ViralORFeome
Database and management system that provides an integrated set of bioinformatic tools to clone viral ORFs in the Gateway(R) system. It provides an interface to navigate through virus genome sequences, to design ORF-specific cloning primers, to validate the sequence of generated constructs and to browse established collections of virus ORFs. It has been designed to manage all possible variants or mutants of a given ORF so that the cloning procedure can be applied to any emerging virus strain.
Description
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Database and management system that provides an integrated set of bioinformatic tools to clone viral ORFs in the Gateway(R) system. It provides an interface to navigate through virus genome sequences, to design ORF-specific cloning primers, to validate the sequence of generated constructs and to browse established collections of virus ORFs. It has been designed to manage all possible variants or mutants of a given ORF so that the cloning procedure can be applied to any emerging virus strain.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
Webpage:
https://doi.org/10.1093/nar/gkp1000Webpage
More detailed information about this field from each metasource.
https://doi.org/10.1093/nar/gkp1000
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
Publications:
Publications
More detailed information about this field from each metasource.
ViralORFeome: an integrated database to generate a versatile collection of viral ORFs
PMID: 20007148
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
Publications
More detailed information about this field from each metasource.
ViralORFeome: an integrated database to generate a versatile collection of viral ORFs
PMID: 20007148
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
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ViralORFeome: an integrated database to generate a versatile collection of viral ORFs
PubMed citations: 21.
21 articles citing: ViralORFeome: an integrated database to generate a versatile collection of viral ORFs
A Bioluminescent 3CLPro Activity Assay to Monitor SARS-CoV-2 Replication and Identify Inhibitors. PMID:34578395
Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. PMID:26268547
Virus-host interactomics: new insights and opportunities for antiviral drug discovery. PMID:25593595
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
Epstein-Barr virus nuclear antigen 3A protein regulates CDKN2B transcription via interaction with MIZ-1. PMID:25092922
Exploration of panviral proteome: high-throughput cloning and functional implications in virus-host interactions. PMID:24955142
Identification and comparative analysis of hepatitis C virus-host cell protein interactions. PMID:24136289
The Golgi protein ACBD3, an interactor for poliovirus protein 3A, modulates poliovirus replication. PMID:23926333
High-throughput cloning and expression library creation for functional proteomics. PMID:23457047
BST-2/tetherin-mediated restriction of chikungunya (CHIKV) VLP budding is counteracted by CHIKV non-structural protein 1 (nsP1). PMID:23411007
The V protein of Tioman virus is incapable of blocking type I interferon signaling in human cells. PMID:23342031
Virus-host interactomes--antiviral drug discovery. PMID:23057872
Comparative analysis of virus-host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. PMID:22898364
Large scale genotype comparison of human papillomavirus E2-host interaction networks provides new insights for e2 molecular functions. PMID:22761572
Epstein-Barr virus protein EB2 stimulates cytoplasmic mRNA accumulation by counteracting the deleterious effects of SRp20 on viral mRNAs. PMID:22505578
Mapping of Chikungunya virus interactions with host proteins identified nsP2 as a highly connected viral component. PMID:22258240
Heterologous expression of membrane proteins: choosing the appropriate host. PMID:22216205
IRGM is a common target of RNA viruses that subvert the autophagy network. PMID:22174682
Flavivirus NS3 and NS5 proteins interaction network: a high-throughput yeast two-hybrid screen. PMID:22014111
Generation and comprehensive analysis of an influenza virus polymerase cellular interaction network. PMID:21994455
Design and screening of M13 phage display cDNA libraries. PMID:21330956
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virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
probes and primers
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:44.888190
Tags
More detailed information about this field from each metasource.
virology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
probes and primers
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:44.888190
virology probes and primers transcription factors and regulatory sites genomics
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