BioDare2 - Biological Data Repository
Names
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BioDare2 - Biological Data Repository
metasource: Fairsharing.org
version: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
BioDare2
metasource: Fairsharing.org
version: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Names
More detailed information about this field from each metasource.
BioDare2 - Biological Data Repository
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
BioDare2
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Names
More detailed information about this field from each metasource.
BioDare2 - Biological Data Repository
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
BioDare2
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
BioDare2 is a repository for circadian, biological data, providing a platform for data sharing and period analysis. The main features of BioDare2 are: fast period analysis, timeseries processing, attractive visualizations, simple data description and modern UI, all of it to assure the best user experience.
Description
More detailed information about this field from each metasource.
BioDare2 is a repository for circadian, biological data, providing a platform for data sharing and period analysis. The main features of BioDare2 are: fast period analysis, timeseries processing, attractive visualizations, simple data description and modern UI, all of it to assure the best user experience.
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Webpage:
https://biodare2.ed.ac.ukWebpage
More detailed information about this field from each metasource.
https://biodare2.ed.ac.uk
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence:
Name: Creative Commons Attribution 2.0 Generic (CC BY 2.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 2.0 Generic (CC BY 2.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/2.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Strengths and limitations of period estimation methods for circadian data
PMID: 24809473
metasource: Fairsharing.org
version: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
Strengths and limitations of period estimation methods for circadian data
PMID: 24809473
metasource: Fairsharing.org
version: FAIRsharing.org: BioDare2; BioDare2 - Biological Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.toIDed; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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Strengths and limitations of period estimation methods for circadian data
PubMed citations: 109.
109 articles citing: Strengths and limitations of period estimation methods for circadian data
Keeping time in the dark: Potato diel and circadian rhythmic gene expression reveals tissue-specific circadian clocks. PMID:35844780
Circadian-period variation underlies the local adaptation of photoperiodism in the short-day plant Lemna aequinoctialis. PMID:35800759
Family Members Additively Repress the Ectopic Expression of BASIC PENTACYSTEINE3 to Prevent Disorders in Arabidopsis Circadian Vegetative Development. PMID:35693178
A daily temperature rhythm in the human brain predicts survival after brain injury. PMID:35691613
Real-Time Measurement of Energy Metabolism Over Circadian Time Using Indirect Calorimetry-Enabled Metabolic Cages. PMID:35610435
Astrocytes sustain circadian oscillation and bidirectionally determine circadian period, but do not regulate circadian phase in the suprachiasmatic nucleus. PMID:35610047
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains. PMID:35475644
LuminoCell: a versatile and affordable platform for real-time monitoring of luciferase-based reporters. PMID:35440493
Interaction between photoperiod and variation in circadian rhythms in tomato. PMID:35395725
Excess S-adenosylmethionine inhibits methylation via catabolism to adenine. PMID:35383287
Multiple metals influence distinct properties of the Arabidopsis circadian clock. PMID:35381003
Mutations that alter Arabidopsis flavonoid metabolism affect the circadian clock. PMID:35218268
A Point Mutation in Phytochromobilin synthase Alters the Circadian Clock and Photoperiodic Flowering of Medicago truncatula. PMID:35161220
Environmental and Circadian Regulation Combine to Shape the Rhythmic Selenoproteome. PMID:35159150
A spatio-temporal model to reveal oscillator phenotypes in molecular clocks: Parameter estimation elucidates circadian gene transcription dynamics in single-cells. PMID:34919546
Time-restricted feeding alters the efficiency of mammary tumor growth. PMID:34894935
Plant circadian clock control of Medicago truncatula nodulation via regulation of nodule cysteine-rich peptides. PMID:34850882
Hundreds of LncRNAs Display Circadian Rhythmicity in Zebrafish Larvae. PMID:34831396
Mistimed malaria parasites re-synchronize with host feeding-fasting rhythms by shortening the duration of intra-erythrocytic development. PMID:34778983
Arabidopsis thaliana PRR7 Provides Circadian Input to the CCA1 Promoter in Shoots but not Roots. PMID:34733306
Nitecap: An Exploratory Circadian Analysis Web Application. PMID:34724846
Agrobacterium-Mediated Seedling Transformation to Measure Circadian Rhythms in Arabidopsis. PMID:34674167
High Spatial Resolution Luciferase Imaging of the Arabidopsis thaliana Circadian Clock. PMID:34674166
Period Estimation and Rhythm Detection in Timeseries Data Using BioDare2, the Free, Online, Community Resource. PMID:34674164
A photoregulatory mechanism of the circadian clock in Arabidopsis. PMID:34650267
Deep-coverage spatiotemporal proteome of the picoeukaryote Ostreococcus tauri reveals differential effects of environmental and endogenous 24-hour rhythms. PMID:34593975
Structure-based design and classifications of small molecules regulating the circadian rhythm period. PMID:34531414
Single-cell transcriptomics of suprachiasmatic nuclei reveal a Prokineticin-driven circadian network. PMID:34487375
Identification of Rhythmically Expressed LncRNAs in the Zebrafish Pineal Gland and Testis. PMID:34360576
Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function. PMID:34353905
A comparative study on the circadian rhythm of the electrical signals of Broussonetia papyrifera and Morus alba. PMID:34227908
Circadian misalignment by environmental light/dark shifting causes circadian disruption in colon. PMID:34086699
Circadian Clock Control of Translation Initiation Factor eIF2α Activity Requires eIF2γ-Dependent Recruitment of Rhythmic PPP-1 Phosphatase in Neurospora crassa. PMID:34006661
A continuous flow cell culture system for precision cell stimulation and time-resolved profiling of cell secretion. PMID:33887234
A Global Search for novel Transcription Factors impacting the Neurospora crassa Circadian Clock. PMID:33792687
Daily rewiring of a neural circuit generates a predictive model of environmental light. PMID:33762336
Magnesium maintains the length of the circadian period in Arabidopsis. PMID:33721908
Genetic loci mediating circadian clock output plasticity and crop productivity under barley domestication. PMID:33595846
Exogenous melatonin improves growth in hulless barley seedlings under cold stress by influencing the expression rhythms of circadian clock genes. PMID:33552735
Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities. PMID:33547239
A circadian clock in a nonphotosynthetic prokaryote. PMID:33523996
A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes. PMID:33416493
The risks of using the chi-square periodogram to estimate the period of biological rhythms. PMID:33406069
The Cell-Autonomous Clock of VIP Receptor VPAC2 Cells Regulates Period and Coherence of Circadian Behavior. PMID:33234609
Osmotic stress alters circadian cytosolic Ca2+ oscillations and OSCA1 is required in circadian gated stress adaptation. PMID:33100175
Zebrafish Circadian Clock Entrainment and the Importance of Broad Spectral Light Sensitivity. PMID:32922310
Circadian control of brain glymphatic and lymphatic fluid flow. PMID:32879313
Tracking leukemic T-cell transcriptional dynamics in vivo with a blood-based reporter assay. PMID:32710494
Nobiletin affects circadian rhythms and oncogenic characteristics in a cell-dependent manner. PMID:32706791
The VIP-VPAC2 neuropeptidergic axis is a cellular pacemaking hub of the suprachiasmatic nucleus circadian circuit. PMID:32636383
Chemical modulation of circadian rhythms and assessment of cellular behavior via indirubin and derivatives. PMID:32475398
Circadian Clock Regulation of Developmental Time in the Kidney. PMID:32433970
Methylation deficiency disrupts biological rhythms from bacteria to humans. PMID:32376902
The coenzyme thiamine diphosphate displays a daily rhythm in the Arabidopsis nucleus. PMID:32372067
Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation. PMID:32355000
Quantitative live imaging of Venus::BMAL1 in a mouse model reveals complex dynamics of the master circadian clock regulator. PMID:32352975
Light and Temperature Synchronizes Locomotor Activity in the Linden Bug, Pyrrhocoris apterus. PMID:32300305
The circadian clock and darkness control natural competence in cyanobacteria. PMID:32245943
The Circadian Clock Influences the Long-Term Water Use Efficiency of Arabidopsis. PMID:32179629
Gut Microbial Metabolites Induce Changes in Circadian Oscillation of Clock Gene Expression in the Mouse Embryonic Fibroblasts. PMID:32155689
High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains. PMID:32074270
Kalanchoë PPC1 Is Essential for Crassulacean Acid Metabolism and the Regulation of Core Circadian Clock and Guard Cell Signaling Genes. PMID:32051209
Recent advances in understanding regulation of the Arabidopsis circadian clock by local cellular environment. PMID:32047621
CIRCADA: Shiny Apps for Exploration of Experimental and Synthetic Circadian Time Series with an Educational Emphasis. PMID:31986956
CikA, an Input Pathway Component, Senses the Oxidized Quinone Signal to Generate Phase Delays in the Cyanobacterial Circadian Clock. PMID:31983264
Receptor kinase FERONIA regulates flowering time in Arabidopsis. PMID:31948398
Long-term monitoring of bioluminescence circadian rhythms of cells in a transgenic Arabidopsis mesophyll protoplast culture. PMID:31819736
Combining GAL4 GFP enhancer trap with split luciferase to measure spatiotemporal promoter activity in Arabidopsis. PMID:31692146
Comprehensive mapping of abiotic stress inputs into the soybean circadian clock. PMID:31676549
Analysis of the circadian transcriptome of the Antarctic krill Euphausia superba. PMID:31554872
GIGANTEA recruits the UBP12 and UBP13 deubiquitylases to regulate accumulation of the ZTL photoreceptor complex. PMID:31434902
Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana. PMID:31415556
Cryptochromes integrate green light signals into the circadian system. PMID:31410859
Measuring Phytochrome-Dependent Light Input to the Plant Circadian Clock. PMID:31317413
Expanding the bioluminescent reporter toolkit for plant science with NanoLUC. PMID:31316580
A high-throughput delayed fluorescence method reveals underlying differences in the control of circadian rhythms in Triticum aestivum and Brassica napus. PMID:31139241
Acute exposure to low-level light at night is sufficient to induce neurological changes and depressive-like behavior. PMID:31138889
A photometric stereo-based 3D imaging system using computer vision and deep learning for tracking plant growth. PMID:31127811
Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. PMID:31105011
Insulin/IGF-1 Drives PERIOD Synthesis to Entrain Circadian Rhythms with Feeding Time. PMID:31030999
Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function. PMID:30950791
Telling the Time with a Broken Clock: Quantifying Circadian Disruption in Animal Models. PMID:30901884
Vasoactive intestinal peptide controls the suprachiasmatic circadian clock network via ERK1/2 and DUSP4 signalling. PMID:30710088
Cell-autonomous clock of astrocytes drives circadian behavior in mammals. PMID:30630934
Pivotal Roles of Cryptochromes 1a and 2 in Tomato Development and Physiology. PMID:30541876
Translational switching of Cry1 protein expression confers reversible control of circadian behavior in arrhythmic Cry-deficient mice. PMID:30487216
Daily humidity oscillation regulates the circadian clock to influence plant physiology. PMID:30327472
Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability. PMID:30120083
Targeted Recruitment of the Basal Transcriptional Machinery by LNK Clock Components Controls the Circadian Rhythms of Nascent RNAs in Arabidopsis. PMID:29618629
Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals. PMID:29403507
Monitoring circadian rhythms of individual cells in plants. PMID:29204752
Experimental and Mathematical Analyses Relating Circadian Period and Phase of Entrainment in Neurospora crassa. PMID:29183256
Phosphorylation of Phosphoenolpyruvate Carboxylase Is Essential for Maximal and Sustained Dark CO2 Fixation and Core Circadian Clock Operation in the Obligate Crassulacean Acid Metabolism Species Kalanchoë fedtschenkoi. PMID:28887405
Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes. PMID:28493880
Astrocytes Control Circadian Timekeeping in the Suprachiasmatic Nucleus via Glutamatergic Signaling. PMID:28285822
Bipolar mood cycles and lunar tidal cycles. PMID:28115741
The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion. PMID:27856696
Circadian rhythms identified in Caenorhabditis elegans by in vivo long-term monitoring of a bioluminescent reporter. PMID:27849618
Combined Pharmacological and Genetic Manipulations Unlock Unprecedented Temporal Elasticity and Reveal Phase-Specific Modulation of the Molecular Circadian Clock of the Mouse Suprachiasmatic Nucleus. PMID:27605609
Heterogeneity of cellular circadian clocks in intact plants and its correction under light-dark cycles. PMID:27453946
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. PMID:26468131
Silencing Nicotiana attenuata LHY and ZTL alters circadian rhythms in flowers. PMID:26439540
Circadian systems biology: When time matters. PMID:26288701
TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation. PMID:26019715
A comparison of high-throughput techniques for assaying circadian rhythms in plants. PMID:25987891
Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PMID:25793520
Measuring synchrony in the mammalian central circadian circuit. PMID:25707270
Improving the accuracy of expression data analysis in time course experiments using resampling. PMID:25344112
Circadian regulation of myocardial sarcomeric Titin-cap (Tcap, telethonin): identification of cardiac clock-controlled genes using open access bioinformatics data. PMID:25121604
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