HOMOLENS

Names

More detailed information about this field from each metasource. ×

HOMOLENS

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

homolens

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Close

Other names: homolens

Database of homologous genes from Ensembl organisms and Ensembl families, structured under ACNUC sequence database management system.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

Databases of homologous gene families for comparative genomics
PMID: 19534752

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Close

• Databases of homologous gene families for comparative genomics PubMed citations: 71.

  71 articles citing: Databases of homologous gene families for comparative genomics

  ×

  A Pan-Cancer Analysis of the Oncogenic Role of WD Repeat Domain 74 in Multiple Tumors. PMID:35559034

  ---

  The Structural Determinants of Intra-Protein Compensatory Substitutions. PMID:35349721

  ---

  Relative Time Constraints Improve Molecular Dating. PMID:34668564

  ---

  RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. PMID:34568824

  ---

  Combining transposon mutagenesis and reporter genes to identify novel regulators of the topA promoter in Streptomyces. PMID:33985526

  ---

  An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. PMID:32899740

  ---

  Determining the interaction status and evolutionary fate of duplicated homomeric proteins. PMID:32853212

  ---

  GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss. PMID:32502238

  ---

  MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. PMID:32343307

  ---

  Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes? PMID:30917603

  ---

  AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. PMID:30893420

  ---

  Roles of the DedD Protein in Escherichia coli Cell Constriction. PMID:30692172

  ---

  CAARS: comparative assembly and annotation of RNA-Seq data. PMID:30452539

  ---

  GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution. PMID:29764363

  ---

  Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium. PMID:29220487

  ---

  Ancient genes establish stress-induced mutation as a hallmark of cancer. PMID:28441401

  ---

  DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies. PMID:28402423

  ---

  A scored human protein-protein interaction network to catalyze genomic interpretation. PMID:27892958

  ---

  A computational interactome and functional annotation for the human proteome. PMID:27770567

  ---

  LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life. PMID:27702814

  ---

  Efficient Gene Tree Correction Guided by Genome Evolution. PMID:27513924

  ---

  SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage. PMID:27401173

  ---

  Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation. PMID:27190002

  ---

  The link between orthology relations and gene trees: a correction perspective. PMID:27087831

  ---

  PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. PMID:26903996

  ---

  A generalized birth and death process for modeling the fates of gene duplication. PMID:26643106

  ---

  Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins. PMID:26604664

  ---

  Reconstructing a SuperGeneTree minimizing reconciliation. PMID:26451911

  ---

  Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence. PMID:26450112

  ---

  Genome-scale phylogenetic analysis finds extensive gene transfer among fungi. PMID:26323765

  ---

  Plastid establishment did not require a chlamydial partner. PMID:25758953

  ---

  Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts. PMID:25714744

  ---

  GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands. PMID:25659072

  ---

  Joint amalgamation of most parsimonious reconciled gene trees. PMID:25380957

  ---

  Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees. PMID:25371435

  ---

  Reductive genome evolution at both ends of the bacterial population size spectrum. PMID:25220308

  ---

  Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes. PMID:24398320

  ---

  PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. PMID:24275491

  ---

  Reconciliation-based detection of co-evolving gene families. PMID:24252193

  ---

  Efficient exploration of the space of reconciled gene trees. PMID:23925510

  ---

  EGN: a wizard for construction of gene and genome similarity networks. PMID:23841456

  ---

  Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26. PMID:23589360

  ---

  Reconciliation and local gene tree rearrangement can be of mutual profit. PMID:23566548

  ---

  The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC. PMID:23558341

  ---

  Ndufaf5 deficiency in the Dictyostelium model: new roles in autophagy and development. PMID:23536703

  ---

  TPMS: a set of utilities for querying collections of gene trees. PMID:23530580

  ---

  Lateral gene transfer from the dead. PMID:23355531

  ---

  Evolution of coding microsatellites in primate genomes. PMID:23315383

  ---

  OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. PMID:23203876

  ---

  HAMAP in 2013, new developments in the protein family classification and annotation system. PMID:23193261

  ---

  OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791

  ---

  Detection of bacterial 16S rRNA and identification of four clinically important bacteria by real-time PCR. PMID:23139793

  ---

  Genome-scale coestimation of species and gene trees. PMID:23132911

  ---

  The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain. PMID:23107454

  ---

  Computational workflow for analysis of gain and loss of genes in distantly related genomes. PMID:23046496

  ---

  Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations. PMID:23043116

  ---

  Weak 5'-mRNA secondary structures in short eukaryotic genes. PMID:23034215

  ---

  The chordate proteome history database. PMID:22904610

  ---

  Evidence for widespread GC-biased gene conversion in eukaryotes. PMID:22628461

  ---

  Lateral gene transfer as a support for the tree of life. PMID:22416123

  ---

  Identification and characterization of a bacterial hydrosulphide ion channel. PMID:22407320

  ---

  Calculating orthologs in bacteria and Archaea: a divide and conquer approach. PMID:22174796

  ---

  Wdr74 is required for blastocyst formation in the mouse. PMID:21799883

  ---

  Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. PMID:21737420

  ---

  The two tryptophans of β2-microglobulin have distinct roles in function and folding and might represent two independent responses to evolutionary pressure. PMID:21663612

  ---

  Ultra-fast sequence clustering from similarity networks with SiLiX. PMID:21513511

  ---

  OMA 2011: orthology inference among 1000 complete genomes. PMID:21113020

  ---

  PhEVER: a database for the global exploration of virus-host evolutionary relationships. PMID:21081560

  ---

  An efficient method to find potentially universal population genetic markers, applied to metazoans. PMID:20836842

  ---

  Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution. PMID:20551039

  ---

  The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. PMID:19534734

Tags:

Tags

More detailed information about this field from each metasource. ×

genetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

evolutionary biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

gene and protein families

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

phylogeny

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

---

genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Close

genetics evolutionary biology model organisms gene and protein families phylogeny genomics