WholeCellSimDB
WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researchers to explore and analyze whole-cell model predictions including predicted: - Metabolite concentrations, - DNA, RNA and protein expression, - DNA-bound protein positions, - DNA modification positions, and - Ribome positions.
Description
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WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researchers to explore and analyze whole-cell model predictions including predicted: - Metabolite concentrations, - DNA, RNA and protein expression, - DNA-bound protein positions, - DNA modification positions, and - Ribome positions.
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://www.wholecellsimdb.orgWebpage
More detailed information about this field from each metasource.
http://www.wholecellsimdb.org
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence:
Name: Wholecells DB MIT LicenceLicence name
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Wholecells DB MIT Licence
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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http://www.wholecellsimdb.org/about
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
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WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
PMID: 25231498
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
PMID: 25231498
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
PubMed citations: 10.
10 articles citing: WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
Construction of Multiscale Genome-Scale Metabolic Models: Frameworks and Challenges. PMID:35625648
Building Structural Models of a Whole Mycoplasma Cell. PMID:34774566
Modeling cell population dynamics. PMID:30562900
Reproducible model development in the cardiac electrophysiology Web Lab. PMID:29842853
Emerging whole-cell modeling principles and methods. PMID:29275251
Automated visualization of rule-based models. PMID:29131816
How to deal with parameters for whole-cell modelling. PMID:28768879
Evolvix BEST Names for semantic reproducibility across code2brain interfaces. PMID:27918836
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena. PMID:27412095
Toward Community Standards and Software for Whole-Cell Modeling. PMID:27305665
Tags:
Tags
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolite
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolite
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: WholeCellSimDB; WholeCellSimDB; DOI: https://doi.org/10.25504/FAIRsharing.ew61fn; Last edited: Dec. 19, 2019, 4:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna gene expression metabolite protein
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