BioXpress
BioXpress is a curated gene expression and disease association database where the expression levels are mapped to genes.
Description
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BioXpress is a curated gene expression and disease association database where the expression levels are mapped to genes.
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
https://hive.biochemistry.gwu.edu/tools/bioxpress/Webpage
More detailed information about this field from each metasource.
https://hive.biochemistry.gwu.edu/tools/bioxpress/
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence:
Name: GNU General Public License (GPL) 3.0Licence name
More detailed information about this field from each metasource.
GNU General Public License (GPL) 3.0
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.gnu.org/licenses/gpl.html
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
PMID: 25819073
metasource: Fairsharing.org
version: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
PMID: 25819073
metasource: Fairsharing.org
version: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
PubMed citations: 47.
47 articles citing: BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
The Cancer Research Database (CRDB): Integrated Platform to Gain Statistical Insight Into the Correlation Between Cancer and COVID-19. PMID:35430561
Network-based cancer genomic data integration for pattern discovery. PMID:34886811
Non-Coding RNA-Based Biosensors for Early Detection of Liver Cancer. PMID:34440168
Molecular basis for RASSF10/NPM/RNF2 feedback cascade-mediated regulation of gastric cancer cell proliferation. PMID:34224728
Processing and Analysis of RNA-seq Data from Public Resources. PMID:33606253
The Ubiquitin Gene Expression Pattern and Sensitivity to UBB and UBC Knockdown Differentiate Primary 23132/87 and Metastatic MKN45 Gastric Cancer Cells. PMID:32751694
An enhanced chemopreventive effect of methyl donor S-adenosylmethionine in combination with 25-hydroxyvitamin D in blocking mammary tumor growth and metastasis. PMID:32714613
uPAR antibody (huATN-658) and Zometa reduce breast cancer growth and skeletal lesions. PMID:32337090
LINC00319-Mediated miR-3127 Repression Enhances Bladder Cancer Progression Through Upregulation of RAP2A. PMID:32194636
CancerLivER: a database of liver cancer gene expression resources and biomarkers. PMID:32147717
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data. PMID:32142370
Long noncoding RNA DLX6-AS1 promotes cell growth and invasiveness in bladder cancer via modulating the miR-223-HSP90B1 axis. PMID:31615303
Structure, regulation, and (patho-)physiological functions of the stress-induced protein kinase CK1 delta (CSNK1D). PMID:31376410
GENT2: an updated gene expression database for normal and tumor tissues. PMID:31296229
MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature. PMID:31217513
Identification of ESM1 overexpressed in head and neck squamous cell carcinoma. PMID:31073279
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer. PMID:30934003
Genome-wide DNA methylation differences according to oestrogen receptor beta status in colorectal cancer. PMID:30931802
Effective breast cancer combination therapy targeting BACH1 and mitochondrial metabolism. PMID:30842661
DDX39B promotes translation through regulation of pre-ribosomal RNA levels. PMID:30176153
The non-enzymatic RAS effector RASSF7 inhibits oncogenic c-Myc function. PMID:30139745
Interplay between human nucleolar GNL1 and RPS20 is critical to modulate cell proliferation. PMID:30061673
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. PMID:30053270
Review and Meta-Analyses of TAAR1 Expression in the Immune System and Cancers. PMID:29997511
KM-express: an integrated online patient survival and gene expression analysis tool for the identification and functional characterization of prognostic markers in breast and prostate cancers. PMID:29992322
Characterization of the Olfactory Receptor OR10H1 in Human Urinary Bladder Cancer. PMID:29867524
DEXTER: Disease-Expression Relation Extraction from Text. PMID:29860481
Unifying cancer and normal RNA sequencing data from different sources. PMID:29664468
DDX49 is an RNA helicase that affects translation by regulating mRNA export and the levels of pre-ribosomal RNA. PMID:29618122
E4BP4/NFIL3 modulates the epigenetically repressed RAS effector RASSF8 function through histone methyltransferases. PMID:29467226
Global Quantitative Proteomics reveal Deregulation of Cytoskeletal and Apoptotic Signalling Proteins in Oral Tongue Squamous Cell Carcinoma. PMID:29371635
Transcriptional signature of lymphoblastoid cell lines of BRCA1, BRCA2 and non-BRCA1/2 high risk breast cancer families. PMID:29108258
Musashi-2, a novel oncoprotein promoting cervical cancer cell growth and invasion, is negatively regulated by p53-induced miR-143 and miR-107 activation. PMID:29073938
Advancing Public Health Using Regulatory Science to Enhance Development and Regulation of Medical Products: Food and Drug Administration Research at the Center for Biologics Evaluation and Research. PMID:28660187
Statistical algorithms improve accuracy of gene fusion detection. PMID:28541529
iASPP induces EMT and cisplatin resistance in human cervical cancer through miR-20a-FBXL5/BTG3 signaling. PMID:28399926
Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids. PMID:28176830
Leucine Zipper Down-regulated in Cancer-1 (LDOC1) interacts with Guanine nucleotide binding protein-like 3-like (GNL3L) to modulate Nuclear Factor-kappa B (NF-κB) signaling during cell proliferation. PMID:27764577
ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer. PMID:27519173
HBP1-mediated Regulation of p21 Protein through the Mdm2/p53 and TCF4/EZH2 Pathways and Its Impact on Cell Senescence and Tumorigenesis. PMID:27129219
The Proton-Sensing G-Protein Coupled Receptor GPR4 Promotes Angiogenesis in Head and Neck Cancer. PMID:27078157
Identification of Epigenetic Biomarkers of Lung Adenocarcinoma through Multi-Omics Data Analysis. PMID:27042856
Impact of germline and somatic missense variations on drug binding sites. PMID:26810135
MERAV: a tool for comparing gene expression across human tissues and cell types. PMID:26626150
CMTM4 is frequently downregulated and functions as a tumour suppressor in clear cell renal cell carcinoma. PMID:26474560
The Disease Ontology: fostering interoperability between biological and clinical human disease-related data. PMID:26093607
Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. PMID:25841438
Tags:
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
next generation dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
next generation dna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: BioXpress; BioXpress; DOI: https://doi.org/10.25504/FAIRsharing.8bva0r; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression next generation dna sequencing rna
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