization of Glycoside Hydrolase Families GH1, GH13, and GH70: State of the Art and Perspectives. PMID:27548117
Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae. PMID:27527502
Phylogenetic-Derived Insights into the Evolution of Sialylation in Eukaryotes: Comprehensive Analysis of Vertebrate β-Galactoside α2,3/6-Sialyltransferases (ST3Gal and ST6Gal). PMID:27517905
Heterologous, Expression, and Characterization of Thermostable Glucoamylase Derived from Aspergillus flavus NSH9 in Pichia pastoris. PMID:27504454
An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates. PMID:27502277
Cel5I, a SLH-Containing Glycoside Hydrolase: Characterization and Investigation on Its Role in Ruminiclostridium cellulolyticum. PMID:27501457
Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation. PMID:27500531
Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. PMID:27496087
Characterization of a New Cold-Adapted and Salt-Activated Polysaccharide Lyase Family 7 Alginate Lyase from Pseudoalteromonas sp. SM0524. PMID:27486451
The Genome of Undifilum oxytropis Provides Insights into Swainsonine Biosynthesis and Locoism. PMID:27477109
Synthesizing a Cellulase like Chimeric Protein by Recombinant Molecular Biology Techniques. PMID:27468362
Characterisation of a New Fungal Immunomodulatory Protein from Tiger Milk mushroom, Lignosus rhinocerotis. PMID:27460640
Post-Synthetic Defucosylation of AGP by Aspergillus nidulans α-1,2-Fucosidase Expressed in Arabidopsis Apoplast Induces Compensatory Upregulation of α-1,2-Fucosyltransferases. PMID:27448235
Functional Exploration of the Polysaccharide Lyase Family PL6. PMID:27438604
Amino Groups of Chitosan Are Crucial for Binding to a Family 32 Carbohydrate Binding Module of a Chitosanase from Paenibacillus elgii. PMID:27405759
Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanases and polygalacturonases of Fusarium virguliforme. PMID:27405320
Conformational Change in the Active Site of Streptococcal Unsaturated Glucuronyl Hydrolase Through Site-Directed Mutagenesis at Asp-115. PMID:27402448
Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. PMID:27389966
A single amino acid substitution in a chitinase of the legume Medicago truncatula is sufficient to gain Nod-factor hydrolase activity. PMID:27383628
Discovery of new cellulases from the metagenome by a metagenomics-guided strategy. PMID:27382415
Draft Genome Sequence of Achromobacter sp. Strain AR476-2, Isolated from a Cellulolytic Consortium. PMID:27340069
Functional coherence metrics in protein families. PMID:27338101
Activating Intrinsic Carbohydrate-Active Enzymes of the Smut Fungus Ustilago maydis for the Degradation of Plant Cell Wall Components. PMID:27316952
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). PMID:27313837
Horizontal Gene Transfer Contributes to the Evolution of Arthropod Herbivory. PMID:27307274
Fidelity and Promiscuity of a Mycobacterial Glycosyltransferase. PMID:27302377
Pcal_0768, a hyperactive 4-α-glucanotransferase from Pyrobacculum calidifontis. PMID:27295220
A β-mannan utilization locus in Bacteroides ovatus involves a GH36 α-galactosidase active on galactomannans. PMID:27288925
Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. PMID:27274783
Functional diversity of family 3 β-glucosidases from thermophilic cellulolytic fungus Humicola insolens Y1. PMID:27271847
Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus. PMID:27263016
Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness. PMID:27255518
Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.). PMID:27253872
Metagenomic Analysis of the Rumen Microbiome of Steers with Wheat-Induced Frothy Bloat. PMID:27242715
Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria. PMID:27242705
Tricking Arthrinium malaysianum into Producing Industrially Important Enzymes Under 2-Deoxy D-Glucose Treatment. PMID:27242677
Cloning, Expression and Biochemical Characterization of Endomannanases from Thermobifida Species Isolated from Different Niches. PMID:27223892
The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases. PMID:27223845
The two Rasamsonia emersonii α-glucuronidases, ReGH67 and ReGH115, show a different mode-of-action towards glucuronoxylan and glucuronoxylo-oligosaccharides. PMID:27195020
Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. PMID:27177190
Comparative Genomics of Pathogens Causing Brown Spot Disease of Tobacco: Alternaria longipes and Alternaria alternata. PMID:27159564
Remarkable evolutionary relatedness among the enzymes and proteins from the α-amylase family. PMID:27154042
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PMID:27153332
Unique carbohydrate binding platforms employed by the glucan phosphatases. PMID:27147465
Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum. PMID:27146851
GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families. PMID:27141938
Amylolytic glycoside hydrolases. PMID:27130913
Heterogeneity in the Histidine-brace Copper Coordination Sphere in Auxiliary Activity Family 10 (AA10) Lytic Polysaccharide Monooxygenases. PMID:27129229
X-Ray Crystal Structure of the Full Length Human Chitotriosidase (CHIT1) Reveals Features of Its Chitin Binding Domain. PMID:27111557
Synergistic enhancement of cellulase pairs linked by consensus ankyrin repeats: Determination of the roles of spacing, orientation, and enzyme identity. PMID:27071357
Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. PMID:27065971
Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. PMID:27054497
Adaptor Scaffoldins: An Original Strategy for Extended Designer Cellulosomes, Inspired from Nature. PMID:27048796
Mycoplasma agalactiae Secretion of β-(1→6)-Glucan, a Rare Polysaccharide in Prokaryotes, Is Governed by High-Frequency Phase Variation. PMID:27037120
De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways. PMID:27036298
Ligand-binding specificity and promiscuity of the main lignocellulolytic enzyme families as revealed by active-site architecture analysis. PMID:27009476
Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions. PMID:27006690
Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling. PMID:27003245
Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass. PMID:26989443
Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast. PMID:26974960
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
Observing cellulose biosynthesis and membrane translocation in crystallo. PMID:26958837
A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction. PMID:26956617
Structural and Enzymatic Characterization of ABgp46, a Novel Phage Endolysin with Broad Anti-Gram-Negative Bacterial Activity. PMID:26955368
Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482. PMID:26950732
Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. PMID:26945779
Targeting the trehalose utilization pathways of Mycobacterium tuberculosis. PMID:26941930
Structural mechanisms of plant glucan phosphatases in starch metabolism. PMID:26934589
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. PMID:26928935
nagZ Triggers Gonococcal Biofilm Disassembly. PMID:26927542
Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site. PMID:26913091
Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi. PMID:26911875
Functional and Structural Analysis of a β-Glucosidase Involved in β-1,2-Glucan Metabolism in Listeria innocua. PMID:26886583
De Novo Analysis of Wolfiporia cocos Transcriptome to Reveal the Differentially Expressed Carbohydrate-Active Enzymes (CAZymes) Genes During the Early Stage of Sclerotial Growth. PMID:26870032
Structural Insights into the Carbohydrate Binding Ability of an α-(1→2) Branching Sucrase from Glycoside Hydrolase Family 70. PMID:26865636
A Glycosyltransferase from Nicotiana alata Pollen Mediates Synthesis of a Linear (1,5)-α-L-Arabinan When Expressed in Arabidopsis. PMID:26850276
Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination. PMID:26826221
Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii. PMID:26824923
A trehalase from Zunongwangia sp.: characterization and improving catalytic efficiency by directed evolution. PMID:26822136
Mucin-Microbiota Interaction During Postnatal Maturation of the Intestinal Ecosystem: Clinical Implications. PMID:26792279
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois). PMID:26789269
Modulation of the human gut microbiota by dietary fibres occurs at the species level. PMID:26754945
Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms. PMID:26741367
Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation. PMID:26734033
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis. PMID:26729507
The role of the intestinal microbiota in type 1 diabetes mellitus. PMID:26729037
Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules. PMID:26697109
Genomic analysis of Luteimonas abyssi XH031(T): insights into its adaption to the subseafloor environment of South Pacific Gyre and ecological role in biogeochemical cycle. PMID:26690083
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. PMID:26643441
High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism. PMID:26634758
A mechanism of glucose tolerance and stimulation of GH1 β-glucosidases. PMID:26603650
Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots. PMID:26603211
Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases. PMID:26579511
Structural characterization of human heparanase reveals insights into substrate recognition. PMID:26575439
Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae. PMID:26573537
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea. PMID:26573375
Parasite Glycobiology: A Bittersweet Symphony. PMID:26562305
Global Profiling of Carbohydrate Active Enzymes in Human Gut Microbiome. PMID:26544883
The Pectin Methylesterase Gene Complement of Phytophthora sojae: Structural and Functional Analyses, and the Evolutionary Relationships with Its Oomycete Homologs. PMID:26544849
Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection. PMID:26536465
Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development. PMID:26531059
Identification and Characterization of a New 7-Aminocephalosporanic Acid Deacetylase from Thermophilic Bacterium Alicyclobacillus tengchongensis. PMID:26527640
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. PMID:26527297
New insight into the catalytic properties of rice sucrose synthase. PMID:26520834
Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi. PMID:26511477
Functional demonstrations of starch binding domains present in Ostreococcus tauri starch synthases isoforms. PMID:26510916
Structure-Function Analysis of a Mixed-linkage β-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4. PMID:26507654
Cloning, Expression, and Characterization of a Thermophilic Endoglucanase, AcCel12B from Acidothermus cellulolyticus 11B. PMID:26506341
Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1). PMID:26504082
mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis. PMID:26500804
Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units in wastewater treatment process. PMID:26500698
Influence of Substrates on the Surface Characteristics and Membrane Proteome of Fibrobacter succinogenes S85. PMID:26492413
Evidence for a Functional O-Linked N-Acetylglucosamine (O-GlcNAc) System in the Thermophilic Bacterium Thermobaculum terrenum. PMID:26491011
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils. PMID:26490729
Evaluation and directed evolution for thermostability improvement of a GH 13 thermostable α-glucosidase from Thermus thermophilus TC11. PMID:26490269
A novel surfactant-, NaCl-, and protease-tolerant β-mannanase from Bacillus sp. HJ14. PMID:26489953
Putative Alginate Assimilation Process of the Marine Bacterium Saccharophagus degradans 2-40 Based on Quantitative Proteomic Analysis. PMID:26458373
Biopolymers from lactic acid bacteria. Novel applications in foods and beverages. PMID:26441845
A catalog of the mouse gut metagenome. PMID:26414350
Cellulosomics of the cellulolytic thermophile Clostridium clariflavum. PMID:26413154
Purification and characterization of cold-adapted beta-agarase from an Antarctic psychrophilic strain. PMID:26413048
Localization and Quantification of Callose in the Streptophyte Green Algae Zygnema and Klebsormidium: Correlation with Desiccation Tolerance. PMID:26412780
Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker. PMID:26401442
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores. PMID:26393325
Novel β-1,4-Mannanase Belonging to a New Glycoside Hydrolase Family in Aspergillus nidulans. PMID:26385921
RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma novo-ulmi. PMID:26384770
High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes. PMID:26380634
GnT1IP-L specifically inhibits MGAT1 in the Golgi via its luminal domain. PMID:26371870
Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. PMID:26343383
Insights into the structure and function of membrane-integrated processive glycosyltransferases. PMID:26342143
Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes. PMID:26337239
RNA-Seq Analysis of the Expression of Genes Encoding Cell Wall Degrading Enzymes during Infection of Lupin (Lupinus angustifolius) by Phytophthora parasitica. PMID:26332397
Draft Genome Sequence of Dysgonomonas macrotermitis Strain JCM 19375T, Isolated from the Gut of a Termite. PMID:26316633
Equol status and changes in fecal microbiota in menopausal women receiving long-term treatment for menopause symptoms with a soy-isoflavone concentrate. PMID:26300856
Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice. PMID:26290597
Structural characterization of the carbohydrate-binding module of NanA sialidase, a pneumococcal virulence factor. PMID:26289431
Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends. PMID:26275154
A comparative molecular dynamics study of thermophilic and mesophilic β-fructosidase enzymes. PMID:26267297
Remote homology and the functions of metagenomic dark matter. PMID:26257768
Semirational Directed Evolution of Loop Regions in Aspergillus japonicus β-Fructofuranosidase for Improved Fructooligosaccharide Production. PMID:26253664
Crystallization and crystallographic analysis of branching enzymes from Cyanothece sp. ATCC 51142. PMID:26249708
Molecular cloning, overexpression, purification and crystallographic analysis of a GH43 β-xylosidase from Bacillus licheniformis. PMID:26249682
Identification of promising host-induced silencing targets among genes preferentially transcribed in haustoria of Puccinia. PMID:26238441
Genome wide comprehensive analysis and web resource development on cell wall degrading enzymes from phyto-parasitic nematodes. PMID:26232118
De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods. PMID:26228684
Cell Wall Remodeling Enzymes Modulate Fungal Cell Wall Elasticity and Osmotic Stress Resistance. PMID:26220968
Challenges and perspectives in combinatorial assembly of novel exopolysaccharide biosynthesis pathways. PMID:26217319
The protein BpsB is a poly-β-1,6-N-acetyl-D-glucosamine deacetylase required for biofilm formation in Bordetella bronchiseptica. PMID:26203190
Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation. PMID:26192331
An Enzymatically Active β-1,3-Glucanase from Ash Pollen with Allergenic Properties: A Particular Member in the Oleaceae Family. PMID:26177095
Functional role of R462 in the degradation of hyaluronan catalyzed by hyaluronate lyase from Streptococcus pneumoniae. PMID:26169310
A Genome-Wide Association Study for Culm Cellulose Content in Barley Reveals Candidate Genes Co-Expressed with Members of the CELLULOSE SYNTHASE A Gene Family. PMID:26154104
In silico ligand binding studies of cyanogenic β-glucosidase, dhurrinase-2 from Sorghum bicolor. PMID:26139075
Structural Features of a Bacteroidetes-Affiliated Cellulase Linked with a Polysaccharide Utilization Locus. PMID:26133573
Cloning, Purification and Characterization of Acetyl Xylane Esterase from Anoxybacillus flavithermus DSM 2641(T) with Activity on Low Molecular-Weight Acetates. PMID:26126589
Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation. PMID:26111162
An Interspecies Comparative Analysis of the Predicted Secretomes of the Necrotrophic Plant Pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PMID:26107498
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. PMID:26084502
Microbial bioinformatics for food safety and production. PMID:26082168
MetaPathways v2.5: quantitative functional, taxonomic and usability improvements. PMID:26076725
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. PMID:26076695
Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes. PMID:26076650
Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies. PMID:26074894
Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes. PMID:26070087
Antifungal activity of berberine hydrochloride and palmatine hydrochloride against Microsporum canis -induced dermatitis in rabbits and underlying mechanism. PMID:26054937
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre. PMID:26042105
A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil. PMID:26040993
A molecular description of cellulose biosynthesis. PMID:26034894
Extracellular matrix-associated proteins form an integral and dynamic system during Pseudomonas aeruginosa biofilm development. PMID:26029669
Chitotriosidase Expression during Monocyte-Derived Dendritic Cells Differentiation and Maturation. PMID:26026464
Structural-Functional Analysis Reveals a Specific Domain Organization in Family GH20 Hexosaminidases. PMID:26024355
Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. PMID:26020016
Contribution of a family 1 carbohydrate-binding module in thermostable glycoside hydrolase 10 xylanase from Talaromyces cellulolyticus toward synergistic enzymatic hydrolysis of lignocellulose. PMID:26000036
Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses. PMID:25999407
Characterization of a xylanase-producing Cellvibrio mixtus strain J3-8 and its genome analysis. PMID:25994900
Comparative analysis of plant carbohydrate active enZymes and their role in xylogenesis. PMID:25994181
Clostridium clariflavum: Key Cellulosome Players Are Revealed by Proteomic Analysis. PMID:25991683
The physico-chemical properties of dietary fibre determine metabolic responses, short-chain Fatty Acid profiles and gut microbiota composition in rats fed low- and high-fat diets. PMID:25973610
Implementation of linked data in the life sciences at BioHackathon 2011. PMID:25973165
A new generation of versatile chromogenic substrates for high-throughput analysis of biomass-degrading enzymes. PMID:25969695
Classification of fungal and bacterial lytic polysaccharide monooxygenases. PMID:25956378
Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests. PMID:25954263
Quantitative Real-Time PCR Analysis of YKL-40 and Its Comparison with Mammalian Chitinase mRNAs in Normal Human Tissues Using a Single Standard DNA. PMID:25941933
Investigation of Carbohydrate Recognition via Computer Simulation. PMID:25927900
The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei. PMID:25925231
Identification of genes involved in biosynthesis of mannan polysaccharides in Dendrobium officinale by RNA-seq analysis. PMID:25924595
Forest harvesting reduces the soil metagenomic potential for biomass decomposition. PMID:25909978
A Neutral Thermostable β-1,4-Glucanase from Humicola insolens Y1 with Potential for Applications in Various Industries. PMID:25909505
Metagenomic analysis of the Rhinopithecus bieti fecal microbiome reveals a broad diversity of bacterial and glycoside hydrolase profiles related to lignocellulose degradation. PMID:25887697
Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut. PMID:25887661
The Alternaria genomes database: a comprehensive resource for a fungal genus comprised of saprophytes, plant pathogens, and allergenic species. PMID:25887485
Expression of the Thermobifida fusca xylanase Xyn11A in Pichia pastoris and its characterization. PMID:25887328
MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics. PMID:25880302
Overexpression of the carbohydrate binding module of strawberry expansin2 in Arabidopsis thaliana modifies plant growth and cell wall metabolism. PMID:25837738
GRYFUN: a web application for GO term annotation visualization and analysis in protein sets. PMID:25794277
The recruitment of AMP-activated protein kinase to glycogen is regulated by autophosphorylation. PMID:25792737
Mo-CBP3, an antifungal chitin-binding protein from Moringa oleifera seeds, is a member of the 2S albumin family. PMID:25789746
A combined cell-consortium approach for lignocellulose degradation by specialized Lactobacillus plantarum cells. PMID:25788977
In vitro gastrointestinal digestion study of two wheat cultivars and evaluation of xylanase supplementation. PMID:25785187
The carbon starvation response of the ectomycorrhizal fungus Paxillus involutus. PMID:25778509
Endomembrane proteomics reveals putative enzymes involved in cell wall metabolism in wheat grain outer layers. PMID:25769308
Extracellular production of a novel endo-β-agarase AgaA from Pseudomonas vesicularis MA103 that cleaves agarose into neoagarotetraose and neoagarohexaose. PMID:25768342
Cloning, purification, crystallization and preliminary X-ray studies of a carbohydrate-binding module from family 64 (StX). PMID:25760706
Proteome exploration to provide a resource for the investigation of Ganoderma lucidum. PMID:25756518
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support. PMID:25754864
Active site and laminarin binding in glycoside hydrolase family 55. PMID:25752603
The importance of fungi and mycology for addressing major global challenges*. PMID:25734035
Draft Genome Sequence of Talaromyces cellulolyticus Strain Y-94, a Source of Lignocellulosic Biomass-Degrading Enzymes. PMID:25720677
Discrete and structurally unique proteins (tāpirins) mediate attachment of extremely thermophilic Caldicellulosiruptor species to cellulose. PMID:25720489
Family 46 Carbohydrate-binding Modules Contribute to the Enzymatic Hydrolysis of Xyloglucan and β-1,3-1,4-Glucans through Distinct Mechanisms. PMID:25713075
Functional Characterization and Low-Resolution Structure of an Endoglucanase Cel45A from the Filamentous Fungus Neurospora crassa OR74A: Thermostable Enzyme with High Activity Toward Lichenan and β-Glucan. PMID:25711741
Characterization of an exo-inulinase from Arthrobacter: a novel NaCl-tolerant exo-inulinase with high molecular mass. PMID:25695343
A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production. PMID:25691917
Properties of an alkali-thermo stable xylanase from Geobacillus thermodenitrificans A333 and applicability in xylooligosaccharides generation. PMID:25687227
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. PMID:25665577
Role of pectinolytic enzymes identified in Clostridium thermocellum cellulosome. PMID:25658912
A new versatile microarray-based method for high throughput screening of carbohydrate-active enzymes. PMID:25657012
Signatures of adaptation to plant parasitism in nematode genomes. PMID:25656361
The three-dimensional structure of the cellobiohydrolase Cel7A from Aspergillus fumigatus at 1.5 Å resolution. PMID:25615982
Three-dimensional structure of a variant `Termamyl-like' Geobacillus stearothermophilus α-amylase at 1.9 Å resolution. PMID:25615972
The N-Glycan cluster from Xanthomonas campestris pv. campestris: a toolbox for sequential plant N-glycan processing. PMID:25586188
Characterization of Sphingomonas sp. JB13 exo-inulinase: a novel detergent-, salt-, and protease-tolerant exo-inulinase. PMID:25575614
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease. PMID:25539722
Proteomic Analysis of Pig (Sus scrofa) Olfactory Soluble Proteome Reveals O-Linked-N-Acetylglucosaminylation of Secreted Odorant-Binding Proteins. PMID:25538681
Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. PMID:25534026
Genomic potential for polysaccharide deconstruction in bacteria. PMID:25527556
The secreted proteins of Achlya hypogyna and Thraustotheca clavata identify the ancestral oomycete secretome and reveal gene acquisitions by horizontal gene transfer. PMID:25527045
Investigation of protein secretion and secretion stress in Ashbya gossypii. PMID:25523110
Metatranscriptomic analyses of plant cell wall polysaccharide degradation by microorganisms in the cow rumen. PMID:25501482
Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization. PMID:25478833
Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis. PMID:25477200
Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood. PMID:25474575
Analysis of the role of O-glycosylation in GH51 α-L-arabinofuranosidase from Pleurotus ostreatus. PMID:25471797
Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature. PMID:25461894
Potential of fecal microbiota for early-stage detection of colorectal cancer. PMID:25432777
Genomics review of holocellulose deconstruction by aspergilli. PMID:25428936
Antibacterial gene transfer across the tree of life. PMID:25422936
Characterization of AlgMsp, an alginate lyase from Microbulbifer sp. 6532A. PMID:25409178
Accumulation of novel glycolipids and ornithine lipids in Mesorhizobium loti under phosphate deprivation. PMID:25404698
High phylogenetic diversity of glycosyl hydrolase family 10 and 11 xylanases in the sediment of Lake Dabusu in China. PMID:25392912
A novel member of glycoside hydrolase family 30 subfamily 8 with altered substrate specificity. PMID:25372685
Bioproduction of chitooligosaccharides: present and perspectives. PMID:25353253
Stereochemical course of hydrolytic reaction catalyzed by alpha-galactosidase from cold adaptable marine bacterium of genus Pseudoalteromonas. PMID:25353020
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. PMID:25351875
A sensitive gel-based method combining distinct cyclophellitol-based probes for the identification of acid/base residues in human retaining β-glucosidases. PMID:25344605
Identification and characterization of core cellulolytic enzymes from Talaromyces cellulolyticus (formerly Acremonium cellulolyticus) critical for hydrolysis of lignocellulosic biomass. PMID:25342974
Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders. PMID:25342967
Mycobacterium hassiacum recovers from nitrogen starvation with up-regulation of a novel glucosylglycerate hydrolase and depletion of the accumulated glucosylglycerate. PMID:25341489
O-GlcNAcase: promiscuous hexosaminidase or key regulator of O-GlcNAc signaling? PMID:25336650
The α1,6-fucosyltransferase gene (fut8) from the Sf9 lepidopteran insect cell line: insights into fut8 evolution. PMID:25333276
Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis. PMID:25330991
A genome wide association scan for (1,3;1,4)-β-glucan content in the grain of contemporary 2-row Spring and Winter barleys. PMID:25326272
Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance. PMID:25324897
Enabling large-scale next-generation sequence assembly with Blacklight. PMID:25294974
Establishment of a quantitative PCR system for discriminating chitinase-like proteins: catalytically inactive breast regression protein-39 and Ym1 are constitutive genes in mouse lung. PMID:25294623
Residue Leu940 has a crucial role in the linkage and reaction specificity of the glucansucrase GTF180 of the probiotic bacterium Lactobacillus reuteri 180. PMID:25288798
Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase. PMID:25262226
Overexpression, purification and characterisation of homologous α-L-arabinofuranosidase and endo-1,4-β-D-glucanase in Aspergillus vadensis. PMID:25260653
Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data. PMID:25258679
Heterologous complementation of a pyrF deletion in Caldicellulosiruptor hydrothermalis generates a new host for the analysis of biomass deconstruction. PMID:25254074
Effects of active site cleft residues on oligosaccharide binding, hydrolysis, and glycosynthase activities of rice BGlu1 and its mutants. PMID:25252199
The characterization of the endoglucanase Cel12A from Gloeophyllum trabeum reveals an enzyme highly active on β-glucan. PMID:25251390
Complementary symbiont contributions to plant decomposition in a fungus-farming termite. PMID:25246537
Ultrastructure and composition of the Nannochloropsis gaditana cell wall. PMID:25239976
Genomic analyses and transcriptional profiles of the glycoside hydrolase family 18 genes of the entomopathogenic fungus Metarhizium anisopliae. PMID:25232743
Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts. PMID:25232357
African relapsing Fever borreliae genomospecies revealed by comparative genomics. PMID:25229054
Characterization of five β-glycoside hydrolases from Cellulomonas fimi ATCC 484. PMID:25225266
Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family. PMID:25217478
Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome. PMID:25214042
Unravelling the multiple functions of the architecturally intricate Streptococcus pneumoniae β-galactosidase, BgaA. PMID:25210925
Molecular insight into the role of the N-terminal extension in the maturation, substrate recognition, and catalysis of a bacterial alginate lyase from polysaccharide lyase family 18. PMID:25210041
The complete genome sequence of Clostridium indolis DSM 755(T.). PMID:25197485
Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil. PMID:25197431
Structural analysis of the GH43 enzyme Xsa43E from Butyrivibrio proteoclasticus. PMID:25195890
Bifidobacterium bifidum as an example of a specialized human gut commensal. PMID:25191315
Molecular characterization of a highly-active thermophilic β-glucosidase from Neosartorya fischeri P1 and its application in the hydrolysis of soybean isoflavone glycosides. PMID:25188254
The sweet tooth of bacteria: common themes in bacterial glycoconjugates. PMID:25184559
Biochemical and structural characterization of a thermostable β-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis. PMID:25173693
Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites. PMID:25171437
Expression and functional analysis of a glycoside hydrolase family 45 endoglucanase from Rhizopus stolonifer. PMID:25164957
Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases. PMID:25161697
Extracellular secretion of noncatalytic plant cell wall-binding proteins by the cellulolytic thermophile Caldicellulosiruptor bescii. PMID:25157080
Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates. PMID:25156449
Characterization of a GHF45 cellulase, AkEG21, from the common sea hare Aplysia kurodai. PMID:25147784
High potential source for biomass degradation enzyme discovery and environmental aspects revealed through metagenomics of Indian buffalo rumen. PMID:25136572
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. PMID:25136443
Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes. PMID:25136124
PlantCAZyme: a database for plant carbohydrate-active enzymes. PMID:25125445
Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations. PMID:25118239
Elucidation of primary metabolic pathways in Aspergillus species: orphaned research in characterizing orphan genes. PMID:25114096
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. PMID:25108363
Transcriptome analysis of the entomopathogenic oomycete Lagenidium giganteum reveals putative virulence factors. PMID:25107973
Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability. PMID:25101643
Conformational analysis of the Streptococcus pneumoniae hyaluronate lyase and characterization of its hyaluronan-specific carbohydrate-binding module. PMID:25100731
Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum. PMID:25086049
Paenibacillus larvae chitin-degrading protein PlCBP49 is a key virulence factor in American Foulbrood of honey bees. PMID:25080221
The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties. PMID:25073817
Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase. PMID:25069018
Genomes and transcriptomes of partners in plant-fungal-interactions between canola (Brassica napus) and two Leptosphaeria species. PMID:25068644
Enzymatic synthesis using glycoside phosphorylases. PMID:25060838
Homogalacturonan-modifying enzymes: structure, expression, and roles in plants. PMID:25056773
Chemical tools to explore nutrient-driven O-GlcNAc cycling. PMID:25039763
A novel agarolytic β-galactosidase acts on agarooligosaccharides for complete hydrolysis of agarose into monomers. PMID:25038102
Analysis of the protein domain and domain architecture content in fungi and its application in the search of new antifungal targets. PMID:25033262
Plant surface cues prime Ustilago maydis for biotrophic development. PMID:25033195
The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes. PMID:25026064
Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium. PMID:25015893
Metatranscriptomic analysis of arctic peat soil microbiota. PMID:25015892
Structure of pneumococcal peptidoglycan hydrolase LytB reveals insights into the bacterial cell wall remodeling and pathogenesis. PMID:25002590
Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics. PMID:24998381
Crystal structure of the Chlamydomonas starch debranching enzyme isoamylase ISA1 reveals insights into the mechanism of branch trimming and complex assembly. PMID:24993830
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains. PMID:24992679
Molecular Dynamics and Metadynamics Simulations of the Cellulase Cel48F. PMID:24963399
Substrate specificity of cytoplasmic N-glycosyltransferase. PMID:24962585
Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia. PMID:24955113
An Aspergillus nidulans β-mannanase with high transglycosylation capacity revealed through comparative studies within glycosidase family 5. PMID:24950755
Family 1 carbohydrate binding-modules enhance saccharification rates. PMID:24949270
Structural studies of the spinosyn forosaminyltransferase, SpnP. PMID:24945604
Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of glycoside hydrolase. PMID:24938123
Integration of bacterial lytic polysaccharide monooxygenases into designer cellulosomes promotes enhanced cellulose degradation. PMID:24927597
Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community. PMID:24924356
Identification of Novel Peptidyl Serine α-Galactosyltransferase Gene Family in Plants. PMID:24914209
Identification and characterization of a halotolerant, cold-active marine endo-β-1,4-glucanase by using functional metagenomics of seaweed-associated microbiota. PMID:24907332
Bisdionin C-a rationally designed, submicromolar inhibitor of family 18 chitinases. PMID:24900325
Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community. PMID:24886150
A network-based approach to identify substrate classes of bacterial glycosyltransferases. PMID:24885406
Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae. PMID:24842809
Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity to degrade lignocellulose. PMID:24837391
Improved soluble expression of the gene encoding amylolytic enzyme Amo45 by fusion with the mobile-loop-region of co-chaperonin GroES in Escherichia coli. PMID:24829536
Structural and electronic snapshots during the transition from a Cu(II) to Cu(I) metal center of a lytic polysaccharide monooxygenase by X-ray photoreduction. PMID:24828494
Overexpression and characterization of a novel thermostable β-agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T). PMID:24824021
Potent and specific inhibition of glycosidases by small artificial binding proteins (affitins). PMID:24823716
Insight into the role of substrate-binding residues in conferring substrate specificity for the multifunctional polysaccharide lyase Smlt1473. PMID:24808176
De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae. PMID:24802510
Recombinant expression and characterization of the cytoplasmic rice β-glucosidase Os1BGlu4. PMID:24802508
Phyllotreta striolata flea beetles use host plant defense compounds to create their own glucosinolate-myrosinase system. PMID:24799680
Phosphoglucan-bound structure of starch phosphatase Starch Excess4 reveals the mechanism for C6 specificity. PMID:24799671
The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger. PMID:24792495
Inhibition of fungal plant pathogens by synergistic action of chito-oligosaccharides and commercially available fungicides. PMID:24770723
Gut microbiomes of Indian children of varying nutritional status. PMID:24763225
Expression of leukocyte adhesion-related glycosyltransferase genes in acute coronary syndrome patients. PMID:24748045
Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei. PMID:24746234
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. PMID:24742328
Newly derived GH43 gene from compost metagenome showing dual xylanase and cellulase activities. PMID:24737296
Molecular evolution of glycoside hydrolase genes in the Western corn rootworm (Diabrotica virgifera virgifera). PMID:24718603
Whole genome and global gene expression analyses of the model mushroom Flammulina velutipes reveal a high capacity for lignocellulose degradation. PMID:24714189
Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes. PMID:24710093
Cloning, expression and characterization of a novel thermophilic polygalacturonase from Caldicellulosiruptor bescii DSM 6725. PMID:24705464
Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP. PMID:24704788
Preliminary crystallographic analysis of a double mutant of the acetyl xylo-oligosaccharide esterase Axe2 in its dimeric form. PMID:24699743
Galactosyltransferases from Arabidopsis thaliana in the biosynthesis of type II arabinogalactan: molecular interaction enhances enzyme activity. PMID:24693939
A structural overview of GH61 proteins - fungal cellulose degrading polysaccharide monooxygenases. PMID:24688660
Cellulose degradation by oxidative enzymes. PMID:24688656
Emerging role of N- and C-terminal interactions in stabilizing (β/α)8 fold with special emphasis on Family 10 xylanases. PMID:24688655
Structural and mechanistic fundamentals for designing of cellulases. PMID:24688647
Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH11 xylanase. PMID:24688637
Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. PMID:24682155
POLYGALACTURONASE INVOLVED IN EXPANSION1 functions in cell elongation and flower development in Arabidopsis. PMID:24681615
Structural insights into the transport of small molecules across membranes. PMID:24681594
Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shōchū Residue. PMID:24675866
Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud. PMID:24675859
Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. PMID:24672531
Identification and characterization of a novel alkaline α‑amylase Amy703 belonging to a new clade from Bacillus pseudofirmus. PMID:24659177
Extensive microbial and functional diversity within the chicken cecal microbiome. PMID:24657972
Draft Genome Sequence of Paenibacillus pini JCM 16418T, Isolated from the Rhizosphere of Pine Tree. PMID:24652984
Similarities and differences in the biochemical and enzymological properties of the four isomaltases from Saccharomyces cerevisiae. PMID:24649402
1,2-β-Oligoglucan phosphorylase from Listeria innocua. PMID:24647662
A computational and experimental study of O-glycosylation. Catalysis by human UDP-GalNAc polypeptide:GalNAc transferase-T2. PMID:24643241
2-Acylamido analogues of N-acetylglucosamine prime formation of chitin oligosaccharides by yeast chitin synthase 2. PMID:24619411
Crystallographic structure of ChitA, a glycoside hydrolase family 19, plant class IV chitinase from Zea mays. PMID:24616181
Structural elucidation of the cyclization mechanism of α-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase. PMID:24616103
High secretory production of an alkaliphilic actinomycete xylanase and functional roles of some important residues. PMID:24615663
The wheat grain contains pectic domains exhibiting specific spatial and development-associated distribution. PMID:24586916
Structural and biochemical analyses of glycoside hydrolase family 26 β-mannanase from a symbiotic protist of the termite Reticulitermes speratus. PMID:24570006
Fungal plant cell wall-degrading enzyme database: a platform for comparative and evolutionary genomics in fungi and Oomycetes. PMID:24564786
Cellulases without carbohydrate-binding modules in high consistency ethanol production process. PMID:24559384
Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse. PMID:24558413
Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community. PMID:24558248
A bifunctional glycosyltransferase from Agrobacterium tumefaciens synthesizes monoglucosyl and glucuronosyl diacylglycerol under phosphate deprivation. PMID:24558041
Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite. PMID:24526645
Comparative genomics of unintrogressed Campylobacter coli clades 2 and 3. PMID:24524824
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. PMID:24522263
Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803. PMID:24522261
Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi. PMID:24507587
Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems. PMID:24504696
Complementation of essential yeast GPI mannosyltransferase mutations suggests a novel specificity for certain Trypanosoma and Plasmodium PigB proteins. PMID:24489949
Close relationship of a novel Flavobacteriaceae α-amylase with archaeal α-amylases and good potentials for industrial applications. PMID:24485248
Aberrant phenotype and transcriptome expression during fiber cell wall thickening caused by the mutation of the Im gene in immature fiber (im) mutant in Gossypium hirsutum L. PMID:24483163
Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T. PMID:24482522
Crystal structure and characterization of the glycoside hydrolase family 62 α-L-arabinofuranosidase from Streptomyces coelicolor. PMID:24482228
Structure of a PL17 family alginate lyase demonstrates functional similarities among exotype depolymerases. PMID:24478312
Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. PMID:24477196
Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production. PMID:24472375
2-O-α-D-glucosylglycerol phosphorylase from Bacillus selenitireducens MLS10 possessing hydrolytic activity on β-D-glucose 1-phosphate. PMID:24466148
Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393. PMID:24463968
Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite. PMID:24459258
Cloning and molecular modelling of pectin degrading glycosyl hydrolase of family 28 from soil metagenomic library. PMID:24452715
Molecular and functional characterization of an invertase secreted by Ashbya gossypii. PMID:24452331
Characterization of all family-9 glycoside hydrolases synthesized by the cellulosome-producing bacterium Clostridium cellulolyticum. PMID:24451379
Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader. PMID:24428220
Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes. PMID:24423166
Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. PMID:24422981
Three-dimensional structure of a Streptomyces sviceus GNAT acetyltransferase with similarity to the C-terminal domain of the human GH84 O-GlcNAcase. PMID:24419391
An insight into the transcriptome of the digestive tract of the bloodsucking bug, Rhodnius prolixus. PMID:24416461
Prediction of detailed enzyme functions and identification of specificity determining residues by random forests. PMID:24416252
The Fusarium oxysporum gnt2, encoding a putative N-acetylglucosamine transferase, is involved in cell wall architecture and virulence. PMID:24416097
A novel unsaturated β-glucuronyl hydrolase involved in ulvan degradation unveils the versatility of stereochemistry requirements in family GH105. PMID:24407291
Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin. PMID:24403065
Cell-free translation of biofuel enzymes. PMID:24395410
Study of GOLPH3: a potential stress-inducible protein from Golgi apparatus. PMID:24395131
First structural insights into α-L-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. PMID:24394409
Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome. PMID:24391873
A multi-omic analysis of an Enterococcus faecium mutant reveals specific genetic mutations and dramatic changes in mRNA and protein expression. PMID:24373636
The fungal symbiont of Acromyrmex leaf-cutting ants expresses the full spectrum of genes to degrade cellulose and other plant cell wall polysaccharides. PMID:24373541
Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function. PMID:24366681
Flavobacterium johnsoniae chitinase ChiA is required for chitin utilization and is secreted by the type IX secretion system. PMID:24363341
Discovery and characterization of a new family of lytic polysaccharide monooxygenases. PMID:24362702
The β-glucanase ZgLamA from Zobellia galactanivorans evolved a bent active site adapted for efficient degradation of algal laminarin. PMID:24337571
Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks. PMID:24330590
Enzymatic characterization of a glycoside hydrolase family 5 subfamily 7 (GH5_7) mannanase from Arabidopsis thaliana. PMID:24327260
A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides. PMID:24324265
Structural basis for 2'-phosphate incorporation into glycogen by glycogen synthase. PMID:24324135
Overexpression, crystallization and preliminary X-ray crystallographic analysis of glucuronoxylan xylanohydrolase (Xyn30A) from Clostridium thermocellum. PMID:24316849
Structure of Acidothermus cellulolyticus family 74 glycoside hydrolase at 1.82 Å resolution. PMID:24316824
Structure-function features of a Mycoplasma glycolipid synthase derived from structural data integration, molecular simulations, and mutational analysis. PMID:24312618
Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes. PMID:24312107
Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle. PMID:24304644
Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation. PMID:24297170
Directed evolution of GH43 β-xylosidase XylBH43 thermal stability and L186 saturation mutagenesis. PMID:24292973
Glycophenotyping of osteoarthritic cartilage and chondrocytes by RT-qPCR, mass spectrometry, histochemistry with plant/human lectins and lectin localization with a glycoprotein. PMID:24289744
Molecular engineering of fungal GH5 and GH26 beta-(1,4)-mannanases toward improvement of enzyme activity. PMID:24278180
Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach. PMID:24278158
Molecular analysis of an alternative N-glycosylation machinery by functional transfer from Actinobacillus pleuropneumoniae to Escherichia coli. PMID:24275653
The carbohydrate-active enzymes database (CAZy) in 2013. PMID:24270786
A polysaccharide lyase from Stenotrophomonas maltophilia with a unique, pH-regulated substrate specificity. PMID:24257754
Protein A-mouse acidic mammalian chitinase-V5-His expressed in periplasmic space of Escherichia coli possesses chitinase functions comparable to CHO-expressed protein. PMID:24244337
UniCarbKB: building a knowledge platform for glycoproteomics. PMID:24234447
Identification of the gene for β-fructofuranosidase from Ceratocystis moniliformis CMW 10134 and characterization of the enzyme expressed in Saccharomyces cerevisiae. PMID:24225070
A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations. PMID:24224966
Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows. PMID:24223817
Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice. PMID:24223786
Evidence that GH115 α-glucuronidase activity, which is required to degrade plant biomass, is dependent on conformational flexibility. PMID:24214982
Adaptation of intertidal biofilm communities is driven by metal ion and oxidative stresses. PMID:24212283
Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses. PMID:24205054
Combinatorial engineering of dextransucrase specificity. PMID:24204991
Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent. PMID:24204617
Enzymatic synthesis of apigenin glucosides by glucosyltransferase (YjiC) from Bacillus licheniformis DSM 13. PMID:24170092
Characterization and transcript profiling of the pectin methylesterase (PME) and pectin methylesterase inhibitor (PMEI) gene families in flax (Linum usitatissimum). PMID:24168262
Truncation of a mannanase from Trichoderma harzianum improves its enzymatic properties and expression efficiency in Trichoderma reesei. PMID:24162722
A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves. PMID:24160319
Identification and characterization of a novel trehalose synthase gene derived from saline-alkali soil metagenomes. PMID:24146994
Annotation extension through protein family annotation coherence metrics. PMID:24130572
BcsA and BcsB form the catalytically active core of bacterial cellulose synthase sufficient for in vitro cellulose synthesis. PMID:24127606
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. PMID:24124466
Immobilization of thermostable β-galactosidase on epoxy support and its use for lactose hydrolysis and galactooligosaccharides biosynthesis. PMID:24122101
Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis. PMID:24121328
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota. PMID:24108330
Seasonally variable intestinal metagenomes of the red palm weevil (Rhynchophorus ferrugineus). PMID:24102776
GALACTURONOSYLTRANSFERASE-LIKE5 is involved in the production of Arabidopsis seed coat mucilage. PMID:24092888
Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase. PMID:24089528
Structure of a bacterial putative acetyltransferase defines the fold of the human O-GlcNAcase C-terminal domain. PMID:24088714
Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism. PMID:24086761
Cooperative degradation of chitin by extracellular and cell surface-expressed chitinases from Paenibacillus sp. strain FPU-7. PMID:24077704
Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. PMID:24074284
Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation. PMID:24069150
Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. PMID:24069019
Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger. PMID:24060058
Role of glycoside phosphorylases in mannose foraging by human gut bacteria. PMID:24043624
Identification of a novel fungus, Leptosphaerulina chartarum SJTU59 and characterization of its xylanolytic enzymes. PMID:24040044
Recombinant Aspergillus β-galactosidases as a robust glycomic and biotechnological tool. PMID:24037406
Biochemical and kinetic characterisation of a novel xylooligosaccharide-upregulated GH43 β-d-xylosidase/α-l-arabinofuranosidase (BXA43) from the probiotic Bifidobacterium animalis subsp. lactis BB-12. PMID:24025736
Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle. PMID:24023907
Gut microbiota from twins discordant for obesity modulate metabolism in mice. PMID:24009397
The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides. PMID:23995932
Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research. PMID:23986771
The first identification of carbohydrate binding modules specific to chitosan. PMID:23986450
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PMID:23976882
Insertion of endocellulase catalytic domains into thermostable consensus ankyrin scaffolds: effects on stability and cellulolytic activity. PMID:23974146
Cloning and biochemical characterization of an endo-1,4-β-mannanase from the coffee berry borer Hypothenemus hampei. PMID:23965285
Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose. PMID:23959893
A bacterial glucanotransferase can replace the complex maltose metabolism required for starch to sucrose conversion in leaves at night. PMID:23950181
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity. PMID:23949661
Are cellulosome scaffolding protein CipC and CBM3-containing protein HycP, involved in adherence of Clostridium cellulolyticum to cellulose? PMID:23935995
Identification of the galactosyltransferase of Cryptococcus neoformans involved in the biosynthesis of basidiomycete-type glycosylinositolphosphoceramide. PMID:23926231
Biochemical characterization of a polysialyltransferase from Mannheimia haemolytica A2 and comparison to other bacterial polysialyltransferases. PMID:23922842
Substrate recognition and hydrolysis by a family 50 exo-β-agarase, Aga50D, from the marine bacterium Saccharophagus degradans. PMID:23921382
The production and characterization of a new active lipase from Acremonium alcalophilum using a plant bioreactor. PMID:23915965
Calculation of substrate binding affinities for a bacterial GH78 rhamnosidase through molecular dynamics simulations. PMID:23914137
Crystallization and preliminary X-ray crystallographic analysis of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040. PMID:23908050
The binding of zinc ions to Emericella nidulans endo-β-1,4-galactanase is essential for crystal formation. PMID:23908026
Crystal structure of α-1,4-glucan lyase, a unique glycoside hydrolase family member with a novel catalytic mechanism. PMID:23902768
Synthesis of α-glucan in mycobacteria involves a hetero-octameric complex of trehalose synthase TreS and Maltokinase Pep2. PMID:23901909
Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass. PMID:23894306
Structure of the Streptococcus pneumoniae surface protein and adhesin PfbA. PMID:23894284
Structure of allergens and structure based epitope predictions. PMID:23891546
Identification of an endo-1,4-beta-xylanase of Ustilago maydis. PMID:23889751
Selecting β-glucosidases to support cellulases in cellulose saccharification. PMID:23883540
Product inhibition of cellulases studied with 14C-labeled cellulose substrates. PMID:23883520
Multifunctional fructans and raffinose family oligosaccharides. PMID:23882273
β-Glucosidase 2 (GBA2) activity and imino sugar pharmacology. PMID:23880767
Metagenomic insights into metabolic capacities of the gut microbiota in a fungus-cultivating termite (Odontotermes yunnanensis). PMID:23874908
Structural basis of the novel S. pneumoniae virulence factor, GHIP, a glycosyl hydrolase 25 participating in host-cell invasion. PMID:23874703
The carbohydrate metabolism signature of lactococcus lactis strain A12 reveals its sourdough ecosystem origin. PMID:23872564
Differential impacts of juvenile hormone, soldier head extract and alternate caste phenotypes on host and symbiont transcriptome composition in the gut of the termite Reticulitermes flavipes. PMID:23870282
Characterization of free exopolysaccharides secreted by Mycoplasma mycoides subsp. mycoides. PMID:23869216
Systems approaches to computational modeling of the oral microbiome. PMID:23847548
Draft Genome Sequence of the Lignocellulose Decomposer Thermobifida fusca Strain TM51. PMID:23846276
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges. PMID:23842652
Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation. PMID:23832589
Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates. PMID:23819686
Draft Genome Sequence of the Ascomycete Phaeoacremonium aleophilum Strain UCR-PA7, a Causal Agent of the Esca Disease Complex in Grapevines. PMID:23814032
Establishment of a simple Lactobacillus plantarum cell consortium for cellulase-xylanase synergistic interactions. PMID:23811500
α-Amylase: an enzyme specificity found in various families of glycoside hydrolases. PMID:23807207
A one-pot enzymatic approach to the O-fluoroglucoside of N-methylanthranilate. PMID:23806835
Xylanase Superproducer: Genome Sequence of a Compost-Loving Thermophilic Fungus, Thermomyces lanuginosus Strain SSBP. PMID:23788551
Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PMID:23785293
Comparative characterization of two marine alginate lyases from Zobellia galactanivorans reveals distinct modes of action and exquisite adaptation to their natural substrate. PMID:23782694
Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity. PMID:23782552
Genome of the red alga Porphyridium purpureum. PMID:23770768
Draft Genome Sequence of Neofusicoccum parvum Isolate UCR-NP2, a Fungal Vascular Pathogen Associated with Grapevine Cankers. PMID:23766404
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. PMID:23766336
Discovery of diversity in xylan biosynthetic genes by transcriptional profiling of a heteroxylan containing mucilaginous tissue. PMID:23761806
O-glycosylation as a novel control mechanism of peptidoglycan hydrolase activity. PMID:23760506
A high molecular-mass Anoxybacillus sp. SK3-4 amylopullulanase: characterization and its relationship in carbohydrate utilization. PMID:23759984
Targeted identification of glycosylated proteins in the gastric pathogen Helicobacter pylori (Hp). PMID:23754784
Comparative analysis of glycoside hydrolases activities from phylogenetically diverse marine bacteria of the genus Arenibacter. PMID:23752354
Structure, dynamics, and specificity of endoglucanase D from Clostridium cellulovorans. PMID:23751954
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome. PMID:23748443
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. PMID:23748339
Purification, cloning, characterization and essential amino acid residues analysis of a new ι-carrageenase from Cellulophaga sp. QY3. PMID:23741363
Expression and efficient secretion of a functional chitinase from Chromobacterium violaceum in Escherichia coli. PMID:23725035
Draft Genome Sequence of the Grapevine Dieback Fungus Eutypa lata UCR-EL1. PMID:23723393
Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris. PMID:23722852
A refined palate: bacterial consumption of host glycans in the gut. PMID:23720460
Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria. PMID:23716574
The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. PMID:23709508
Draft Genome Sequence of Botrytis cinerea BcDW1, Inoculum for Noble Rot of Grape Berries. PMID:23704180
Genomic and expression analysis of the flax (Linum usitatissimum) family of glycosyl hydrolase 35 genes. PMID:23701735
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer. PMID:23698014
Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis. PMID:23688303
Molecular basis for the recognition of long-chain substrates by plant α-glucosidases. PMID:23687304
An efficient proteomic approach to analyze agriculture crop biomass. PMID:23681363
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. PMID:23673639
The EGF repeat-specific O-GlcNAc-transferase Eogt interacts with notch signaling and pyrimidine metabolism pathways in Drosophila. PMID:23671640
Recombinant β-1,3-1,4-glucanase from Theobroma cacao impairs Moniliophthora perniciosa mycelial growth. PMID:23666150
Temporal analysis of the magnaporthe oryzae proteome during conidial germination and cyclic AMP (cAMP)-mediated appressorium formation. PMID:23665591
Cloning and characterization of the glycoside hydrolases that remove xylosyl groups from 7-β-xylosyl-10-deacetyltaxol and its analogues. PMID:23665501
Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04. PMID:23663691
Crystal structures of the catalytic domain of a novel glycohydrolase family 23 chitinase from Ralstonia sp. A-471 reveals a unique arrangement of the catalytic residues for inverting chitin hydrolysis. PMID:23658014
Structure and regulation of the cellulose degradome in Clostridium cellulolyticum. PMID:23657055
Recombinant bacterial amylopullulanases: developments and perspectives. PMID:23645215
Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina. PMID:23645193
Cloning, expression and characterization of an ethanol tolerant GH3 β-glucosidase from Myceliophthora thermophila. PMID:23638383
Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl. PMID:23631913
High expression of a neutral endo-β-glucanase gene from Humicola insolens in Trichoderma reesei. PMID:23619969
Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. PMID:23617724
Conserved glycolipid termini in capsular polysaccharides synthesized by ATP-binding cassette transporter-dependent pathways in Gram-negative pathogens. PMID:23610430
Flux through trehalose synthase flows from trehalose to the alpha anomer of maltose in mycobacteria. PMID:23601637
Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. PMID:23599271
Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. PMID:23596448
Genomic and enzymatic results show Bacillus cellulosilyticus uses a novel set of LPXTA carbohydrases to hydrolyze polysaccharides. PMID:23593409
Purification, gene cloning, and biochemical characterization of a β-glucosidase capable of hydrolyzing sesaminol triglucoside from Paenibacillus sp. KB0549. PMID:23593237
Tertiary model of a plant cellulose synthase. PMID:23592721
Identification and prioritization of novel uncharacterized peptidases for biochemical characterization. PMID:23584835
Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. PMID:23584789
From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis. PMID:23580647
Structure-function analysis of a broad specificity Populus trichocarpa endo-β-glucanase reveals an evolutionary link between bacterial licheninases and plant XTH gene products. PMID:23572521
Bacillus subtilis biofilm induction by plant polysaccharides. PMID:23569226
Gene cloning, expression and characterization of a novel xylanase from the marine bacterium, Glaciecola mesophila KMM241. PMID:23567318
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. PMID:23563954
Cellulases: Cooperative biomass breakdown. PMID:23563527
Structural and biochemical analyses of glycoside hydrolase families 5 and 26 β-(1,4)-mannanases from Podospora anserina reveal differences upon manno-oligosaccharide catalysis. PMID:23558681
New paralogues and revised time line in the expansion of the vertebrate GH18 family. PMID:23558346
Genomic evaluation of Thermoanaerobacter spp. for the construction of designer co-cultures to improve lignocellulosic biofuel production. PMID:23555660
Composition and expression of genes encoding carbohydrate-active enzymes in the straw-degrading mushroom Volvariella volvacea. PMID:23554925
Serum-stimulated cell cycle entry promotes ncOGT synthesis required for cyclin D expression. PMID:23552487
Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus. PMID:23545652
Enzymatic synthesis of novel phloretin glucosides. PMID:23542617
The copper active site of CBM33 polysaccharide oxygenases. PMID:23540833
Sequencing and comparative analysis of the straw mushroom (Volvariella volvacea) genome. PMID:23526973
Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium. PMID:23525113
Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs. PMID:23524681
Improved transferase/hydrolase ratio through rational design of a family 1 β-glucosidase from Thermotoga neapolitana. PMID:23524680
GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria. PMID:23519420
The adhesive and cohesive properties of a bacterial polysaccharide adhesin are modulated by a deacetylase. PMID:23517529
Draft Genome Sequence of Rhizopus chinensis CCTCCM201021, Used for Brewing Traditional Chinese Alcoholic Beverages. PMID:23516228
Coevolution and life cycle specialization of plant cell wall degrading enzymes in a hemibiotrophic pathogen. PMID:23515261
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. PMID:23514094
SUN proteins belong to a novel family of β-(1,3)-glucan-modifying enzymes involved in fungal morphogenesis. PMID:23508952
Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment. PMID:23506434
Computational investigation of the pH dependence of loop flexibility and catalytic function in glycoside hydrolases. PMID:23504310
Characteristics of thermostable endoxylanase and β-xylosidase of the extremely thermophilic bacterium Geobacillus thermodenitrificans TSAA1 and its applicability in generating xylooligosaccharides and xylose from agro-residues. PMID:23504033
Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site. PMID:23504022
Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. PMID:23503598
Enterococcus faecalis utilizes maltose by connecting two incompatible metabolic routes via a novel maltose 6'-phosphate phosphatase (MapP). PMID:23490043
The structure of a Streptomyces avermitilis α-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement. PMID:23486481
Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum. PMID:23479733
PelN is a new pectate lyase of Dickeya dadantii with unusual characteristics. PMID:23475966
Metagenomic analysis of the pygmy loris fecal microbiome reveals unique functional capacity related to metabolism of aromatic compounds. PMID:23457582
Biochemical and biophysical characterization of the sialyl-/hexosyltransferase synthesizing the meningococcal serogroup W135 heteropolysaccharide capsule. PMID:23439648
Roles of predicted glycosyltransferases in the biosynthesis of the Rhizobium etli CE3 O antigen. PMID:23435981
The Burkholderia contaminans MS14 ocfC gene encodes a xylosyltransferase for production of the antifungal occidiofungin. PMID:23435879
Three-dimensional structure of Saccharomyces invertase: role of a non-catalytic domain in oligomerization and substrate specificity. PMID:23430743
Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates. PMID:23430256
Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation. PMID:23418476
α-Galacturonidase(s): a new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif. PMID:23416295
De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes. PMID:23414703
Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes. PMID:23405862
Evolutionary history of eukaryotic α-glucosidases from the α-amylase family. PMID:23397242
Discovery of glycoside hydrolase enzymes in an avicel-adapted forest soil fungal community by a metatranscriptomic approach. PMID:23393585
Overproduction, purification, crystallization and preliminary X-ray characterization of the C-terminal family 65 carbohydrate-binding module (CBM65B) of endoglucanase Cel5A from Eubacterium cellulosolvens. PMID:23385766
Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris. PMID:23385754
Overexpression, crystallization and preliminary X-ray crystallographic analysis of β-N-acetylglucosaminidase from Thermotoga maritima encoded by the Tm0809 gene. PMID:23385748
Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens. PMID:23383313
An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein. PMID:23371948
The evolution and pathogenic mechanisms of the rice sheath blight pathogen. PMID:23361014
De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen. PMID:23349770
Mining of novel thermo-stable cellulolytic genes from a thermophilic cellulose-degrading consortium by metagenomics. PMID:23341999
Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction. PMID:23339486
Characterization of a novel metagenome-derived 6-phospho-β-glucosidase from black liquor sediment. PMID:23335769
Cloning, overexpression, purification, and characterization of a polyextremophilic β-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi. PMID:23320757
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. PMID:23316438
Structural, biochemical, and computational characterization of the glycoside hydrolase family 7 cellobiohydrolase of the tree-killing fungus Heterobasidion irregulare. PMID:23303184
Isolation of Paenibacillus sp. and Variovorax sp. strains from decaying woods and characterization of their potential for cellulose deconstruction. PMID:23301200
Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces. PMID:23301151
Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group. PMID:23301019
Structural insights into cellulolytic and chitinolytic enzymes revealing crucial residues of insect β-N-acetyl-D-hexosaminidase. PMID:23300622
Cloning and recombinant expression of a cellulase from the cellulolytic strain Streptomyces sp. G12 isolated from compost. PMID:23267666
Phylogenetic distribution of potential cellulases in bacteria. PMID:23263967
Use of novel mutant galactosyltransferase for the bioconjugation of terminal N-acetylglucosamine (GlcNAc) residues on live cell surface. PMID:23259695
Glycosyltransferases from oat (Avena) implicated in the acylation of avenacins. PMID:23258535
Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx. PMID:23251564
Peptidoglycan: a post-genomic analysis. PMID:23249425
Proteomic analysis of cell walls of two developmental stages of alfalfa stems. PMID:23248635
Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a β-1,4-galactan β-1,4-galactosyltransferase. PMID:23243126
Cloning, molecular characterization, and mRNA expression of the thermostable family 3 β-glucosidase from the rare fungus Stachybotrys microspora. PMID:23242634
Molecular genetic basis of the human Forssman glycolipid antigen negativity. PMID:23240079
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PMID:23236275
Endo-(1,4)-β-glucanase gene families in the grasses: temporal and spatial co-transcription of orthologous genes. PMID:23231659
Understanding how noncatalytic carbohydrate binding modules can display specificity for xyloglucan. PMID:23229556
The Penicillium echinulatum secretome on sugar cane bagasse. PMID:23227186
Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. PMID:23226415
Crystallographic snapshot of cellulose synthesis and membrane translocation. PMID:23222542
Analysis of genome content evolution in pvc bacterial super-phylum: assessment of candidate genes associated with cellular organization and lifestyle. PMID:23221607
How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity. PMID:23213210
Symptomatic atherosclerosis is associated with an altered gut metagenome. PMID:23212374
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. PMID:23209564
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PMID:23209441
Role of the CipA scaffoldin protein in cellulose solubilization, as determined by targeted gene deletion and complementation in Clostridium thermocellum. PMID:23204466
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. PMID:23203881
Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates. PMID:23200660
ESTHER, the database of the α/β-hydrolase fold superfamily of proteins: tools to explore diversity of functions. PMID:23193256
Structure of the α-1,6/α-1,4-specific glucansucrase GTFA from Lactobacillus reuteri 121. PMID:23192022
PeroxiBase: a database for large-scale evolutionary analysis of peroxidases. PMID:23180785
Molecular characterization of β-fructofuranosidases from Rhizopus delemar and Amylomyces rouxii. PMID:23180124
Suite of activity-based probes for cellulose-degrading enzymes. PMID:23176123
A galacturonic acid-containing xyloglucan is involved in Arabidopsis root hair tip growth. PMID:23175743
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. PMID:23171342
Phylogenomic relationships between amylolytic enzymes from 85 strains of fungi. PMID:23166747
Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes. PMID:23150581
The unique architecture and function of cellulose-interacting proteins in oomycetes revealed by genomic and structural analyses. PMID:23140525
Cellulase linkers are optimized based on domain type and function: insights from sequence analysis, biophysical measurements, and molecular simulation. PMID:23139804
Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes. PMID:23133637
Structural enzymology of Cellvibrio japonicus Agd31B protein reveals α-transglucosylase activity in glycoside hydrolase family 31. PMID:23132856
Identification and characterization of an autolysin gene, atlA, from Streptococcus criceti. PMID:23124745
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina. PMID:23124232
Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle. PMID:23116131
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions. PMID:23112164
Bacterial chitinolytic communities respond to chitin and pH alteration in soil. PMID:23104407
O-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis. PMID:23103942
Paradigmatic status of an endo- and exoglucanase and its effect on crystalline cellulose degradation. PMID:23095278
Metabolic mechanism of mannan in a ruminal bacterium, Ruminococcus albus, involving two mannoside phosphorylases and cellobiose 2-epimerase: discovery of a new carbohydrate phosphorylase, β-1,4-mannooligosaccharide phosphorylase. PMID:23093406
Characterisation of two bifunctional cellulase-xylanase enzymes isolated from a bovine rumen metagenome library. PMID:23086538
Putative chitin synthases from Branchiostoma floridae show extracellular matrix-related domains and mosaic structures. PMID:23084775
Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases. PMID:23082751
Functional characterization, homology modeling and docking studies of β-glucosidase responsible for bioactivation of cyanogenic hydroxynitrile glucosides from Leucaena leucocephala (subabul). PMID:23079707
Expression and characterization of a Bifidobacterium adolescentis beta-mannanase carrying mannan-binding and cell association motifs. PMID:23064345
Sequence, structure, and evolution of cellulases in glycoside hydrolase family 48. PMID:23055526
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. PMID:23045686
Pharmacological chaperones for human α-N-acetylgalactosaminidase. PMID:23045655
Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates. PMID:23035824
Transcriptional analysis of prebiotic uptake and catabolism by Lactobacillus acidophilus NCFM. PMID:23028535
XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. PMID:23027943
Crystallization and preliminary crystallographic studies of CbsA, a secretory exoglucanase from Xanthomonas oryzae pv. oryzae. PMID:23027745
Structure of β-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 Å resolution. PMID:23027740
Characterization of a broad-specificity β-glucanase acting on β-(1,3)-, β-(1,4)-, and β-(1,6)-glucans that defines a new glycoside hydrolase family. PMID:23023747
The use of glycoinformatics in glycochemistry. PMID:23015842
The molecular mechanism of thermostable α-galactosidases AgaA and AgaB explained by x-ray crystallography and mutational studies. PMID:23012371
Structural basis of heparan sulfate-specific degradation by heparinase III. PMID:23011846
Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail. PMID:22998985
High abundance of Serine/Threonine-rich regions predicted to be hyper-O-glycosylated in the secretory proteins coded by eight fungal genomes. PMID:22994653
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5). PMID:22992189
The substrate/product-binding modes of a novel GH120 β-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485. PMID:22992047
Domain organization of the polymerizing mannosyltransferases involved in synthesis of the Escherichia coli O8 and O9a lipopolysaccharide O-antigens. PMID:22989876
Versatile high resolution oligosaccharide microarrays for plant glycobiology and cell wall research. PMID:22988248
Identification of novel α1,3-galactosyltransferase and elimination of α-galactose-containing glycans by disruption of multiple α-galactosyltransferase genes in Schizosaccharomyces pombe. PMID:22988247
Genomic approaches to studying the human microbiota. PMID:22972298
Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena). PMID:22963241
Agrobacteria lacking ornithine lipids induce more rapid tumour formation. PMID:22958119
New insights on the sialidase protein family revealed by a phylogenetic analysis in metazoa. PMID:22952925
Deep insight into the Ganoderma lucidum by comprehensive analysis of its transcriptome. PMID:22952861
Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection. PMID:22951933
Structure of the starch-debranching enzyme barley limit dextrinase reveals homology of the N-terminal domain to CBM21. PMID:22949184
Function and 3D structure of the N-glycans on glycoproteins. PMID:22942711
Characterization of an endo-processive-type xyloglucanase having a β-1,4-glucan-binding module and an endo-type xyloglucanase from Streptomyces avermitilis. PMID:22941084
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. PMID:22937793
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants. PMID:22934241
Molecular characterization of an α-N-acetylgalactosaminidase from Clonorchis sinensis. PMID:22926676
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. PMID:22925495
Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. PMID:22923678
Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus. PMID:22918832
Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PMID:22912594
Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism. PMID:22910908
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. PMID:22885923
Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis. PMID:22877077
Biosynthesis of the polymannose lipopolysaccharide O-antigens from Escherichia coli serotypes O8 and O9a requires a unique combination of single- and multiple-active site mannosyltransferases. PMID:22875852
The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome. PMID:22873931
High resolution crystal structure of the endo-N-Acetyl-β-D-glucosaminidase responsible for the deglycosylation of Hypocrea jecorina cellulases. PMID:22859955
Diversity in the protein N-glycosylation pathways within the Campylobacter genus. PMID:22859570
Molecular and biochemical analyses of the GH44 module of CbMan5B/Cel44A, a bifunctional enzyme from the hyperthermophilic bacterium Caldicellulosiruptor bescii. PMID:22843537
Discovery of glycosyltransferases using carbohydrate arrays and mass spectrometry. PMID:22820418
Two unique ligand-binding clamps of Rhizopus oryzae starch binding domain for helical structure disruption of amylose. PMID:22815939
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin. PMID:22812459
Developing inhibitors of glycan processing enzymes as tools for enabling glycobiology. PMID:22810773
The structure- and metal-dependent activity of Escherichia coli PgaB provides insight into the partial de-N-acetylation of poly-β-1,6-N-acetyl-D-glucosamine. PMID:22810235
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. PMID:22810059
The cloning, expression, purification, characterization and modeled structure of Caulobacter crescentus β-Xylosidase I. PMID:22806729
Mapping the polysaccharide degradation potential of Aspergillus niger. PMID:22799883
Insight into the structure, dynamics and the unfolding property of amylosucrases: implications of rational engineering on thermostability. PMID:22792323
Cell wall evolution and diversity. PMID:22783271
Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans. PMID:22778272
Chimeric cellulase matrix for investigating intramolecular synergism between non-hydrolytic disruptive functions of carbohydrate-binding modules and catalytic hydrolysis. PMID:22778256
Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion. PMID:22773628
Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion. PMID:22761870
Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen. PMID:22761666
Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization. PMID:22759983
Arabinogalactan-proteins and the research challenges for these enigmatic plant cell surface proteoglycans. PMID:22754559
Novel enzymes for the degradation of cellulose. PMID:22747961
Human YKL-39 is a pseudo-chitinase with retained chitooligosaccharide-binding properties. PMID:22742450
Genome sequence of the model medicinal mushroom Ganoderma lucidum. PMID:22735441
Endo-exo synergism in cellulose hydrolysis revisited. PMID:22733813
Genomics of aerobic cellulose utilization systems in actinobacteria. PMID:22723998
Complex carbohydrate utilization by the healthy human microbiome. PMID:22719820
Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose. PMID:22718248
Functional diversity within the simple gut microbiota of the honey bee. PMID:22711827
Small molecules containing hetero-bicyclic ring systems compete with UDP-Glc for binding to WaaG glycosyltransferase. PMID:22711644
N-acetylgalactosamine utilization pathway and regulon in proteobacteria: genomic reconstruction and experimental characterization in Shewanella. PMID:22711537
Cloning, expression and characterization of a metagenome derived thermoactive/thermostable pectinase. PMID:22711301
Tetrameric structure of the GlfT2 galactofuranosyltransferase reveals a scaffold for the assembly of mycobacterial Arabinogalactan. PMID:22707726
Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. PMID:22706449
Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PMID:22701672
Metabolism of vertebrate amino sugars with N-glycolyl groups: intracellular β-O-linked N-glycolylglucosamine (GlcNGc), UDP-GlcNGc, and the biochemical and structural rationale for the substrate tolerance of β-O-linked β-N-acetylglucosaminidase. PMID:22692202
Enzymology and structure of the GH13_31 glucan 1,6-α-glucosidase that confers isomaltooligosaccharide utilization in the probiotic Lactobacillus acidophilus NCFM. PMID:22685275
Two SusD-like proteins encoded within a polysaccharide utilization locus of an uncultured ruminant Bacteroidetes phylotype bind strongly to cellulose. PMID:22685144
Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice. PMID:22665444
The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives. PMID:22654891
Product binding varies dramatically between processive and nonprocessive cellulase enzymes. PMID:22648408
Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system. PMID:22646801
dbCAN: a web resource for automated carbohydrate-active enzyme annotation. PMID:22645317
Tracing determinants of dual substrate specificity in glycoside hydrolase family 5. PMID:22645145
Golgi-mediated synthesis and secretion of matrix polysaccharides of the primary cell wall of higher plants. PMID:22639665
Mechanistic insights into the retaining glucosyl-3-phosphoglycerate synthase from mycobacteria. PMID:22637481
Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass. PMID:22636774
The metagenome of an anaerobic microbial community decomposing poplar wood chips. PMID:22629327
Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families. PMID:22629278
Overexpression of an exotic thermotolerant β-glucosidase in trichoderma reesei and its significant increase in cellulolytic activity and saccharification of barley straw. PMID:22607229
Structure of human POFUT2: insights into thrombospondin type 1 repeat fold and O-fucosylation. PMID:22588082
Disruption of the Eng18B ENGase gene in the fungal biocontrol agent Trichoderma atroviride affects growth, conidiation and antagonistic ability. PMID:22586463
Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides. PMID:22585921
Invertebrate lysozymes: diversity and distribution, molecular mechanism and in vivo function. PMID:22581338
Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases. PMID:22578542
Microbial degradation of complex carbohydrates in the gut. PMID:22572875
The genome of Ganoderma lucidum provides insights into triterpenes biosynthesis and wood degradation [corrected]. PMID:22567134
The glycosyltransferase repertoire of the spikemoss Selaginella moellendorffii and a comparative study of its cell wall. PMID:22567114
Human milk oligosaccharides promote the growth of staphylococci. PMID:22562995
Influence of a mannan binding family 32 carbohydrate binding module on the activity of the appended mannanase. PMID:22562994
Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum. PMID:22548871
mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection. PMID:22545137
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PMID:22536372
Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source. PMID:22535948
A scissor blade-like closing mechanism implicated in transmembrane signaling in a Bacteroides hybrid two-component system. PMID:22532667
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. PMID:22532664
Sequence fingerprints of enzyme specificities from the glycoside hydrolase family GH57. PMID:22527043
Mining of unexplored habitats for novel chitinases--chiA as a helper gene proxy in metagenomics. PMID:22526805
Characterization of α2,3- and α2,6-sialyltransferases from Helicobacter acinonychis. PMID:22504533
Proteomic analysis of Fusarium solani isolated from the Asian longhorned beetle, Anoplophora glabripennis. PMID:22496740
Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains. PMID:22492980
How glycan metabolism shapes the human gut microbiota. PMID:22491358
Amylases without known homologues discovered in an acid mine drainage: significance and impact. PMID:22482035
Genome-wide analysis of cell wall-related genes in Tuber melanosporum. PMID:22481122
Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins. PMID:22474347
RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis. PMID:22474179
1,3-1,4-α-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains. PMID:22451675
Klotho coreceptors inhibit signaling by paracrine fibroblast growth factor 8 subfamily ligands. PMID:22451487
Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. PMID:22430844
N-glycoform diversity of cellobiohydrolase I from Penicillium decumbens and synergism of nonhydrolytic glycoform in cellulose degradation. PMID:22427663
Recruitment of glycosyl hydrolase proteins in a cone snail venomous arsenal: further insights into biomolecular features of Conus venoms. PMID:22412800
Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima. PMID:22411095
Identification and characterization of a lipopolysaccharide α,2,3-sialyltransferase from the human pathogen Helicobacter bizzozeronii. PMID:22408169
The gpsX gene encoding a glycosyltransferase is important for polysaccharide production and required for full virulence in Xanthomonas citri subsp. citri. PMID:22404966
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. PMID:22396667
Analysis of keystone enzyme in Agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds. PMID:22393053
Effect of C-terminal truncation on enzyme properties of recombinant amylopullulanase from Thermoanaerobacter pseudoethanolicus. PMID:22392283
Improved thermostability of Clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis. PMID:22389377
Functional analysis of the degradation of cellulosic substrates by a Chaetomium globosum endophytic isolate. PMID:22389369
Distinct characteristics of single starch-binding domain SBD1 derived from tandem domains SBD1-SBD2 of halophilic Kocuria varians alpha-amylase. PMID:22388479
Analysis of the arabinoxylan arabinofuranohydrolase gene family in barley does not support their involvement in the remodelling of endosperm cell walls during development. PMID:22378943
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. PMID:22378535
Structural and biochemical characterization of glycoside hydrolase family 79 β-glucuronidase from Acidobacterium capsulatum. PMID:22367201
Laforin, a protein with many faces: glucan phosphatase, adapter protein, et alii. PMID:22364389
4,6-α-Glucanotransferase activity occurs more widespread in Lactobacillus strains and constitutes a separate GH70 subfamily. PMID:22361861
L-rhamnose induction of Aspergillus nidulans α-L-rhamnosidase genes is glucose repressed via a CreA-independent mechanism acting at the level of inducer uptake. PMID:22353731
Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL. PMID:22344647
Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66. PMID:22337884
Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1. PMID:22334583
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis. PMID:22300648
A novel extracellular metallopeptidase domain shared by animal host-associated mutualistic and pathogenic microbes. PMID:22299034
Three-dimensional structure of a thermophilic family GH11 xylanase from Thermobifida fusca. PMID:22297985
Structure of a pectin methylesterase from Yersinia enterocolitica. PMID:22297983
Expression of mung bean pectin acetyl esterase in potato tubers: effect on acetylation of cell wall polymers and tuber mechanical properties. PMID:22293853
Homodimeric β-galactosidase from Lactobacillus delbrueckii subsp. bulgaricus DSM 20081: expression in Lactobacillus plantarum and biochemical characterization. PMID:22283494
Structural studies of the spinosyn rhamnosyltransferase, SpnG. PMID:22283226
Identification and characterization of a novel polysaccharide deacetylase C (PdaC) from Bacillus subtilis. PMID:22277649
Functional association of catalytic and ancillary modules dictates enzymatic activity in glycoside hydrolase family 43 β-xylosidase. PMID:22270362
Genome analyses highlight the different biological roles of cellulases. PMID:22266780
Metatranscriptomics reveals the diversity of genes expressed by eukaryotes in forest soils. PMID:22238585
Structure of CBM3b of the major cellulosomal scaffoldin subunit ScaA from Acetivibrio cellulolyticus. PMID:22232162
Metabolism of sugars by genetically diverse species of oral Leptotrichia. PMID:22230464
Characterization of Halomonas sp. strain H11 α-glucosidase activated by monovalent cations and its application for efficient synthesis of α-D-glucosylglycerol. PMID:22226947
Association of novel domain in active site of archaic hyperthermophilic maltogenic amylase from Staphylothermus marinus. PMID:22223643
Latitudinal gradients in degradation of marine dissolved organic carbon. PMID:22216139
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. PMID:22216014
The Fibrobacteres: an important phylum of cellulose-degrading bacteria. PMID:22213055
Structural investigation of the thermostability and product specificity of amylosucrase from the bacterium Deinococcus geothermalis. PMID:22210773
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PMID:22205877
Glycosides of hydroxyproline: some recent, unusual discoveries. PMID:22190471
Identification and characterization of novel cellulolytic and hemicellulolytic genes and enzymes derived from German grassland soil metagenomes. PMID:22187078
Correlation of gene expression and protein production rate - a system wide study. PMID:22185473
Complete genome sequence of "Enterobacter lignolyticus" SCF1. PMID:22180812
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. PMID:22156394
Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module. PMID:22147693
A thermostable GH45 endoglucanase from yeast: impact of its atypical multimodularity on activity. PMID:22145993
Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability. PMID:22145589
A Guided Tour of the Structural Biology of Gaucher Disease: Acid-β-Glucosidase and Saposin C. PMID:22145077
Crystallization and preliminary crystallographic analysis of dextranase from Streptococcus mutans. PMID:22139161
S-layer homology domain proteins Csac_0678 and Csac_2722 are implicated in plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. PMID:22138994
Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex. PMID:22135470
Cyclodextrin glycosyltransferase: a key enzyme in the assimilation of starch by the halophilic archaeon Haloferax mediterranei. PMID:22134680
The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose. PMID:22132148
Cellulases dig deep: in situ observation of the mesoscopic structural dynamics of enzymatic cellulose degradation. PMID:22128148
The Pfam protein families database. PMID:22127870
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. PMID:22123987
Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. PMID:22123899
Biochemical characterization of a novel thermostable xyloglucanase from an alkalothermophilic Thermomonospora sp. PMID:22120834
Molecular cloning of a xylosyltransferase that transfers the second xylose to O-glucosylated epidermal growth factor repeats of notch. PMID:22117070
α-N-acetylgalactosaminidase from infant-associated bifidobacteria belonging to novel glycoside hydrolase family 129 is implicated in alternative mucin degradation pathway. PMID:22090027
Functional characterization and target discovery of glycoside hydrolases from the digestome of the lower termite Coptotermes gestroi. PMID:22081966
Distinct roles of β-galactosidase paralogues of the rumen bacterium Mannheimia succiniciproducens. PMID:22081396
A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background. PMID:22080343
Identification and phylogenetic characterization of a new subfamily of α-amylase enzymes from marine microorganisms. PMID:22076622
Approaches to Fungal Genome Annotation. PMID:22059117
Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. PMID:22053731
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. PMID:22046142
Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu. PMID:22045919
Comparative genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans. PMID:22039924
Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. PMID:22036470
Xylan oligosaccharides and cellobiohydrolase I (TrCel7A) interaction and effect on activity. PMID:22035059
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. PMID:22030749
Carbohydrate-active enzymes exemplify entropic principles in metabolism. PMID:22027553
Heterologous expression and characterization of processing α-glucosidase I from Aspergillus brasiliensis ATCC 9642. PMID:22020441
Free energy study of the catalytic mechanism of Trypanosoma cruzi trans-sialidase. From the Michaelis complex to the covalent intermediate. PMID:22007596
Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus. PMID:22006318
Evidence of cellulose metabolism by the giant panda gut microbiome. PMID:22006317
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134. PMID:22003006
A new family of carbohydrate esterases is represented by a GDSL hydrolase/acetylxylan esterase from Geobacillus stearothermophilus. PMID:21994937
Biosynthesis of the Pseudomonas aeruginosa Extracellular Polysaccharides, Alginate, Pel, and Psl. PMID:21991261
Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity. PMID:21987796
Dermatophyte virulence factors: identifying and analyzing genes that may contribute to chronic or acute skin infections. PMID:21977036
Structural insights into the mechanism of protein O-fucosylation. PMID:21966509
Hydrophilic aromatic residue and in silico structure for carbohydrate binding module. PMID:21966371
Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation. PMID:21965672
Proteomic and functional analysis of the cellulase system expressed by Postia placenta during brown rot of solid wood. PMID:21948841
α-Galactosidase/sucrose kinase (AgaSK), a novel bifunctional enzyme from the human microbiome coupling galactosidase and kinase activities. PMID:21931163
Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7. PMID:21914885
Structure, dynamics, and ionization equilibria of the tyrosine residues in Bacillus circulans xylanase. PMID:21912982
Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma). PMID:21908640
Carbohydrate-active enzymes from pigmented Bacilli: a genomic approach to assess carbohydrate utilization and degradation. PMID:21892951
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PMID:21876677
Electrospray ionization Fourier transform mass spectrometric analysis of intact bikunin glycosaminoglycan from normal human plasma. PMID:21860600
Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses. PMID:21849025
Mechanistic analysis of trehalose synthase from Mycobacterium smegmatis. PMID:21840994
Expression and characterization of a Mycoplasma genitalium glycosyltransferase in membrane glycolipid biosynthesis: potential target against mycoplasma infections. PMID:21835921
Structural and kinetic analysis of substrate binding to the sialyltransferase Cst-II from Campylobacter jejuni. PMID:21832050
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens. PMID:21829347
CBM3d, a novel subfamily of family 3 carbohydrate-binding modules identified in Cel48A exoglucanase of Cellulosilyticum ruminicola. PMID:21803997
Enzymatic properties and substrate specificity of the trehalose phosphorylase from Caldanaerobacter subterraneus. PMID:21803886
The two endo-β-N-acetylglucosaminidase genes from Arabidopsis thaliana encode cytoplasmic enzymes controlling free N-glycan levels. PMID:21796445
Expression, crystallization and preliminary X-ray diffraction studies of thermostable β-1,3-xylanase from Thermotoga neapolitana strain DSM 4359. PMID:21795792
Structure and activity of Paenibacillus polymyxa xyloglucanase from glycoside hydrolase family 44. PMID:21795708
Sequence-structural features and evolutionary relationships of family GH57 α-amylases and their putative α-amylase-like homologues. PMID:21786160
Fungal enzyme sets for plant polysaccharide degradation. PMID:21785931
Characterization of two distinct glycosyl hydrolase family 78 alpha-L-rhamnosidases from Pediococcus acidilactici. PMID:21784921
Fructo-oligosaccharide synthesis by mutant versions of Saccharomyces cerevisiae invertase. PMID:21764973
Cleavage of cellulose by a CBM33 protein. PMID:21748815
Environmental and gut bacteroidetes: the food connection. PMID:21747801
Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. PMID:21742923
Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis. PMID:21738787
Enzymatic degradation of granular potato starch by Microbacterium aurum strain B8.A. PMID:21732245
Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment. PMID:21730956
Cell wall modifications in maize pulvini in response to gravitational stress. PMID:21697508
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PMID:21695235
Maize opaque5 encodes monogalactosyldiacylglycerol synthase and specifically affects galactolipids necessary for amyloplast and chloroplast function. PMID:21685260
Novel family of carbohydrate-binding modules revealed by the genome sequence of Spirochaeta thermophila DSM 6192. PMID:21685171
High-temperature enzymatic breakdown of cellulose. PMID:21685160
Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community. PMID:21685158
Cellulases: ambiguous nonhomologous enzymes in a genomic perspective. PMID:21683463
Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation. PMID:21672225
Draft genome sequencing and comparative analysis of Aspergillus sojae NBRC4239. PMID:21659486
Snapshot of the eukaryotic gene expression in muskoxen rumen--a metatranscriptomic approach. PMID:21655220
Endo-beta-1,3-galactanase from winter mushroom Flammulina velutipes. PMID:21653698
Structural and functional analysis of a new subfamily of glycosyltransferases required for glycosylation of serine-rich streptococcal adhesins. PMID:21653318
Mimivirus shows dramatic genome reduction after intraamoebal culture. PMID:21646533
Building custom polysaccharides in vitro with an efficient, broad-specificity xyloglucan glycosynthase and a fucosyltransferase. PMID:21618981
Phylogenetic distribution of intron positions in alpha-amylase genes of bilateria suggests numerous gains and losses. PMID:21611157
Comamonas testosteronan synthase, a bifunctional glycosyltransferase that produces a unique heparosan polysaccharide analog. PMID:21610195
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. PMID:21596990
Glycosyltransferase structural biology and its role in the design of catalysts for glycosylation. PMID:21592771
Thermostable recombinant xylanases from Nonomuraea flexuosa and Thermoascus aurantiacus show distinct properties in the hydrolysis of xylans and pretreated wheat straw. PMID:21592333
Structural and enzymatic characterization of NanS (YjhS), a 9-O-Acetyl N-acetylneuraminic acid esterase from Escherichia coli O157:H7. PMID:21557376
Identification of the sequence motif of glycoside hydrolase 13 family members. PMID:21544166
Deep sequencing of voodoo lily (Amorphophallus konjac): an approach to identify relevant genes involved in the synthesis of the hemicellulose glucomannan. PMID:21538106
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. PMID:21536894
Engineering lower inhibitor affinities in β-D-xylosidase of Selenomonas ruminantium by site-directed mutagenesis of Trp145. PMID:21528413
The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PMID:21526192
Virulence gene pool detected in bovine group C Streptococcus dysgalactiae subsp. dysgalactiae isolates by use of a group A S. pyogenes virulence microarray. PMID:21525223
PmST2: a novel Pasteurella multocida glycolipid α2-3-sialyltransferase. PMID:21515586
Distantly related plant and nematode core α1,3-fucosyltransferases display similar trends in structure-function relationships. PMID:21515584
Crystallization and preliminary X-ray diffraction studies of the catalytic domain of a novel chitinase, a member of GH family 23, from the moderately thermophilic bacterium Ralstonia sp. A-471. PMID:21505250
Overproduction, purification, crystallization and preliminary X-ray characterization of a novel carbohydrate-binding module of endoglucanase Cel5A from Eubacterium cellulosolvens. PMID:21505249
Structural analysis of a putative family 32 carbohydrate-binding module from the Streptococcus pneumoniae enzyme EndoD. PMID:21505233
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. PMID:21501500
Computational bacterial genome-wide analysis of phylogenetic profiles reveals potential virulence genes of Streptococcus agalactiae. PMID:21483735
Processivity and subcellular localization of glycogen synthase depend on a non-catalytic high affinity glycogen-binding site. PMID:21464127
A novel, noncatalytic carbohydrate-binding module displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization. PMID:21454512
Golgi glycosylation. PMID:21441588
Properties of CsnR, the transcriptional repressor of the chitosanase gene, csnA, of Streptomyces lividans. PMID:21441516
Evidence that WapB is a 1,2-glucosyltransferase of Pseudomonas aeruginosa involved in Lipopolysaccharide outer core biosynthesis. PMID:21441506
Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis. PMID:21393568
Expression, stability, and replacement of glucan-remodeling enzymes during developmental transitions in Saccharomyces cerevisiae. PMID:21389112
Analysis of a new family of widely distributed metal-independent alpha-mannosidases provides unique insight into the processing of N-linked glycans. PMID:21388958
Structure and function of an arabinoxylan-specific xylanase. PMID:21378160
Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003. PMID:21375716
Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio. PMID:21368904
Toward the functional analysis of uncultivable, symbiotic microorganisms in the termite gut. PMID:21365277
Identification of surface proteins in Enterococcus faecalis V583. PMID:21362161
Chemical arsenal for the study of O-GlcNAc. PMID:21358590
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. PMID:21356102
Aglycone specificity of Thermotoga neapolitana β-glucosidase 1A modified by mutagenesis, leading to increased catalytic efficiency in quercetin-3-glucoside hydrolysis. PMID:21345211
The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases. PMID:21339299
Bacterial supersystem for alginate import/metabolism and its environmental and bioenergy applications. PMID:21326935
Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi. PMID:21324176
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). PMID:21304681
Crystallization and preliminary crystallographic analysis of β-mannanase from Bacillus licheniformis. PMID:21301089
Molecular analysis of a family of Arabidopsis genes related to galacturonosyltransferases. PMID:21300919
Thermostability in endoglucanases is fold-specific. PMID:21291533
Substrate and metal ion promiscuity in mannosylglycerate synthase. PMID:21288903
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. PMID:21262841
Life cycle analysis of the model organism Rhodopirellula baltica SH 1(T) by transcriptome studies. PMID:21255355
Proteome-wide systems analysis of a cellulosic biofuel-producing microbe. PMID:21245846
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level. PMID:21241472
Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. PMID:21232122
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725. PMID:21227922
Identification and functional analysis of a gene encoding β-glucosidase from the brown-rot basidiomycete Fomitopsis palustris. PMID:21221939
Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes. PMID:21219452
Fungal arabinan and L-arabinose metabolism. PMID:21212945
The Actinobacillus pleuropneumoniae HMW1C-like glycosyltransferase mediates N-linked glycosylation of the Haemophilus influenzae HMW1 adhesin. PMID:21209858
Identifying selective inhibitors against the human cytosolic sialidase NEU2 by substrate specificity studies. PMID:21206954
Crystallization and preliminary X-ray analysis of a cold-active endo-β-1,4-D-xylanase from glycoside hydrolase family 8. PMID:21206049
Expression, purification and preliminary crystallographic analysis of the recombinant β-glucosidase (BglA) from the halothermophile Halothermothrix orenii. PMID:21206038
Crystallization and preliminary crystallographic analysis of the glycoside hydrolase family 115 α-glucuronidase from Streptomyces pristinaespiralis. PMID:21206027
Diversity of beetle genes encoding novel plant cell wall degrading enzymes. PMID:21179425
Heterologously expressed family 51 alpha-L-arabinofuranosidases from Oenococcus oeni and Lactobacillus brevis. PMID:21169445
N-glycans of Phaeodactylum tricornutum diatom and functional characterization of its N-acetylglucosaminyltransferase I enzyme. PMID:21169367
Natural product-guided discovery of a fungal chitinase inhibitor. PMID:21168763
Tryptophan residues promote membrane association for a plant lipid glycosyltransferase involved in phosphate stress. PMID:21156807
Molecular cloning and characterization of a beta-L-Arabinobiosidase in Bifidobacterium longum that belongs to a novel glycoside hydrolase family. PMID:21149454
Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups. PMID:21147778
Characterization of a novel beta-xylosidase, XylC, from Thermoanaerobacterium saccharolyticum JW/SL-YS485. PMID:21131522
The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein. PMID:21112302
Glycomics hits the big time. PMID:21111227
Modeling the self-assembly of the cellulosome enzyme complex. PMID:21098021
Physiological characteristics of the extreme thermophile Caldicellulosiruptor saccharolyticus: an efficient hydrogen cell factory. PMID:21092203
Characterization of maltase clusters in the genus Drosophila. PMID:21082169
Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis. PMID:21057783
Processivity of cellobiohydrolases is limited by the substrate. PMID:21051539
Crystallization and preliminary X-ray diffraction analysis of the fructofuranosidase from Xanthophyllomyces dendrorhous. PMID:21045290
ThYme: a database for thioester-active enzymes. PMID:21045059
Acetazolamide-based fungal chitinase inhibitors. PMID:21044846
Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomass. PMID:21037302
Biosynthetic origin of the galactosamine substituent of Arabinogalactan in Mycobacterium tuberculosis. PMID:21030587
Cloning and characterization of a viral α2-3-sialyltransferase (vST3Gal-I) for the synthesis of sialyl Lewisx. PMID:20978012
An efficient and versatile synthesis of GlcNAcstatins-potent and selective O-GlcNAcase inhibitors built on the tetrahydroimidazo[1,2-a]pyridine scaffold. PMID:20976183
Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon. PMID:20973991
Phylogenetic, microbiological, and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor. PMID:20971878
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. PMID:20962874
Gene duplications in prokaryotes can be associated with environmental adaptation. PMID:20961426
Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism. PMID:20944224
Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. PMID:20944220
The CAZyome of Phytophthora spp.: a comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora. PMID:20920201
An insect herbivore microbiome with high plant biomass-degrading capacity. PMID:20885794
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. PMID:20876108
Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass. PMID:20852069
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. PMID:20852019
The active site of oligogalacturonate lyase provides unique insights into cytoplasmic oligogalacturonate beta-elimination. PMID:20851883
Inhibition of O-GlcNAcase using a potent and cell-permeable inhibitor does not induce insulin resistance in 3T3-L1 adipocytes. PMID:20851343
Highly efficient chemoenzymatic synthesis of β1-3-linked galactosides. PMID:20830443
The structure of a family GH25 lysozyme from Aspergillus fumigatus. PMID:20823508
Hypocrea jecorina CEL6A protein engineering. PMID:20822549
Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum. PMID:20820855
Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. PMID:20814577
A testis-specific regulator of complex and hybrid N-glycan synthesis. PMID:20805325
Lack of α-xylosidase activity in Arabidopsis alters xyloglucan composition and results in growth defects. PMID:20801759
Characterization of the N-acetyl-α-D-glucosaminyl l-malate synthase and deacetylase functions for bacillithiol biosynthesis in Bacillus anthracis. PMID:20799687
Crystal structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis provides insights into the mechanism of substrate discrimination between exo- and endo-type enzymes in glycoside hydrolase family 43. PMID:20739278
Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study. PMID:20735824
Crystallisation of wild-type and variant forms of a recombinant plant enzyme β-D-glucan glucohydrolase from barley (Hordeum vulgare L.) and preliminary X-ray analysis. PMID:20717535
Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85. PMID:20709893
Structure-based evolutionary relationship of glycosyltransferases: a case study of vertebrate β1,4-galactosyltransferase, invertebrate β1,4-N-acetylgalactosaminyltransferase and α-polypeptidyl-N-acetylgalactosaminyltransferase. PMID:20705453
A CESA from Griffithsia monilis (Rhodophyta, Florideophyceae) has a family 48 carbohydrate-binding module. PMID:20702566
Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects. PMID:20696902
Hyper-production and characterization of the ι-carrageenase useful for ι-carrageenan oligosaccharide production from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94T, and insight into the unusual catalytic mechanism. PMID:20686828
Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d. PMID:20678238
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. PMID:20668243
Circular permutation provides an evolutionary link between two families of calcium-dependent carbohydrate binding modules. PMID:20659893
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. PMID:20626842
Genome sequence of the model mushroom Schizophyllum commune. PMID:20622885
Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species. PMID:20622123
Functional identification of the Proteus mirabilis core lipopolysaccharide biosynthesis genes. PMID:20622068
Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes. PMID:20622018
Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. PMID:20613792
Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations. PMID:20603004
A screen for deficiencies in GPI-anchorage of wall glycoproteins in yeast. PMID:20602336
A GH57 family amylopullulanase from deep-sea Thermococcus siculi: expression of the gene and characterization of the recombinant enzyme. PMID:20593184
Structural analysis of Saccharomyces cerevisiae alpha-galactosidase and its complexes with natural substrates reveals new insights into substrate specificity of GH27 glycosidases. PMID:20592022
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. PMID:20585943
Identification of residues important for the activity of Haloferax volcanii AglD, a component of the archaeal N-glycosylation pathway. PMID:20585355
Functional network of glycan-related molecules: glyco-net in glycoconjugate data bank. PMID:20584338
Novel α-glucosidase from human gut microbiome: substrate specificities and their switch. PMID:20581222
Discoidin I from Dictyostelium discoideum and Interactions with oligosaccharides: specificity, affinity, crystal structures, and comparison with discoidin II. PMID:20580724
Production of chitooligosaccharides and their potential applications in medicine. PMID:20559485
Gene sequence, bioinformatics and enzymatic characterization of alpha-amylase from Saccharomycopsis fibuligera KZ. PMID:20552260
Biochemical properties of pectate lyases produced by three different Bacillus strains isolated from fermenting cocoa beans and characterization of their cloned genes. PMID:20543060
Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. PMID:20532045
Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8. PMID:20522722
The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism. PMID:20519506
Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens. PMID:20507980
Thioesterases: a new perspective based on their primary and tertiary structures. PMID:20506386
The molecular basis of glycogen breakdown and transport in Streptococcus pneumoniae. PMID:20497336
β-Glucosidases. PMID:20490603
High-yield production, refolding and a molecular modelling of the catalytic module of (1,3)-beta-D-glucan (curdlan) synthase from Agrobacterium sp. PMID:20473714
Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis. PMID:20466768
Helicobacter hepaticus Hh0072 gene encodes a novel alpha1-3-fucosyltransferase belonging to CAZy GT11 family. PMID:20466652
Dissecting the in vivo metabolic potential of two human gut acetogens. PMID:20444704
Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity. PMID:20444687
Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases. PMID:20444686
Enzymatic deconstruction of xylan for biofuel production. PMID:20431716
Biosynthesis of pectin. PMID:20427466
A new archaeal beta-glycosidase from Sulfolobus solfataricus: seeding a novel retaining beta-glycan-specific glycoside hydrolase family along with the human non-lysosomal glucosylceramidase GBA2. PMID:20427274
Beyond the green: understanding the evolutionary puzzle of plant and algal cell walls. PMID:20421458
The XTH gene family: an update on enzyme structure, function, and phylogeny in xyloglucan remodeling. PMID:20421457
A membrane-located glycosyltransferase complex required for biosynthesis of the D-galactan I lipopolysaccharide O antigen in Klebsiella pneumoniae. PMID:20410291
The biochemistry and structural biology of plant cell wall deconstruction. PMID:20406913
Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate. PMID:20404324
Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. PMID:20400947
Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium. PMID:20400566
The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. PMID:20398413
Mechanism, Structure, and Inhibition of O-GlcNAc Processing Enzymes. PMID:20396401
Consumption of human milk oligosaccharides by gut-related microbes. PMID:20394371
Paenibacillus sp. strain E18 bifunctional xylanase-glucanase with a single catalytic domain. PMID:20382811
Functional states of homooligomers: insights from the evolution of glycosyltransferases. PMID:20381499
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. PMID:20376150
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. PMID:20368178
Bioinformatics and molecular modeling in glycobiology. PMID:20364395
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. PMID:20363958
Thermostable enzymes as biocatalysts in the biofuel industry. PMID:20359453
Structural analysis of Thermus thermophilus HB27 mannosyl-3-phosphoglycerate synthase provides evidence for a second catalytic metal ion and new insight into the retaining mechanism of glycosyltransferases. PMID:20356840
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. PMID:20348908
Interplay between Clostridium thermocellum family 48 and family 9 cellulases in cellulosomal versus noncellulosomal states. PMID:20348303
Self-poisoning of Mycobacterium tuberculosis by targeting GlgE in an alpha-glucan pathway. PMID:20305657
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. PMID:20237561
Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes. PMID:20212162
Mass spectrometric analysis of Ehrlichia chaffeensis tandem repeat proteins reveals evidence of phosphorylation and absence of glycosylation. PMID:20209062
Crystallization and preliminary X-ray crystallographic analysis of beta-galactosidase from Kluyveromyces lactis. PMID:20208165
GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems. PMID:20202206
Functional diversity of four glycoside hydrolase family 3 enzymes from the rumen bacterium Prevotella bryantii B14. PMID:20190048
Glycosylation of wall teichoic acid in Staphylococcus aureus by TarM. PMID:20185825
Structure and kinetic investigation of Streptococcus pyogenes family GH38 alpha-mannosidase. PMID:20140249
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PMID:20098679
Structural basis of substrate binding in WsaF, a rhamnosyltransferase from Geobacillus stearothermophilus. PMID:20097205
Sequence and structural analysis of the chitinase insertion domain reveals two conserved motifs involved in chitin-binding. PMID:20084296
Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium Xanthomonas campestris pv. campestris. PMID:20081036
Glycosidase inhibition: assessing mimicry of the transition state. PMID:20066263
Identification, characterization, and biosynthesis of a novel N-glycan modification in the fruiting body of the basidiomycete Coprinopsis cinerea. PMID:20061575
Crystallization and preliminary X-ray diffraction data of alpha-galactosidase from Saccharomyces cerevisiae. PMID:20057068
Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium. PMID:20054127
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. PMID:20018766
Structural hierarchy of regulatory elements in the folding and transport of an intestinal multidomain protein. PMID:19955176
Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii. PMID:19940244
Catalytic mechanism of human alpha-galactosidase. PMID:19940122
Identification of glycosyltransferase 8 family members as xylosyltransferases acting on O-glucosylated notch epidermal growth factor repeats. PMID:19940119
Purification, crystallization and preliminary X-ray analysis of beta-glucosidase from Kluyveromyces marxianus NBRC1777. PMID:19923748
Tertiary structure and characterization of a glycoside hydrolase family 44 endoglucanase from Clostridium acetobutylicum. PMID:19915043
A cytoplasmic prolyl hydroxylation and glycosylation pathway modifies Skp1 and regulates O2-dependent development in Dictyostelium. PMID:19914348
Cloning, expression in Pichia pastoris, and characterization of a thermostable GH5 mannan endo-1,4-beta-mannosidase from Aspergillus niger BK01. PMID:19912637
Molecular basis for galactosylation of core fucose residues in invertebrates: identification of caenorhabditis elegans N-glycan core alpha1,6-fucoside beta1,4-galactosyltransferase GALT-1 as a member of a novel glycosyltransferase family. PMID:19858195
Structures of two truncated phage-tail hyaluronate lyases from Streptococcus pyogenes serotype M1. PMID:19850999
Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action. PMID:19846561
Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes. PMID:19832970
Structural insight into mammalian sialyltransferases. PMID:19820709
Structural snapshots of heparin depolymerization by heparin lyase I. PMID:19801541
Mechanistic investigation of the endo-alpha-N-acetylgalactosaminidase from Streptococcus pneumoniae R6. PMID:19788271
A real-time fluorogenic assay for the visualization of glycoside hydrolase activity in planta. PMID:19783642
Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. PMID:19775243
Fungal bioconversion of lignocellulosic residues; opportunities & perspectives. PMID:19774110
Engineering of cyclodextrin glucanotransferases and the impact for biotechnological applications. PMID:19763564
Structural insights into glucan phosphatase dynamics using amide hydrogen-deuterium exchange mass spectrometry. PMID:19754155
Identifying genetic determinants needed to establish a human gut symbiont in its habitat. PMID:19748469
Remembering Mary (1917 to 2008): editorial introduction to the thematic series on the life and lifework of Mary Mandels, first lady of cellulase research. PMID:19723300
Human lysosomal alpha-mannosidases exhibit different inhibition and metal binding properties. PMID:19722277
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. PMID:19717629
The 1.9 a structure of human alpha-N-acetylgalactosaminidase: The molecular basis of Schindler and Kanzaki diseases. PMID:19683538
Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. PMID:19680555
A unique beta-1,2-mannosyltransferase of Thermotoga maritima that uses di-myo-inositol phosphate as the mannosyl acceptor. PMID:19648237
Cellulase production from Pseudoalteromonas sp. NO3 isolated from the sea squirt Halocynthia rorentzi. PMID:19639353
Evolution and biochemistry of family 4 glycosidases: implications for assigning enzyme function in sequence annotations. PMID:19625389
Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases. PMID:19608744
A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27. PMID:19608743
How sweet it is! Cell wall biogenesis and polysaccharide capsule formation in Cryptococcus neoformans. PMID:19575556
Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity in fungi and its implications for plant-fungal symbioses. PMID:19566942
Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. PMID:19553672
Carboxylic ester hydrolases from hyperthermophiles. PMID:19544040
A cell wall-degrading esterase of Xanthomonas oryzae requires a unique substrate recognition module for pathogenesis on rice. PMID:19525415
Insight into a strategy for attenuating AmpC-mediated beta-lactam resistance: structural basis for selective inhibition of the glycoside hydrolase NagZ. PMID:19499593
Activation of beta-glucan synthases by wall-bound purple acid phosphatase in tobacco cells. PMID:19493971
Characterization of three beta-galactoside phosphorylases from Clostridium phytofermentans: discovery of d-galactosyl-beta1->4-l-rhamnose phosphorylase. PMID:19491100
Crystallization and preliminary crystallographic analysis of beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893. PMID:19478450
Molecular analysis of a UDP-GlcNAc:polypeptide alpha-N-acetylglucosaminyltransferase implicated in the initiation of mucin-type O-glycosylation in Trypanosoma cruzi. PMID:19468051
Synthetic biology and biomass conversion: a match made in heaven? PMID:19454530
Bioprospecting metagenomes: glycosyl hydrolases for converting biomass. PMID:19450243
N-acetylglucosamine recognition by a family 32 carbohydrate-binding module from Clostridium perfringens NagH. PMID:19422833
Substrate specificity of streptococcal unsaturated glucuronyl hydrolases for sulfated glycosaminoglycan. PMID:19416976
The C-glycosylation of flavonoids in cereals. PMID:19411659
Crystallization and crystallographic analysis of Bacillus subtilis xylanase C. PMID:19407387
Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont. PMID:19403529
Characterization of the Corynebacterium glutamicum deltapimB' deltamgtA double deletion mutant and the role of Mycobacterium tuberculosis orthologues Rv2188c and Rv0557 in glycolipid biosynthesis. PMID:19395496
Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis. PMID:19384422
Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. PMID:19376920
Effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability. PMID:19374450
Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus. PMID:19346347
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. PMID:19341479
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. PMID:19321416
Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23. PMID:19304844
Molecular basis of arabinobio-hydrolase activity in phytopathogenic fungi: crystal structure and catalytic mechanism of Fusarium graminearum GH93 exo-alpha-L-arabinanase. PMID:19269961
Crystal structure of glycoside hydrolase family 55 {beta}-1,3-glucanase from the basidiomycete Phanerochaete chrysosporium. PMID:19193645
Streptococcus pneumoniae endohexosaminidase D, structural and mechanistic insight into substrate-assisted catalysis in family 85 glycoside hydrolases. PMID:19181667
Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. PMID:19175920
The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: a large deformation of a TIM barrel scaffold. PMID:19124470
http://dx.doi.org/10.1093/nar/gkt1178

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carbohydrate
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

classification
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

polysaccharide
metasource: Fairsharing.org
version: FAIRsharing.org: CAZy; The Carbohydrate-Active enZYmes Database; DOI: https://doi.org/10.25504/FAIRsharing.ntyq70; Last edited: April 26, 2021, 9:28 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

enzymes and enzyme nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

cazymes
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

carbohydrate binding module
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

carbohydrate esterase
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

catalytic binding
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

glycosidic bond
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

glycosidic hydrolase
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

glycosyl transferase
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

polysaccharide lyase
metasource: re3data.org
version: re3data.org: Carbohydrate-Active enZYmes Database; editing status 2019-01-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W88 last accessed: 2022-11-04

enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

carbohydrate classification enzyme polysaccharide metabolic and signaling pathways enzymes and enzyme nomenclature cazymes carbohydrate binding module carbohydrate esterase catalytic binding glycosidic bond glycosidic hydrolase glycosyl transferase polysaccharide lyase enzyme

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PULDB

The Plastics-Active Enzymes Database

GlycomeDB

CUPP

Web3 Unique Representation of Carbohydrate Structures

BRENDA

CSS - Carbohydrate Structure Suite

GTDB

CSA - Catalytic Site Atlas

Carbohydrate Structure Database

ThYme

MACiE

CLAE

ProCarbDB

SulfAtlas

Enzyme Portal

Bacterial CSDB (BCSDB)

IND-Enzymes

EzCatDB

MetaCyc