Tag: protein localization and targeting

MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondin ...

LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.

This resource is a collection of all proteins identified to be localized on kinetochore, centrosome, midbody, telomere and spindle from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musc ...

Protein subcellular localization (SCL) is important for understanding protein function, genome annotation, and aids identification of potential cell surface diagnostic markers, drug targets, or vaccine components. PSORTdb comprises ePSORTdb, a manual ...

The aim of PEROXISOME database (PeroxisomeDB) is to gather, organise and integrate curated information on peroxisomal genes, their encoded proteins, their molecular function and metabolic pathway they belong to, and their related disorders.

CentrosomeDB is a collection of human and drosophila centrosomal genes that were reported in the literature and other sources. The database offers the possibility to study the evolution, function, and structure of the centrosome. They have compiled i ...

Experimental annotations of localization for Homo sapiens and Arabidopsis thaliana

The TransMembrane Protein Helix-Packing Database (TMPad) is an integrated repository of experimentally determined structural folds derived from helix-helix interactions in alpha-helical membrane proteins. TMPad includes geometric descriptors of helix ...

A web based database of Transmembrane Helices in Genome Sequences.

Topology Data Bank of transmembrane proteins

A database of single-pass membrane proteins

Secreted proteins from human, mouse and rat

Nuclear matrix associated proteins database

eSLDB (eukaryotic Subcellular Localization DataBase) collects the annotations of subcellular localization of eukaryotic proteomes. For each sequence, the database lists localization obtained adopting three different approaches: 1) experimentally dete ...

NURSA is a resource within which bioinformatic and bench research efforts in the field of nuclear receptors can be pursued in a synergistic and multidisciplinary approach, using a common technological platform. The primary directive of the NURSA prog ...

The NPD is a curated database that contains information on more than 1200 vertebrate proteins that are thought, or are known, to localise to the cell nucleus. Each entry is annotated with information on predicted protein size and isoelectric point, a ...

NLSdb is a database of nuclear localization signals (NLSs)and of nuclear proteins.NLSs are short stretches of residues mediating transport of nuclear proteins into the nucleus.The database contains 114 experimentally determined NLSs that were obtaine ...

The Arabidopsis Subcellular Database (SUBA, http://suba.plantenergy.uwa.edu.au) is maintained by the ARC Centre of Excellence in Plant Energy Biology at The University of Western Australia. The database contains publicly available protein subcellular ...

Protein export from the nucleus is often mediated by a Leucine-rich nuclear export signal (NES) consisting of 4-5 hydrophobic residues within a region of approximately 10 amino acids. Many Leucine-rich NESs have been identified and reported in litera ...

The Nucleolar Proteome Database (NOPdb) archives data on more than 700 proteins that were identified by multiple mass spectrometry (MS) analyses from highly purified preparations of human nucleoli, the most prominent nuclear organelle. Each protein e ...

OGRe is a relational database containing information on completely sequenced animal mitochondrial genomes. It currently contains 473 species. This is the full set of complete metazoan mitochondrial genomes available as of July 2004. The structure of ...

The Human Intermediate Filament Database (http://www.interfil.org) was initiated by the Human Genetics Unit, University of Dundee in 2001 and was revised by the Centre for Molecular Medicine and the Bioinformatics Institute in Singapore in 2006, from ...