CUPP
Conserved Unique Peptide Patterns (CUPP) is a approach for sequence analysis employing conserved peptide patterns for determination of similarities between proteins. CUPP performs unsupervised clustering of proteins for formation of protein groups and can be used for fast annotation of enzyme protein family, subfamily and EC function of carbohydrate-active enzymes.
Description
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Conserved Unique Peptide Patterns (CUPP) is a approach for sequence analysis employing conserved peptide patterns for determination of similarities between proteins. CUPP performs unsupervised clustering of proteins for formation of protein groups and can be used for fast annotation of enzyme protein family, subfamily and EC function of carbohydrate-active enzymes.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
Webpage:
https://cupp.infoWebpage
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Publications:
Publications
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Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes
PMID: 32406917
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
Publications
More detailed information about this field from each metasource.
Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes
PMID: 32406917
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
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Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes
PubMed citations: 5.
5 articles citing: Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes
Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome. PMID:34814938
New Method for Identifying Fungal Kingdom Enzyme Hotspots from Genome Sequences. PMID:33799907
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues. PMID:33422151
Transcriptome Profiling-Based Analysis of Carbohydrate-Active Enzymes in Aspergillus terreus Involved in Plant Biomass Degradation. PMID:33123513
Comparative Characterization of Aspergillus Pectin Lyases by Discriminative Substrate Degradation Profiling. PMID:32850731
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Tags
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carbohydrates
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:21.082066
Tags
More detailed information about this field from each metasource.
carbohydrates
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
enzymes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:21.082066
carbohydrates small molecule enzyme model organisms dna
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