Statistical Torsional Angles Potentials of NMR Refinement Database
Names
More detailed information about this field from each metasource.
Statistical Torsional Angles Potentials of NMR Refinement Database
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
STAP
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
STAP refinement of NMRdb
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
stap
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
Names
More detailed information about this field from each metasource.
Statistical Torsional Angles Potentials of NMR Refinement Database
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
STAP
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
STAP refinement of NMRdb
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
stap
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
Other names: STAP, STAP refinement of NMRdb, stap
Names
More detailed information about this field from each metasource.
Statistical Torsional Angles Potentials of NMR Refinement Database
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
STAP
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
STAP refinement of NMRdb
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
stap
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
This source may no longer be available. No known URL could be resolved successfully.
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinements have been performed using statistical torsion angle potential and structurally- or experimentally- derived distance potential. The refined structures have a significantly improved structural quality compared to their initial NMR structure.
Description
More detailed information about this field from each metasource.
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinements have been performed using statistical torsion angle potential and structurally- or experimentally- derived distance potential. The refined structures have a significantly improved structural quality compared to their initial NMR structure.
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Refined solution NMR structures
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Database of 2405 reinfed solution NMR (nuclear magnetic resonance structures).
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
Webpage:
http://psb.kobic.re.kr/stap/refinement/Webpage
More detailed information about this field from each metasource.
http://psb.kobic.re.kr/stap/refinement/
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://psb.kobic.re.kr/STAP/refinement
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://psb.kobic.re.kr/STAP/refinement/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
Publications:
Publications
More detailed information about this field from each metasource.
STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures
PMID: 22102572
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach
PMID: 23408564
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores
PMID: 26504145
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Protein NMR structures refined without NOE data
PMID: 25279564
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/GKR1021
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures
PMID: 22102572
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach
PMID: 23408564
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores
PMID: 26504145
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Protein NMR structures refined without NOE data
PMID: 25279564
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/GKR1021
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures
PubMed citations: 7.
7 articles citing: STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures
Core packing of well-defined X-ray and NMR structures is the same. PMID:35900019
Comparative studies of the expression of creatine kinase isoforms under immune stress in Pelodiscus sinensis. PMID:32531365
Finding the needle in the haystack: towards solving the protein-folding problem computationally. PMID:28976219
Improving NMR Structures of RNA. PMID:27066747
Protein NMR structures refined without NOE data. PMID:25279564
Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures. PMID:24392845
Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures. PMID:23011872 -
Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach
PubMed citations: 6.
6 articles citing: Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach
From System Modeling to System Analysis: The Impact of Resolution Level and Resolution Distribution in the Computer-Aided Investigation of Biomolecules. PMID:34164432
Development of Bacillus methanolicus methanol dehydrogenase with improved formaldehyde reduction activity. PMID:30127388
Deep Learning- and Transfer Learning-Based Super Resolution Reconstruction from Single Medical Image. PMID:29065625
Finding the needle in the haystack: towards solving the protein-folding problem computationally. PMID:28976219
Kinetics for Zinc Ion Induced Sepia Pharaonis Arginine Kinase Inactivation and Aggregation. PMID:27030550
Protein NMR structures refined without NOE data. PMID:25279564 -
NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores
PubMed citations: 3.
3 articles citing: NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores
Core packing of well-defined X-ray and NMR structures is the same. PMID:35900019
Tick saliva protein Evasin-3 modulates chemotaxis by disrupting CXCL8 interactions with glycosaminoglycans and CXCR2. PMID:31235521
A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions. PMID:27771862 -
Protein NMR structures refined without NOE data
PubMed citations: 1.
1 articles citing: Protein NMR structures refined without NOE data
Local Protein Structure Refinement via Molecular Dynamics Simulations with locPREFMD. PMID:27380201 - http://dx.doi.org/10.1093/nar/GKR1021
Tags:
Tags
More detailed information about this field from each metasource.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
nmr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
mri
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
structural biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
structure analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.915308
Tags
More detailed information about this field from each metasource.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: STAP; Statistical Torsional Angles Potentials of NMR Refinement Database; DOI: https://doi.org/10.25504/FAIRsharing.ja9cdq; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nmr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
mri
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
structural biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
structure analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:52.915308
protein structure structure nmr mri structural biology structure analysis
Need help integrating and/or managing biomedical data?