Small angle scattering biological data bank

Names

More detailed information about this field from each metasource. ×

Small angle scattering biological data bank

metasource: Fairsharing.org
version: FAIRsharing.org: SASBDB; Small angle scattering biological data bank; DOI: https://doi.org/10.25504/FAIRsharing.i1F3Hb; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

---

SASBDB

metasource: Fairsharing.org
version: FAIRsharing.org: SASBDB; Small angle scattering biological data bank; DOI: https://doi.org/10.25504/FAIRsharing.i1F3Hb; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

---

Small Angle Scattering Biological Data Bank

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

Close

Other names: SASBDB, Small Angle Scattering Biological Data Bank

Curated repository for small angle scattering data and models. SASBDB contains X-ray (SAXS) and neutron (SANS) scattering data from biological macromolecules in solution.

Webpage:

Licence:

Publications:

Publications

More detailed information about this field from each metasource. ×

SASBDB, a repository for biological small-angle scattering data
PMID: 25352555

metasource: Fairsharing.org
version: FAIRsharing.org: SASBDB; Small angle scattering biological data bank; DOI: https://doi.org/10.25504/FAIRsharing.i1F3Hb; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

---

http://dx.doi.org/10.1093/nar/gku1047

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Close

• SASBDB, a repository for biological small-angle scattering data PubMed citations: 123.

  123 articles citing: SASBDB, a repository for biological small-angle scattering data

  ×

  Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. PMID:35729566

  ---

  A MademoiseLLE domain binding platform links the key RNA transporter to endosomes. PMID:35727840

  ---

  Structural Characterization of the Full-Length Anti-CD20 Antibody Rituximab. PMID:35480889

  ---

  Integration of Experimental Data and Use of Automated Fitting Methods in Developing Protein Force Fields. PMID:35382231

  ---

  Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. PMID:35273347

  ---

  Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach. PMID:35137487

  ---

  Experimental Evidence of Intrinsic Disorder and Amyloid Formation by the Henipavirus W Proteins. PMID:35055108

  ---

  An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans-cleaving Neurospora Varkud Satellite ribozyme. PMID:34718697

  ---

  Identification of a Region in the Common Amino-terminal Domain of Hendra Virus P, V, and W Proteins Responsible for Phase Transition and Amyloid Formation. PMID:34572537

  ---

  Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. PMID:34529927

  ---

  pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread. PMID:34398933

  ---

  Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst. PMID:34094357

  ---

  From integrative structural biology to cell biology. PMID:33957123

  ---

  Rational thermostabilisation of four-helix bundle dimeric de novo proteins. PMID:33824364

  ---

  Conjuring up a ghost: structural and functional characterization of FhuF, a ferric siderophore reductase from E. coli. PMID:33559753

  ---

  SHP2 Nuclear/Cytoplasmic Trafficking in Granulosa Cells Is Essential for Oocyte Meiotic Resumption and Maturation. PMID:33553147

  ---

  Interdomain Flexibility of Chikungunya Virus nsP2 Helicase-Protease Differentially Influences Viral RNA Replication and Infectivity. PMID:33328310

  ---

  Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats. PMID:33296386

  ---

  Ensemble description of the intrinsically disordered N-terminal domain of the Nipah virus P/V protein from combined NMR and SAXS. PMID:33177626

  ---

  Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR. PMID:32974652

  ---

  Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. PMID:32968135

  ---

  RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression. PMID:32966346

  ---

  Characterization of the nucleotide-binding domain NsrF from the BceAB-type ABC-transporter NsrFP from the human pathogen Streptococcus agalactiae. PMID:32938989

  ---

  Architecture and functional dynamics of the pentafunctional AROM complex. PMID:32632294

  ---

  Integrated Structural Modeling of Full-Length LRH-1 Reveals Inter-domain Interactions Contribute to Receptor Structure and Function. PMID:32433991

  ---

  An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions. PMID:32415234

  ---

  Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex. PMID:32391791

  ---

  The HDOCK server for integrated protein-protein docking. PMID:32269383

  ---

  Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics. PMID:32119546

  ---

  Structural basis of cell-surface signaling by a conserved sigma regulator in Gram-negative bacteria. PMID:32107313

  ---

  Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to Gαi1. PMID:32103024

  ---

  Model Reconstruction from Small-Angle X-Ray Scattering Data Using Deep Learning Methods. PMID:32092702

  ---

  Obtaining Tertiary Protein Structures by the ab Initio Interpretation of Small Angle X-ray Scattering Data. PMID:32023061

  ---

  Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution. PMID:31919376

  ---

  Conformational States of Exchange Protein Directly Activated by cAMP (EPAC1) Revealed by Ensemble Modeling and Integrative Structural Biology. PMID:31877746

  ---

  Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition. PMID:31875226

  ---

  SAXSDom: Modeling multidomain protein structures using small-angle X-ray scattering data. PMID:31860156

  ---

  Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. PMID:31842432

  ---

  An intrinsically disordered proteins community for ELIXIR. PMID:31824649

  ---

  Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431

  ---

  Combination of SAXS and Protein Painting Discloses the Three-Dimensional Organization of the Bacterial Cysteine Synthase Complex, a Potential Target for Enhancers of Antibiotic Action. PMID:31640223

  ---

  Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes. PMID:31601460

  ---

  Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition. PMID:31586407

  ---

  Aldehyde-alcohol dehydrogenase forms a high-order spirosome architecture critical for its activity. PMID:31586059

  ---

  Reporting on the future of integrative structural biology ORAU workshop. PMID:31585877

  ---

  SASBDB: Towards an automatically curated and validated repository for biological scattering data. PMID:31576635

  ---

  Structural and mechanistic insights into the interaction of the circadian transcription factor BMAL1 with the KIX domain of the CREB-binding protein. PMID:31515273

  ---

  Interaction of the tetratricopeptide repeat domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory Pγ subunit of phosphodiesterase 6. PMID:31488544

  ---

  Defects in t6A tRNA modification due to GON7 and YRDC mutations lead to Galloway-Mowat syndrome. PMID:31481669

  ---

  Solution structure and flexibility of the condensin HEAT-repeat subunit Ycg1. PMID:31350339

  ---

  Archiving and disseminating integrative structure models. PMID:31278630

  ---

  Solution Structure of SpoIVB Reveals Mechanism of PDZ Domain-Regulated Protease Activity. PMID:31244791

  ---

  Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology. PMID:31204190

  ---

  Quaternary structure of α-amino-β-carboxymuconate-ϵ-semialdehyde decarboxylase (ACMSD) controls its activity. PMID:31189654

  ---

  Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. PMID:31088917

  ---

  Unique structural features of a bacterial autotransporter adhesin suggest mechanisms for interaction with host macromolecules. PMID:31036849

  ---

  Structure, dynamics and roX2-lncRNA binding of tandem double-stranded RNA binding domains dsRBD1,2 of Drosophila helicase Maleless. PMID:30805612

  ---

  Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. PMID:30792490

  ---

  Quantitative live-cell imaging and 3D modeling reveal critical functional features in the cytosolic complex of phagocyte NADPH oxidase. PMID:30630949

  ---

  A Metastable Contact and Structural Disorder in the Estrogen Receptor Transactivation Domain. PMID:30581045

  ---

  Structural and Biochemical Characterization of Aldehyde Dehydrogenase 12, the Last Enzyme of Proline Catabolism in Plants. PMID:30580036

  ---

  Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer. PMID:30529746

  ---

  CH2 domain orientation of human immunoglobulin G in solution: Structural comparison of glycosylated and aglycosylated Fc regions using small-angle X-ray scattering. PMID:30513259

  ---

  Mechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2. PMID:30375376

  ---

  SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. PMID:30371978

  ---

  Protein Data Bank: the single global archive for 3D macromolecular structure data. PMID:30357364

  ---

  The molecular basis of protein toxin HicA-dependent binding of the protein antitoxin HicB to DNA. PMID:30337369

  ---

  The role of small-angle scattering in structure-based screening applications. PMID:30306530

  ---

  OCP-FRP protein complex topologies suggest a mechanism for controlling high light tolerance in cyanobacteria. PMID:30250028

  ---

  Human MICAL1: Activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8. PMID:30242933

  ---

  Searching for 3D structural models from a library of biological shapes using a few 2D experimental images. PMID:30208849

  ---

  Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids. PMID:30197181

  ---

  NAD+ promotes assembly of the active tetramer of aldehyde dehydrogenase 7A1. PMID:30184263

  ---

  Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains. PMID:30166540

  ---

  Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". PMID:30166461

  ---

  Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control. PMID:29996828

  ---

  Small but large enough: structural properties of armless mitochondrial tRNAs from the nematode Romanomermis culicivorax. PMID:29986062

  ---

  Redox Modulation of Oligomeric State in Proline Utilization A. PMID:29925020

  ---

  Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions. PMID:29874600

  ---

  Structural biology data archiving - where we are and what lies ahead. PMID:29749603

  ---

  Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data. PMID:29739979

  ---

  Structure and hydrodynamics of a DNA G-quadruplex with a cytosine bulge. PMID:29718405

  ---

  UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics. PMID:29718313

  ---

  Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133

  ---

  An N-terminally truncated form of cyclic GMP-dependent protein kinase Iα (PKG Iα) is monomeric and autoinhibited and provides a model for activation. PMID:29602907

  ---

  Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions. PMID:29535188

  ---

  Determination of protein oligomeric structure from small-angle X-ray scattering. PMID:29352739

  ---

  Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors. PMID:29276036

  ---

  Structural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase. PMID:29235475

  ---

  A novel Porphyromonas gingivalis enzyme: An atypical dipeptidyl peptidase III with an ARM repeat domain. PMID:29190734

  ---

  PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160

  ---

  Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials. PMID:29073575

  ---

  New tools and functions in data-out activities at Protein Data Bank Japan (PDBj). PMID:28815765

  ---

  Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20. PMID:28724964

  ---

  A shape-shifting redox foldase contributes to Proteus mirabilis copper resistance. PMID:28722010

  ---

  Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure. PMID:28710792

  ---

  Interactions between LHX3- and ISL1-family LIM-homeodomain transcription factors are conserved in Caenorhabditis elegans. PMID:28676648

  ---

  Skeletal Dysplasia Mutations Effect on Human Filamins' Structure and Mechanosensing. PMID:28652603

  ---

  Conformational plasticity and evolutionary analysis of the myotilin tandem Ig domains. PMID:28638118

  ---

  Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. PMID:28573592

  ---

  Combining NMR and small angle X-ray scattering for the study of biomolecular structure and dynamics. PMID:28501583

  ---

  Human βB2-Crystallin Forms a Face-en-Face Dimer in Solution: An Integrated NMR and SAXS Study. PMID:28238532

  ---

  The Shigella Virulence Factor IcsA Relieves N-WASP Autoinhibition by Displacing the Verprolin Homology/Cofilin/Acidic (VCA) Domain. PMID:27881679

  ---

  Engineering a trifunctional proline utilization A chimaera by fusing a DNA-binding domain to a bifunctional PutA. PMID:27742866

  ---

  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments. PMID:27711050

  ---

  Assessing heterogeneity in oligomeric AAA+ machines. PMID:27669691

  ---

  Intrinsic Disorder of the C-Terminal Domain of Drosophila Methoprene-Tolerant Protein. PMID:27657508

  ---

  A Structure-free Method for Quantifying Conformational Flexibility in proteins. PMID:27358108

  ---

  Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells. PMID:27300509

  ---

  Analysis of self-assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus. PMID:27270294

  ---

  Sampling Enrichment toward Target Structures Using Hybrid Molecular Dynamics-Monte Carlo Simulations. PMID:27227775

  ---

  X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism. PMID:27227414

  ---

  Structure of ThiM from Vitamin B1 biosynthetic pathway of Staphylococcus aureus - Insights into a novel pro-drug approach addressing MRSA infections. PMID:26960569

  ---

  Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering. PMID:26739383

  ---

  Structural Characterization of the Extracellular Domain of CASPR2 and Insights into Its Association with the Novel Ligand Contactin1. PMID:26721881

  ---

  RAID3--An interleukin-6 receptor-binding aptamer with post-selective modification-resistant affinity. PMID:26383776

  ---

  Flexible Structure of Peptide-Bound Filamin A Mechanosensor Domain Pair 20-21. PMID:26322797

  ---

  Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease. PMID:26161660

  ---

  Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. PMID:26095030

  ---

  A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems. PMID:25995844

  ---

  pyDockSAXS: protein-protein complex structure by SAXS and computational docking. PMID:25897115

  ---

  WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics. PMID:25855813

  ---

  The 2015 Nucleic Acids Research Database Issue and molecular biology database collection. PMID:25593347
• http://dx.doi.org/10.1093/nar/gku1047

Tags:

Tags

More detailed information about this field from each metasource. ×

protein structure

metasource: Fairsharing.org
version: FAIRsharing.org: SASBDB; Small angle scattering biological data bank; DOI: https://doi.org/10.25504/FAIRsharing.i1F3Hb; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

structure databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

petra iii

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

---

sas

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

---

saxs beamline p12

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

---

small angle scattering

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

---

small angle x-ray scattering

metasource: re3data.org
version: re3data.org: SASBDB; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36V1N last accessed: 2022-11-04

Close

protein structure structure petra iii sas saxs beamline p12 small angle scattering small angle x-ray scattering