SwissLipids
Names
More detailed information about this field from each metasource.
SwissLipids
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
A knowledge resource for lipids and their biology
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
Swiss+Lipids
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
swisslipids
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
Names
More detailed information about this field from each metasource.
SwissLipids
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
A knowledge resource for lipids and their biology
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
Swiss+Lipids
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
swisslipids
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
Other names: A knowledge resource for lipids and their biology, Swiss+Lipids, swisslipids
Names
More detailed information about this field from each metasource.
SwissLipids
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
A knowledge resource for lipids and their biology
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
Swiss+Lipids
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
swisslipids
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models. SwissLipids is updated daily.
Description
More detailed information about this field from each metasource.
SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models. SwissLipids is updated daily.
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
SwissLipids is a comprehensive reference database that links mass spectrometry-based lipid identifications to curated knowledge of lipid structures, metabolic reactions, enzymes and interacting proteins. It features approximately 500,000 lipid structures from more than 115 lipid classes and over 3,000 enzymatic reactions and 800 proteins.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
Webpage:
http://www.swisslipids.org/#/Webpage
More detailed information about this field from each metasource.
http://www.swisslipids.org/#/
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
Licence:
Name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CC
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nc-nd/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The SwissLipids knowledgebase for lipid biology
PMID: 25943471
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
The SwissLipids knowledgebase for lipid biology
PMID: 25943471
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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The SwissLipids knowledgebase for lipid biology
PubMed citations: 46.
46 articles citing: The SwissLipids knowledgebase for lipid biology
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. PMID:35888710
A set of gene knockouts as a resource for global lipidomic changes. PMID:35732804
Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks. PMID:35639928
Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. PMID:35404045
Lipidomic risk scores are independent of polygenic risk scores and can predict incidence of diabetes and cardiovascular disease in a large population cohort. PMID:35239643
Signaling Lipidomic Analysis of Thermogenic Adipocytes. PMID:35167102
Managing the life cycle of a portfolio of open data resources at the SIB Swiss Institute of Bioinformatics. PMID:34850820
eQuilibrator 3.0: a database solution for thermodynamic constant estimation. PMID:34850162
The Hitchhiker's Guide to Untargeted Lipidomics Analysis: Practical Guidelines. PMID:34822371
Rhea, the reaction knowledgebase in 2022. PMID:34755880
Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in lesion recovery. PMID:34706241
Recommendations for good practice in MS-based lipidomics. PMID:34662536
Proteomic and Metabolomic Characterization of Metabolically Healthy Obesity: A Descriptive Study from a Swedish Cohort. PMID:34659828
Mouse lipidomics reveals inherent flexibility of a mammalian lipidome. PMID:34588529
Clinical lipidomics: realizing the potential of lipid profiling. PMID:34582882
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PMID:34411100
Distinct Molecular Signatures of Clinical Clusters in People With Type 2 Diabetes: An IMI-RHAPSODY Study. PMID:34376475
Shotgun mass spectrometry-based lipid profiling identifies and distinguishes between chronic inflammatory diseases. PMID:34311325
YPIBP: A repository for phosphoinositide-binding proteins in yeast. PMID:34285772
DES-Tcell is a knowledgebase for exploring immunology-related literature. PMID:34253812
Metabolic View on Human Healthspan: A Lipidome-Wide Association Study. PMID:33946321
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
Fluidity and Lipid Composition of Membranes of Peroxisomes, Mitochondria and the ER From Oleic Acid-Induced Saccharomyces cerevisiae. PMID:33195209
Plasma lipidomics of monozygotic twins discordant for multiple sclerosis. PMID:33159711
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. PMID:33156326
137Cs γ Ray and 28Si Irradiation Induced Murine Hepatocellular Carcinoma Lipid Changes in Liver Assessed by MALDI-MSI Combined with Spatial Shrunken Centroid Clustering Algorithm: A Pilot Study. PMID:33043195
Automated Annotation of Sphingolipids Including Accurate Identification of Hydroxylation Sites Using MSn Data. PMID:33003696
Storage Conditions of Human Kidney Tissue Sections Affect Spatial Lipidomics Analysis Reproducibility. PMID:32897710
Goslin: A Grammar of Succinct Lipid Nomenclature. PMID:32589019
Tissue- and sex-specific lipidomic analysis of Schistosoma mansoni using high-resolution atmospheric pressure scanning microprobe matrix-assisted laser desorption/ionization mass spectrometry imaging. PMID:32401760
Improving lipid mapping in Genome Scale Metabolic Networks using ontologies. PMID:32215752
Response Surface Methodology As a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging. PMID:32126772
Enzyme annotation in UniProtKB using Rhea. PMID:31688925
Machine learning of human plasma lipidomes for obesity estimation in a large population cohort. PMID:31626640
LION/web: a web-based ontology enrichment tool for lipidomic data analysis. PMID:31141612
Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling. PMID:30736318
Lipidomics in Major Depressive Disorder. PMID:30374314
Cholesterol is Inefficiently Converted to Cholesteryl Esters in the Blood of Cardiovascular Disease Patients. PMID:30282999
Updates in Rhea: SPARQLing biochemical reaction data. PMID:30272209
Proposal for a common nomenclature for fragment ions in mass spectra of lipids. PMID:29161304
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. PMID:28520864
LipidFrag: Improving reliability of in silico fragmentation of lipids and application to the Caenorhabditis elegans lipidome. PMID:28278196
Updates in Rhea - an expert curated resource of biochemical reactions. PMID:27789701
Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulations. PMID:27071656
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. PMID:26527720
Tags:
Tags
More detailed information about this field from each metasource.
biocuration
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular localization
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
chemical structure
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
lipid
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
literature curation
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
biological molecul
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
interactions
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
lipidomics data
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metabolism
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metabolomics
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
structures
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
subcellular localization
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
tissular localization
metasource: re3data.org
version: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
lipids
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:26.052915
Tags
More detailed information about this field from each metasource.
biocuration
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular localization
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
chemical structure
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
enzyme
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
lipid
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
literature curation
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissLipids; SwissLipids; DOI: https://doi.org/10.25504/FAIRsharing.pxr7x2; Last edited: March 6, 2019, 12:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
biological molecul
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
interactions
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
lipidomics data
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metabolism
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
metabolomics
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
structures
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
subcellular localization
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
tissular localization
metasource: re3data.orgversion: re3data.org: SwissLipids; editing status 2019-02-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TZ18 last accessed: 2022-11-04
lipids
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:26.052915
biocuration cellular localization chemical structure enzyme lipid literature curation mass spectrometry spectra molecular interaction structure biological molecul interactions lipidomics data metabolism metabolomics structures subcellular localization tissular localization lipids molecular interactions, pathways and networks small molecule
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