The Diatom EST Database
Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. On a global scale, they generate around one fifth of the oxygen we breathe. On this web site we present searchable databases of diatom ESTs (expressed sequence tags) that can be used to explore diatom biology.
Description
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Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. On a global scale, they generate around one fifth of the oxygen we breathe. On this web site we present searchable databases of diatom ESTs (expressed sequence tags) that can be used to explore diatom biology.
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://www.biologie.ens.fr/diatomics/EST3Webpage
More detailed information about this field from each metasource.
http://www.biologie.ens.fr/diatomics/EST3
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Diatom EST Database
PMID: 15608213
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Update of the Diatom EST Database: a new tool for digital transcriptomics
PMID: 19029140
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
The Diatom EST Database
PMID: 15608213
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Update of the Diatom EST Database: a new tool for digital transcriptomics
PMID: 19029140
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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The Diatom EST Database
PubMed citations: 27.
27 articles citing: The Diatom EST Database
Characterization of endogenous promoters of GapC1 and GS for recombinant protein expression in Phaeodactylum tricornutum. PMID:34713604
Adaptation to life on land at high O2 via transition from ferredoxin-to NADH-dependent redox balance. PMID:31431166
Identification and characterisation of the novel endogenous promoter HASP1 and its signal peptide from Phaeodactylum tricornutum. PMID:31289300
Alternative Mechanisms for Fast Na+/Ca2+ Signaling in Eukaryotes via a Novel Class of Single-Domain Voltage-Gated Channels. PMID:31006567
Mitochondrial Glycolysis in a Major Lineage of Eukaryotes. PMID:30060189
Effect of an Introduced Phytoene Synthase Gene Expression on Carotenoid Biosynthesis in the Marine Diatom Phaeodactylum tricornutum. PMID:26308005
Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes. PMID:25994931
Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum. PMID:25489020
Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy. PMID:24044362
Structure prediction of partial-length protein sequences. PMID:23867606
Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum. PMID:22672912
Adaptive informatics for multifactorial and high-content biological data. PMID:21516115
Digital expression profiling of novel diatom transcripts provides insight into their biological functions. PMID:20738856
Carotenoid biosynthesis in diatoms. PMID:20734232
Genetic engineering of algae for enhanced biofuel production. PMID:20139239
Dynamic response of the transcriptome of a psychrophilic diatom, Chaetoceros neogracile, to high irradiance. PMID:19924439
Update of the Diatom EST Database: a new tool for digital transcriptomics. PMID:19029140
Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms. PMID:18682837
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. PMID:18653757
A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis. PMID:18183306
Tryptophan biosynthesis in stramenopiles: eukaryotic winners in the diatom complex chloroplast. PMID:17938992
Chlamydomonas reinhardtii CNX1E reconstitutes molybdenum cofactor biosynthesis in Escherichia coli mutants. PMID:17416894
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). PMID:17202165
Analysis of expressed sequence tags from the harmful alga, Prymnesium parvum (Prymnesiophyceae, Haptophyta). PMID:16896534
NADPH oxidases in Eukaryotes: red algae provide new hints! PMID:16344959
The peculiar distribution of class I and class II aldolases in diatoms and in red algae. PMID:16273368
Comparative genomics of the pennate diatom Phaeodactylum tricornutum. PMID:15665249 -
Update of the Diatom EST Database: a new tool for digital transcriptomics
PubMed citations: 24.
24 articles citing: Update of the Diatom EST Database: a new tool for digital transcriptomics
A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum. PMID:31624346
Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal. PMID:30813258
Challenging the workhorse: Comparative analysis of eukaryotic micro-organisms for expressing monoclonal antibodies. PMID:30739333
Comparative in depth RNA sequencing of P. tricornutum's morphotypes reveals specific features of the oval morphotype. PMID:30254372
Ocean acidification conditions increase resilience of marine diatoms. PMID:29899534
An Emerging Model Diatom to Study Nitrogen Metabolism. PMID:28827375
Rapid induction of GFP expression by the nitrate reductase promoter in the diatom Phaeodactylum tricornutum. PMID:27635322
Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum. PMID:26692124
Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes. PMID:25994931
Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum. PMID:25489020
The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. PMID:25142710
Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy. PMID:24044362
A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids. PMID:23899289
Stemming epigenetics in marine stramenopiles. PMID:22294878
The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing. PMID:22014029
Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. PMID:21857960
Genomics of microalgae, fuel for the future? PMID:21255351
A gene in the process of endosymbiotic transfer. PMID:20949086
Digital expression profiling of novel diatom transcripts provides insight into their biological functions. PMID:20738856
Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation. PMID:20490922
Characterization of a trimeric light-harvesting complex in the diatom Phaeodactylum tricornutum built of FcpA and FcpE proteins. PMID:20478968
Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling. PMID:20146805
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom. PMID:20028555
Gene silencing in the marine diatom Phaeodactylum tricornutum. PMID:19487243
Tags:
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
messenger rna
metasource: Fairsharing.org
version: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
messenger rna
metasource: Fairsharing.orgversion: FAIRsharing.org: The Diatom EST Database; The Diatom EST Database; DOI: https://doi.org/10.25504/FAIRsharing.csbxzs; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna gene expression messenger rna
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