Experimental data repository for KInetic MOdels of biological SYStems
Names
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Experimental data repository for KInetic MOdels of biological SYStems
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
KiMoSys
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Kinetic models of biological systems
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
kimosys
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Names
More detailed information about this field from each metasource.
Experimental data repository for KInetic MOdels of biological SYStems
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
KiMoSys
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Kinetic models of biological systems
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
kimosys
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
Other names: KiMoSys, Kinetic models of biological systems, kimosys
Names
More detailed information about this field from each metasource.
Experimental data repository for KInetic MOdels of biological SYStems
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
KiMoSys
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Kinetic models of biological systems
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
kimosys
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme measurements in order to build ODE-based kinetic model. It is designed to search, exchange and disseminate experimental data (and associated kinetic models) for the systems modeling community.
Description
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KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme measurements in order to build ODE-based kinetic model. It is designed to search, exchange and disseminate experimental data (and associated kinetic models) for the systems modeling community.
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
KiMoSys, a web application for quantitative KInetic MOdels of biological SYStems. Kinetic models, with the aim to understand and subsequently design the metabolism of organism of interest are constructed iteratively and require accurate experimental data for both the generation and verification of hypotheses. Therefore, there is a growing requirement for exchanging experimental data and models between the systems biology community, and to automate as much as possible the kinetic model building, editing, simulation and analysis steps.
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
Web-based repository of experimental data for KInetic MOdels of biological SYStems.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
Webpage:
http://www.kimosys.orgWebpage
More detailed information about this field from each metasource.
http://www.kimosys.org
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://kimosys.org/
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
GPL-2.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://www.kimosys.org/documentation#17
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
Publications:
Publications
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KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
PMID: 25115331
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
PMID: 33247931
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
PMID: 25115331
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
PMID: 33247931
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
PubMed citations: 7.
7 articles citing: KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
Diverse classes of constraints enable broader applicability of a linear programming-based dynamic metabolic modeling framework. PMID:35031616
KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling. PMID:33247931
SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology. PMID:32211200
What incentives increase data sharing in health and medical research? A systematic review. PMID:29451561
Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. PMID:28555150
SBtab: a flexible table format for data exchange in systems biology. PMID:27153616
Metabonomic profiles delineate potential role of glutamate-glutamine cycle in db/db mice with diabetes-associated cognitive decline. PMID:27090642 -
KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
PubMed citations: 1.
1 articles citing: KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
Predicting plant growth response under fluctuating temperature by carbon balance modelling. PMID:35210545
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enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metabolite
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
reaction data
metasource: Fairsharing.org
version: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
accessible dynamic data
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
biotechnology
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
dynamic modeling
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
enzyme measurements
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
flux data
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
kinetic models
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metabolite concentrations
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metabolomics
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
systems biology
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
drug metabolism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
medicines research and development
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
Tags
More detailed information about this field from each metasource.
enzyme
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metabolite
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
reaction data
metasource: Fairsharing.orgversion: FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
accessible dynamic data
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
biotechnology
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
dynamic modeling
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
enzyme measurements
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
flux data
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
kinetic models
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metabolite concentrations
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metabolomics
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
systems biology
metasource: re3data.orgversion: re3data.org: Kinetic models of biological systems; editing status 2018-09-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3864V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:08.915752
drug metabolism
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
medicines research and development
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:08.915752
enzyme metabolite reaction data accessible dynamic data biotechnology dynamic modeling enzyme measurements flux data kinetic models metabolite concentrations metabolomics systems biology drug metabolism medicines research and development
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