Unipathway
Names
More detailed information about this field from each metasource.
Unipathway
metasource: Biontology / Bioportal
version: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UPA
metasource: Biontology / Bioportal
version: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UniPathway
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Unipathway
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UPA
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UniPathway
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Unipathway
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UPA
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
UniPathway
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
UniPathway (http://www.unipathway.org) is a fully manually curated resource for the representation and annotation of metabolic pathways. UniPathway provides explicit representations of enzyme-catalyzed and spontaneous chemical reactions, as well as a hierarchical representation of metabolic pathways. This hierarchy uses linear subpathways as the basic building block for the assembly of larger and more complex pathways, including species-specific pathway variants. All of the pathway data in UniPathway has been extensively cross-linked to existing pathway resources such as KEGG and MetaCyc, as well as sequence resources such as the UniProt KnowledgeBase (UniProtKB), for which UniPathway provides a controlled vocabulary for pathway annotation. We introduce here the basic concepts underlying the UniPathway resource, with the aim of allowing users to fully exploit the information provided by UniPathway.
Description
More detailed information about this field from each metasource.
UniPathway (http://www.unipathway.org) is a fully manually curated resource for the representation and annotation of metabolic pathways. UniPathway provides explicit representations of enzyme-catalyzed and spontaneous chemical reactions, as well as a hierarchical representation of metabolic pathways. This hierarchy uses linear subpathways as the basic building block for the assembly of larger and more complex pathways, including species-specific pathway variants. All of the pathway data in UniPathway has been extensively cross-linked to existing pathway resources such as KEGG and MetaCyc, as well as sequence resources such as the UniProt KnowledgeBase (UniProtKB), for which UniPathway provides a controlled vocabulary for pathway annotation. We introduce here the basic concepts underlying the UniPathway resource, with the aim of allowing users to fully exploit the information provided by UniPathway.
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
Metabolic pathway information in UniProt knowledge base
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
https://github.com/geneontology/unipathwayWebpage
More detailed information about this field from each metasource.
https://github.com/geneontology/unipathway
metasource: Biontology / Bioportalversion: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
http://www.unipathway.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
UniPathway: a resource for the exploration and annotation of metabolic pathways
PMID: 22102589
metasource: Biontology / Bioportal
version: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
http://dx.doi.org/10.1093/nar/GKR1023
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
UniPathway: a resource for the exploration and annotation of metabolic pathways
PMID: 22102589
metasource: Biontology / Bioportal
version: UniPathway Release 2015_03 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/UPA
http://dx.doi.org/10.1093/nar/GKR1023
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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UniPathway: a resource for the exploration and annotation of metabolic pathways
PubMed citations: 53.
53 articles citing: UniPathway: a resource for the exploration and annotation of metabolic pathways
Prediction of trehalose-metabolic pathway and comparative analysis of KEGG, MetaCyc, and RAST databases based on complete genome of Variovorax sp. PAMC28711. PMID:34991451
High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032. PMID:34867870
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools. PMID:34657989
PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria. PMID:34551435
DES-Tcell is a knowledgebase for exploring immunology-related literature. PMID:34253812
Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus. PMID:34188046
DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases. PMID:32308806
Unveiling the presence of biosynthetic pathways for bioactive compounds in the Thalassiosira rotula transcriptome. PMID:31289324
Literature-Based Enrichment Insights into Redox Control of Vascular Biology. PMID:31223421
Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution. PMID:31206013
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences. PMID:30165572
GROOLS: reactive graph reasoning for genome annotation through biological processes. PMID:29642842
Stable Gene Regulatory Network Modeling From Steady-State Data. PMID:28952574
De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus. PMID:28873438
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. PMID:28729549
biochem4j: Integrated and extensible biochemical knowledge through graph databases. PMID:28708831
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Protein Bioinformatics Databases and Resources. PMID:28150231
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. PMID:27899624
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment. PMID:27822528
MBROLE 2.0-functional enrichment of chemical compounds. PMID:27084944
ChemProt-3.0: a global chemical biology diseases mapping. PMID:26876982
DESM: portal for microbial knowledge exploration systems. PMID:26546514
MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. PMID:26527720
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View. PMID:26366735
Differential Proteomic Analysis Using iTRAQ Reveals Alterations in Hull Development in Rice (Oryza sativa L.). PMID:26230730
Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S. PMID:26203328
Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms. PMID:26189990
Biological databases for human research. PMID:25712261
The InterPro protein families database: the classification resource after 15 years. PMID:25428371
The GOA database: gene Ontology annotation updates for 2015. PMID:25378336
Updates in Rhea--a manually curated resource of biochemical reactions. PMID:25332395
Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway. PMID:25210598
Analysis of the protein domain and domain architecture content in fungi and its application in the search of new antifungal targets. PMID:25033262
Profiling the orphan enzymes. PMID:24906382
HMPAS: Human Membrane Protein Analysis System. PMID:24564858
Systems biology approach to the dissection of the complexity of regulatory networks in the S. scrofa cardiocirculatory system. PMID:24284405
Analyzing LC/MS metabolic profiling data in the context of existing metabolic networks. PMID:24010053
Metabolomics reveals broad-scale metabolic perturbations in hyperglycemic mothers during pregnancy. PMID:23990511
A daily-updated tree of (sequenced) life as a reference for genome research. PMID:23778980
The challenge of constructing, classifying, and representing metabolic pathways. PMID:23746312
Recent progress in the development of metabolome databases for plant systems biology. PMID:23577015
Finding type 2 diabetes causal single nucleotide polymorphism combinations and functional modules from genome-wide association data. PMID:23566118
HAMAP in 2013, new developments in the protein family classification and annotation system. PMID:23193261
Reconciliation of metabolites and biochemical reactions for metabolic networks. PMID:23172809
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Update on activities at the Universal Protein Resource (UniProt) in 2013. PMID:23161681
neXtProt: a knowledge platform for human proteins. PMID:22139911
Rhea--a manually curated resource of biochemical reactions. PMID:22135291
InterPro in 2011: new developments in the family and domain prediction database. PMID:22096229 - http://dx.doi.org/10.1093/nar/GKR1023
Tags:
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metabolic and signaling pathways metabolic and signaling pathways
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