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MoDEL

Names
More detailed information about this field from each metasource.

MoDEL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

model
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Other names: model

Names

More detailed information about this field from each metasource.

MoDEL

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

model

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Database of protein Molecular Dynamics simulations, with 1800 trajectories representing different structural clusters of the PDB.

Description

More detailed information about this field from each metasource.

Database of protein Molecular Dynamics simulations, with 1800 trajectories representing different structural clusters of the PDB.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Webpage:

http://mmb.irbbarcelona.org/MoDEL

Webpage

More detailed information about this field from each metasource.

http://mmb.irbbarcelona.org/MoDEL

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1016/j.str.2010.07.013
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

http://dx.doi.org/10.1016/j.str.2010.07.013

Tags:

Tags
More detailed information about this field from each metasource.

molecular dynamics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

molecular dynamics

More to explore:

1/20

Big Data Nucleic Acid Simulations Database

Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL data ...

LIMONADA

Limonada (Lipid Membrane Open Network And Database) is a database dedicated to the simulation of biological membranes. limonada intends to provide an open library of membranes, along with the descrip ...

PMut Data Repository

PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor ( ...

GPCRmd

GPCRmd uncovers the dynamics of the 3D-GPCRome. The online resource for GPCR simulations. GPCRmd is an online platform with web-based visualization capabilities and a comprehensive analysis toolbox ...

sc-PDB

Potential drug-binding sites in protein structures from the PDB

DSMM - a Database of Simulated Molecular Motions

DSMM is a Database of Simulated Molecular Motions. This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM is accessibl ...

Biological Dynamics Markup Language

Biological Dynamics Markup Language is an open unified format for representing quantitative data of biological dynamics. BDML can describe a wide variety of spatiotemporal dynamics of biological objec ...

Model Archive

The Model Archive provides a stable archive for computational macro-molecular models published in the scientific literature. The model archive provides a unique stable accession code (DOI) for each de ...

NeuroML

NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication i ...

Automated Topology Builder (ATB)

The Automated Topology Builder (ATB) and Repository is intended to facilitate the development of molecular force fields for Molecular Dynamics or Monte Carlo simulations of biomolecular systems. Appli ...

SWISS-MODEL Repository of 3D protein structure models

The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for protein sequences of selected model organisms.

DNAtraffic

A database for systems biology of DNA dynamics during the cell life.

WDDD - Worm Developmental Dynamics Database

Worm Developmental Dynamics Database (WDDD) stores a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos with single genes silenced by RNA-media ...

Database of Protein Disorder

The Database of Protein Disorder (DisProt) is a curated database that provides information about intrinsically disordered proteins that lack fixed 3D structure in their putatively native states, eithe ...

piSite

Database of Protein Interaction Sites using multiple binding states in PDB

Worm Developmental Dynamics Database

This database is a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos when each of all essential embryonic genes is silenced individually by RN ...

PCDB

Protein Conformational Diversity database

PDB_REDO databank

The PDB_REDO databank contains alternative (in many cases higher quality) versions of Protein Data Bank (PDB) structure models that were optimised by model refinement and rebuilding. The structure mo ...

CDDB

Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is ...

CSS - Carbohydrate Structure Suite

Carbohydrate 3D structures derived from the PDB

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine

MoDEL Names More detailed information about this field from each metasource. × MoDEL metasource: bio.tools version: extracted_at: 2022-11-04T11:34:57.778882 model metasource: bio.tools version: extracted_at: 2022-11-04T11:34:57.778882 Close

Webpage:

Publications: Publications More detailed information about this field from each metasource. × http://dx.doi.org/10.1016/j.str.2010.07.013 metasource: bio.tools version: extracted_at: 2022-11-04T11:34:57.778882 Close

Tags: Tags More detailed information about this field from each metasource. × molecular dynamics metasource: bio.tools version: extracted_at: 2022-11-04T11:34:57.778882 Close

More to explore:

1/20

Big Data Nucleic Acid Simulations Database

LIMONADA

PMut Data Repository

GPCRmd

sc-PDB

DSMM - a Database of Simulated Molecular Motions

Biological Dynamics Markup Language

Model Archive

NeuroML

Automated Topology Builder (ATB)

SWISS-MODEL Repository of 3D protein structure models

DNAtraffic

WDDD - Worm Developmental Dynamics Database

Database of Protein Disorder

piSite

Worm Developmental Dynamics Database

PCDB

PDB_REDO databank

CDDB

CSS - Carbohydrate Structure Suite

MoDEL

Names
More detailed information about this field from each metasource.

MoDEL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

model
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1016/j.str.2010.07.013
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882

Tags:

Tags
More detailed information about this field from each metasource.

molecular dynamics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:57.778882