Sol Genomics Network
Names
More detailed information about this field from each metasource.
Sol Genomics Network
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
SGN
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
SolGenomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
SOL Genomics Network
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Solanaceae Genomics Network
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
sol_genomics_network
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
Names
More detailed information about this field from each metasource.
Sol Genomics Network
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
SGN
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
SolGenomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
SOL Genomics Network
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Solanaceae Genomics Network
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
sol_genomics_network
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
Other names: SGN, SolGenomics, SOL Genomics Network, Solanaceae Genomics Network, sol_genomics_network
Names
More detailed information about this field from each metasource.
Sol Genomics Network
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
SGN
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
SolGenomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
SOL Genomics Network
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Solanaceae Genomics Network
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
sol_genomics_network
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the Solanaceae family, which includes species such as tomato, potato, pepper, petunia and eggplant.
Description
More detailed information about this field from each metasource.
The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the Solanaceae family, which includes species such as tomato, potato, pepper, petunia and eggplant.
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Solanaceae Genomics Network
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Sol Genomics Network (SGN) is a clade-oriented database dedicated to the biology of the Solanaceae family which includes a large number of closely related and many agronomically important species such as tomato, potato, tobacco, eggplant, pepper, and the ornamental Petunia hybrida. SGN is part of the International Solanaceae Initiative (SOL), which has the long-term goal of creating a network of resources and information to address key questions in plant adaptation and diversification
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
The Sol Genomics Network is a clade-oriented database containing biological data for species in the Solanaceae and their close relatives, with data types ranging from chromosomes and genes to phenotypes and accessions. SGN hosts several genome maps and sequences, including a pre-release of the tomato reference genome. A new transcriptome component has been added to store RNA-seq and microarray data.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
Webpage:
https://solgenomics.netWebpage
More detailed information about this field from each metasource.
https://solgenomics.net
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://solgenomics.net/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
https://solgenomics.net/
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Licence:
Name: 2009 Toronto Statement on Benefits and Best Practices of Rapid Pre-Publication Data ReleaseLicence name
More detailed information about this field from each metasource.
2009 Toronto Statement on Benefits and Best Practices of Rapid Pre-Publication Data Release
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
other
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://dx.doi.org/10.1038%2F461168a
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://solgenomics.net/legal.pl
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding
PMID: 25428362
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
PMID: 20935049
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
http://dx.doi.org/10.1093/nar/
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding
PMID: 25428362
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
PMID: 20935049
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
http://dx.doi.org/10.1093/nar/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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The Sol Genomics Network (SGN)--from genotype to phenotype to breeding
PubMed citations: 196.
196 articles citing: The Sol Genomics Network (SGN)--from genotype to phenotype to breeding
Genome-Wide Classification and Evolutionary Analysis Reveal Diverged Patterns of Chalcone Isomerase in Plants. PMID:35883518
Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses. PMID:35798722
The rolB-transgenic Nicotiana tabacum plants exhibit upregulated ARF7 and ARF19 gene expression. PMID:35774625
Genome-Wide Identification and Analysis of the Class III Peroxidase Gene Family in Tobacco (Nicotiana tabacum). PMID:35769995
The Origin and Evolution of RNase T2 Family and Gametophytic Self-incompatibility System in Plants. PMID:35714207
Genome-wide identification and expression analysis of the R2R3-MYB gene family in tobacco (Nicotiana tabacum L.). PMID:35681121
Aquaculture Molecular Breeding Platform (AMBP): a comprehensive web server for genotype imputation and genetic analysis in aquaculture. PMID:35639514
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato. PMID:35551312
Comprehensive Profiling of Tubby-Like Proteins in Soybean and Roles of the GmTLP8 Gene in Abiotic Stress Responses. PMID:35548296
postQTL: a QTL mapping R workflow to improve the accuracy of true positive loci identification. PMID:35509088
Genome-Wide Analysis of the Protein Phosphatase 2C Genes in Tomato. PMID:35456410
Identification of novel PHD-finger genes in pepper by genomic re-annotation and comparative analyses. PMID:35443608
Breedbase: a digital ecosystem for modern plant breeding. PMID:35385099
Effects of 'Candidatus Liberibacter solanacearum' haplotypes A and B on tomato gene expression and geotropism. PMID:35354405
Genome-Wide Identification of Petunia HSF Genes and Potential Function of PhHSF19 in Benzenoid/Phenylpropanoid Biosynthesis. PMID:35328393
An Integrated Bioinformatics and Functional Approach for miRNA Validation. PMID:35325428
Modifying Anthocyanins Biosynthesis in Tomato Hairy Roots: A Test Bed for Plant Resistance to Ionizing Radiation and Antioxidant Properties in Space. PMID:35283922
A new NLR gene for resistance to Tomato spotted wilt virus in tomato (Solanum lycopersicum). PMID:35179614
Screening of CRISPR/Cas9 gRNA for mimicking Powdery Mildew resistant MLO ol-2 mutant. PMID:35173386
PlantGF: an analysis and annotation platform for plant gene families. PMID:35134149
A flavin-dependent monooxygenase produces nitrogenous tomato aroma volatiles using cysteine as a nitrogen source. PMID:35131946
The Grape Gene Reference Catalogue as a Standard Resource for Gene Selection and Genetic Improvement. PMID:35111182
The chloroplast redox-responsive transcriptome of solanaceous plants reveals significant nuclear gene regulatory motifs associated to stress acclimation. PMID:35044587
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
Genome-wide analysis uncovers tomato leaf lncRNAs transcriptionally active upon Pseudomonas syringae pv. tomato challenge. PMID:34972834
Photosynthesis-related genes induce resistance against soybean mosaic virus: Evidence for involvement of the RNA silencing pathway. PMID:34962034
Mitochondria-Targeted SmsHSP24.1 Overexpression Stimulates Early Seedling Vigor and Stress Tolerance by Multi-Pathway Transcriptome-Reprogramming. PMID:34887885
A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz). PMID:34876620
Effects of the Noncoding Subgenomic RNA of Red Clover Necrotic Mosaic Virus in Virus Infection. PMID:34851690
Breeding for Resistance to Fusarium Wilt of Tomato: A Review. PMID:34828278
CRISPR/Cas9-mediated knockout of the DCL2 and DCL4 genes in Nicotiana benthamiana and its productivity of recombinant proteins. PMID:34783883
Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum. PMID:34773990
In-silico genome wide analysis of Mitogen activated protein kinase kinase kinase gene family in C. sinensis. PMID:34735479
PCMDB: a curated and comprehensive resource of plant cell markers. PMID:34718712
Two Carbohydrate-Based Natural Extracts Stimulate in vitro Pollen Germination and Pollen Tube Growth of Tomato Under Cold Temperatures. PMID:34691089
Genetic Mapping of the HLA1 Locus Causing Hybrid Lethality in Nicotiana Interspecific Hybrids. PMID:34685871
Tomato leaves under stress: a comparison of stress response to mild abiotic stress between a cultivated and a wild tomato species. PMID:34677706
Starch branching enzymes as putative determinants of postharvest quality in horticultural crops. PMID:34674662
Genome-Wide Identification and Evolutionary Analysis of the SRO Gene Family in Tomato. PMID:34621298
The Breeding Information Management System (BIMS): an online resource for crop breeding. PMID:34415997
The RGF/GLV/CLEL Family of Short Peptides Evolved Through Lineage-Specific Losses and Diversification and Yet Conserves Its Signaling Role Between Vascular Plants and Bryophytes. PMID:34354727
Neofunctionalisation of the Sli gene leads to self-compatibility and facilitates precision breeding in potato. PMID:34230471
Genome-wide characterization, evolution, and expression profiling of FBA gene family in response to light treatments and abiotic stress in Nicotiana tabacum. PMID:34120568
Identification and Expression Analysis of miR160 and Their Target Genes in Cucumber. PMID:34117971
Fifty years of a public cassava breeding program: evolution of breeding objectives, methods, and decision-making processes. PMID:34086085
Identification and characterization of GLOBE, a major gene controlling fruit shape and impacting fruit size and marketability in tomato. PMID:34075031
Comparative Analysis of Re-Annotated Genes Provides Insight into Evolutionary Divergence and Expressions of Aquaporin Family in Pepper. PMID:34064088
Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach. PMID:34028582
Virus-Mediated Targeted DNA Methylation Illuminates the Dynamics of Methylation in an Endogenous Plant Gene. PMID:33923780
Pinpointing regulatory protein phosphatase 2A subunits involved in beneficial symbiosis between plants and microbes. PMID:33863284
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. PMID:33852055
iTRAQ-based proteome profiling revealed the role of Phytochrome A in regulating primary metabolism in tomato seedling. PMID:33824368
PopAmaranth: A population genetic genome browser for grain amaranths and their wild relatives. PMID:33822034
Characterization and elimination of linkage-drag associated with Fusarium wilt race 3 resistance genes. PMID:33786652
CRISPR/Cas9-Mediated Generation of Pathogen-Resistant Tomato against Tomato Yellow Leaf Curl Virus and Powdery Mildew. PMID:33668636
Lasting consequences of psyllid (Bactericera cockerelli L.) infestation on tomato defense, gene expression, and growth. PMID:33627099
The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality. PMID:33618672
Dynamic histone acetylation in floral volatile synthesis and emission in petunia flowers. PMID:33606881
Technological Innovations for Improving Cassava Production in Sub-Saharan Africa. PMID:33552138
Transcriptome data for tissue-specific genes in four reproductive organs at three developmental stages of micro-tom tomato. PMID:33506081
Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research. PMID:33453123
Application of Genome Editing in Tomato Breeding: Mechanisms, Advances, and Prospects. PMID:33445555
Sugar and Hormone Dynamics and the Expression Profiles of SUT/SUC and SWEET Sweet Sugar Transporters during Flower Development in Petunia axillaris. PMID:33327497
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement. PMID:33313544
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
Protein phosphatase NtPP2C2b and MAP kinase NtMPK4 act in concert to modulate nicotine biosynthesis. PMID:33258946
High density genotype storage for plant breeding in the Chado schema of Breedbase. PMID:33175872
Strawberry FaNAC2 Enhances Tolerance to Abiotic Stress by Regulating Proline Metabolism. PMID:33114021
PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs. PMID:33079992
Fruit quality and DNA methylation are affected by parental order in reciprocal crosses of tomato. PMID:33079280
Detection of Quantitative Trait Loci (QTL) Associated with the Fruit Morphology of Tomato. PMID:32987633
WRKY22 and WRKY25 transcription factors are positive regulators of defense responses in Nicotiana benthamiana. PMID:32909182
Formation of NPR1 Condensates Promotes Cell Survival during the Plant Immune Response. PMID:32810437
Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages. PMID:32694584
Event-specific qualitative polymerase chain reaction analysis for two T-DNA copies in genetically modified orange Petunia. PMID:32684656
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook. PMID:32662816
Genome-wide identification and characterization of Solanum tuberosum BiP genes reveal the role of the promoter architecture in BiP gene diversity. PMID:32647371
CRISPR/Cas9-targeted mutagenesis of the tomato susceptibility gene PMR4 for resistance against powdery mildew. PMID:32560695
Ectopic expression of miRNA172 in tomato (Solanum lycopersicum) reveals novel function in fruit development through regulation of an AP2 transcription factor. PMID:32560687
Transcriptional Basis for Differential Thermosensitivity of Seedlings of Various Tomato Genotypes. PMID:32560080
Genome-wide analysis of NDR1/HIN1-like genes in pepper (Capsicum annuum L.) and functional characterization of CaNHL4 under biotic and abiotic stresses. PMID:32528705
Genome-wide identification and characterisation of Aquaporins in Nicotiana tabacum and their relationships with other Solanaceae species. PMID:32517797
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks. PMID:32316247
Linking crop traits to transcriptome differences in a progeny population of tetraploid potato. PMID:32183694
A Scanning Electron Micrograph-based Resource for Identification of Loci Involved in Epidermal Development in Tomato: Elucidation of a New Function for the Mixta-like Transcription Factor in Leaves. PMID:32169962
Co-expression of human calreticulin significantly improves the production of HIV gp140 and other viral glycoproteins in plants. PMID:32096288
Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum). PMID:32028643
Improved protocols for BAC insert DNA isolation, BAC end sequencing and FISH for construction of BAC based physical map of genes on the chromosomes. PMID:32020430
NbCycB2 represses Nbwo activity via a negative feedback loop in tobacco trichome development. PMID:31990970
Concomitant phytonutrient and transcriptome analysis of mature fruit and leaf tissues of tomato (Solanum lycopersicum L. cv. Oregon Spring) grown using organic and conventional fertilizer. PMID:31931517
Detoxification of the solanaceous phytoalexins rishitin, lubimin, oxylubimin and solavetivone via a cytochrome P450 oxygenase. PMID:31884882
Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers. PMID:31861938
An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species. PMID:31774397
Mutually Regulated AP2/ERF Gene Clusters Modulate Biosynthesis of Specialized Metabolites in Plants. PMID:31727678
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
Genome sequences of horticultural plants: past, present, and future. PMID:31645966
Candidate Gene Networks for Acylsugar Metabolism and Plant Defense in Wild Tomato Solanum pennellii. PMID:31628166
Identification of Transgene-Free CRISPR-Edited Plants of Rice, Tomato, and Arabidopsis by Monitoring DsRED Fluorescence in Dry Seeds. PMID:31620160
Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum. PMID:31574992
Environmental and epigenetic regulation of Rider retrotransposons in tomato. PMID:31525177
The RabGAP Gene Family in Tomato (Solanum lycopersicum) and Wild Relatives: Identification, Interaction Networks, and Transcriptional Analysis during Plant Development and in Response to Salt Stress. PMID:31450820
Targeted insertion of large DNA sequences by homology-directed repair or non-homologous end joining in engineered tobacco BY-2 cells using designed zinc finger nucleases. PMID:31360827
Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT. PMID:31324144
The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes. PMID:31296160
HD-AGPs as Speciation Genes: Positive Selection on a Proline-Rich Domain in Non-Hybridizing Species of Petunia, Solanum, and Nicotiana. PMID:31288469
The Tomato Translational Landscape Revealed by Transcriptome Assembly and Ribosome Profiling. PMID:31248964
Implications of region-specific gene expression for development of the partially fused petunia corolla. PMID:31183889
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus. PMID:31114006
CRISPR/Cas9-mediated knockout of the RDR6 gene in Nicotiana benthamiana for efficient transient expression of recombinant proteins. PMID:31065786
Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp. PMID:31039176
A quick guide for student-driven community genome annotation. PMID:30943207
An E3 ubiquitin ligase from Nicotiana benthamiana targets the replicase of Bamboo mosaic virus and restricts its replication. PMID:30924604
Assessment of Genetic Differentiation and Linkage Disequilibrium in Solanum pimpinellifolium Using Genome-Wide High-Density SNP Markers. PMID:30858236
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana. PMID:30733563
Combining bioinformatics and conventional PCR optimization strategy for one-time design of high-specificity primers for WRKY gene family using unigene database. PMID:30725349
PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins. PMID:30555515
Pivotal Roles of Cryptochromes 1a and 2 in Tomato Development and Physiology. PMID:30541876
Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine. PMID:30497367
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. PMID:30395277
New insights into tomato microRNAs. PMID:30375421
A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato. PMID:30364213
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. PMID:30353370
The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. PMID:30349549
Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites. PMID:30347842
Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection. PMID:30340407
Regulation of Root Angle and Gravitropism. PMID:30322904
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Tomato ATP-Binding Cassette Transporter SlABCB4 Is Involved in Auxin Transport in the Developing Fruit. PMID:30104476
Synteny-Based Development of CAPS Markers Linked to the Sweet kernel LOCUS, Controlling Amygdalin Accumulation in Almond (Prunus dulcis (Mill.) D.A.Webb). PMID:30065184
Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PMID:30048467
Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress. PMID:30006488
CRISPR/Cas9-mediated knockout of six glycosyltransferase genes in Nicotiana benthamiana for the production of recombinant proteins lacking β-1,2-xylose and core α-1,3-fucose. PMID:29969180
QTLTableMiner++: semantic mining of QTL tables in scientific articles. PMID:29801439
The intracellular nucleotide-binding leucine-rich repeat receptor (SlNRC4a) enhances immune signalling elicited by extracellular perception. PMID:29790585
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases. PMID:29762652
The parthenocarpic gene Pat-k is generated by a natural mutation of SlAGL6 affecting fruit development in tomato (Solanum lycopersicum L.). PMID:29699487
GAN: a platform of genomics and genetics analysis and application in Nicotiana. PMID:29688356
Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants. PMID:29681748
The nonstop decay and the RNA silencing systems operate cooperatively in plants. PMID:29672715
Global gene regulation in tomato plant (Solanum lycopersicum) responding to vector (Bactericera cockerelli) feeding and pathogen ('Candidatus Liberibacter solanacearum') infection. PMID:29619663
Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Physalis peruviana L.). PMID:29616069
Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host's Transcriptome: The Tobacco Etch Potyvirus-Tobacco Case Study. PMID:29562354
BIFURCATE FLOWER TRUSS: a novel locus controlling inflorescence branching in tomato contains a defective MAP kinase gene. PMID:29509915
WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta. PMID:29377467
Potato Mop-Top Virus Co-Opts the Stress Sensor HIPP26 for Long-Distance Movement. PMID:29374107
At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. PMID:29298836
Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance. PMID:29272270
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435
Marker Development for Phylogenomics: The Case of Orobanchaceae, a Plant Family with Contrasting Nutritional Modes. PMID:29218053
High-throughput SuperSAGE for gene expression analysis of Nicotiana tabacum-Rhizoctonia solani interaction. PMID:29162149
PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes. PMID:29156057
Genome-wide identification and expression analysis of glutathione S-transferase gene family in tomato: Gaining an insight to their physiological and stress-specific roles. PMID:29095889
Genome-wide identification and expression analysis of E2 ubiquitin-conjugating enzymes in tomato. PMID:28819320
Transcriptome profiling of tobacco (Nicotiana tabacum) pollen and pollen tubes. PMID:28784084
Analysis of the ZAR1 Immune Complex Reveals Determinants for Immunity and Molecular Interactions. PMID:28652264
A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency. PMID:28625162
The PhytoClust tool for metabolic gene clusters discovery in plant genomes. PMID:28486689
Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers. PMID:28438120
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
The Tomato Expression Atlas. PMID:28379331
Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem. PMID:28317896
Genetic Transformation and Genomic Resources for Next-Generation Precise Genome Engineering in Vegetable Crops. PMID:28275380
RXLR Effector AVR2 Up-Regulates a Brassinosteroid-Responsive bHLH Transcription Factor to Suppress Immunity. PMID:28270626
Gene expression profiles predictive of cold-induced sweetening in potato. PMID:28236275
Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases. PMID:28207764
Use of modern tomato breeding germplasm for deciphering the genetic control of agronomical traits by Genome Wide Association study. PMID:28188333
Chloroplast genome resources and molecular markers differentiate rubber dandelion species from weedy relatives. PMID:28152978
TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. PMID:28111364
Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.). PMID:28056783
Cultivar-Based Introgression Mapping Reveals Wild Species-Derived Pm-0, the Major Powdery Mildew Resistance Locus in Squash. PMID:27936008
Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing. PMID:27871227
Human promyelocytic leukemia protein is targeted to distinct subnuclear domains in plant nuclei and colocalizes with nucleolar constituents in a SUMO-dependent manner. PMID:27833854
Plant Reactome: a resource for plant pathways and comparative analysis. PMID:27799469
PMDBase: a database for studying microsatellite DNA and marker development in plants. PMID:27733507
Tomato phyE Is Required for Shade Avoidance in the Absence of phyB1 and phyB2. PMID:27695458
Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum. PMID:27695302
MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms. PMID:27604696
SENSITIVE TO FREEZING2 Aides in Resilience to Salt and Drought in Freezing-Sensitive Tomato. PMID:27600812
Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data. PMID:27515824
Comparison between Arabidopsis and Rice for Main Pathways of K(+) and Na(+) Uptake by Roots. PMID:27458473
A comprehensive view of the web-resources related to sericulture. PMID:27307138
Genomics: The language of flowers. PMID:27281204
Development of a laser capture microscope-based single-cell-type proteomics tool for studying proteomes of individual cell layers of plant roots. PMID:27280026
Bioinformatics resources for pollen. PMID:27271281
The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs. PMID:27193058
JBrowse: a dynamic web platform for genome visualization and analysis. PMID:27072794
Multiscale Metabolic Modeling of C4 Plants: Connecting Nonlinear Genome-Scale Models to Leaf-Scale Metabolism in Developing Maize Leaves. PMID:26990967
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. PMID:26989146
Are PECTIN ESTERASE INHIBITOR Genes Involved in Mediating Resistance to Rhynchosporium commune in Barley? PMID:26937960
Combined Use of Molecular Markers and High-Resolution Melting (HRM) to Assess Chromosome Dosage in Potato Hybrids. PMID:26663623
Suppression of the D-class MADS-box AGL11 gene triggers seedlessness in fleshy fruits. PMID:26563346
The Tomato MIXTA-Like Transcription Factor Coordinates Fruit Epidermis Conical Cell Development and Cuticular Lipid Biosynthesis and Assembly. PMID:26443676
Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species. PMID:26355020
Tomato R2R3-MYB Proteins SlANT1 and SlAN2: Same Protein Activity, Different Roles. PMID:26308527
Tomato Sl3-MMP, a member of the Matrix metalloproteinase family, is required for disease resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000. PMID:26070456 -
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
PubMed citations: 113.
113 articles citing: The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
Breedbase: a digital ecosystem for modern plant breeding. PMID:35385099
Germplasm Resources and Strategy for Genetic Breeding of Lycium Species: A Review. PMID:35222468
DeepLRR: An Online Webserver for Leucine-Rich-Repeat Containing Protein Characterization Based on Deep Learning. PMID:35009139
Genome-Wide Investigation of N6-Methyladenosine Regulatory Genes and Their Roles in Tea (Camellia sinensis) Leaves During Withering Process. PMID:34211493
Gene Expression Analysis of Microtubers of Potato Solanum tuberosum L. Induced in Cytokinin Containing Medium and Osmotic Stress. PMID:33925316
High density genotype storage for plant breeding in the Chado schema of Breedbase. PMID:33175872
Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit. PMID:32351787
The res (restored cell structure by salinity) tomato mutant reveals the role of the DEAD-box RNA helicase SlDEAD39 in plant development and salt response. PMID:32329086
De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis. PMID:30689773
Regulation of Root Angle and Gravitropism. PMID:30322904
TM8 represses developmental timing in Nicotiana benthamiana and has functionally diversified in angiosperms. PMID:29929474
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen. PMID:29884134
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases. PMID:29762652
Evolution of Eukaryal and Archaeal Pseudouridine Synthase Pus10. PMID:29349599
Transcriptome profiling of tobacco (Nicotiana tabacum) pollen and pollen tubes. PMID:28784084
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. PMID:28729549
In silico analysis reveals widespread presence of three gene families, MAPK, MAPKK and MAPKKK, of the MAPK cascade from crop plants of Solanaceae in comparison to the distantly-related syntenic species from Rubiaceae, coffee. PMID:28603666
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
Alternative splicing in tomato pollen in response to heat stress. PMID:28025318
Intron gain by tandem genomic duplication: a novel case in a potato gene encoding RNA-dependent RNA polymerase. PMID:27547574
Agroinfiltration contributes to VP1 recombinant protein degradation. PMID:27459147
Indel Group in Genomes (IGG) Molecular Genetic Markers. PMID:27436831
Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae. PMID:27364496
Arbuscular mycorrhiza Symbiosis Induces a Major Transcriptional Reprogramming of the Potato SWEET Sugar Transporter Family. PMID:27148312
A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans. PMID:27091363
Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening. PMID:27002971
HsfA2 Controls the Activity of Developmentally and Stress-Regulated Heat Stress Protection Mechanisms in Tomato Male Reproductive Tissues. PMID:26917685
A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae). PMID:26828929
Acylsugar Acylhydrolases: Carboxylesterase-Catalyzed Hydrolysis of Acylsugars in Tomato Trichomes. PMID:26811191
RNA-sequencing Reveals Global Transcriptomic Changes in Nicotiana tabacum Responding to Topping and Treatment of Axillary-shoot Control Chemicals. PMID:26670135
Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. PMID:26656885
A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages. PMID:26496718
A Deluge of Complex Repeats: The Solanum Genome. PMID:26241045
In silico prediction of proteins related to xyloglucan fucosyltransferases in Solanaceae genomes. PMID:26176901
High-resolution mapping of a major effect QTL from wild tomato Solanum habrochaites that influences water relations under root chilling. PMID:26044122
Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing. PMID:25798050
Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives. PMID:25780758
An ontology approach to comparative phenomics in plants. PMID:25774204
Genetic basis and detection of unintended effects in genetically modified crop plants. PMID:25716164
Expression of heterologous xyloglucan xylosyltransferases in Arabidopsis to investigate their role in determining xyloglucan xylosylation substitution patterns. PMID:25604050
POEAS: Automated Plant Phenomic Analysis Using Plant Ontology. PMID:25574136
Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. PMID:25505034
Multiple QTL for horticultural traits and quantitative resistance to Phytophthora infestans linked on Solanum habrochaites chromosome 11. PMID:25504736
solGS: a web-based tool for genomic selection. PMID:25495537
Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant. PMID:25491265
The grapevine gene nomenclature system. PMID:25481684
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding. PMID:25428362
Development of a gene-centered ssr atlas as a resource for papaya (Carica papaya) marker-assisted selection and population genetic studies. PMID:25393538
The coffee genome hub: a resource for coffee genomes. PMID:25392413
Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato. PMID:25350113
Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves. PMID:25324298
Quantitative genetic analysis indicates natural selection on leaf phenotypes across wild tomato species (Solanum sect. Lycopersicon; Solanaceae). PMID:25298519
Sterol side chain reductase 2 is a key enzyme in the biosynthesis of cholesterol, the common precursor of toxic steroidal glycoalkaloids in potato. PMID:25217510
RNA sequencing analysis reveals transcriptomic variations in tobacco (Nicotiana tabacum) leaves affected by climate, soil, and tillage factors. PMID:24733065
Transcriptomic analysis of Petunia hybrida in response to salt stress using high throughput RNA sequencing. PMID:24722556
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
The hypervariable amino-terminus of P1 protease modulates potyviral replication and host defense responses. PMID:24603811
Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research. PMID:24466070
Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases. PMID:24363285
Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity. PMID:24359686
De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters. PMID:24324652
Genome-wide identification and expression analysis of aquaporins in tomato. PMID:24260152
MEGANTE: a web-based system for integrated plant genome annotation. PMID:24253915
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. PMID:24225315
Linkage relationships among multiple QTL for horticultural traits and late blight (P. infestans) resistance on chromosome 5 introgressed from wild tomato Solanum habrochaites. PMID:24122052
gff2sequence, a new user friendly tool for the generation of genomic sequences. PMID:24020993
RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs. PMID:23921629
The identification of two arabinosyltransferases from tomato reveals functional equivalency of xyloglucan side chain substituents. PMID:23893172
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
Linking the potato genome to the conserved ortholog set (COS) markers. PMID:23758607
The banana genome hub. PMID:23707967
Whole genome profiling physical map and ancestral annotation of tobacco Hicks Broadleaf. PMID:23672264
Updating the Micro-Tom TILLING platform. PMID:23641180
Functional genomics of tomato in a post-genome-sequencing phase. PMID:23641177
Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. PMID:23599271
A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication. PMID:23576511
An active ac/ds transposon system for activation tagging in tomato cultivar m82 using clonal propagation. PMID:23569107
The Tomato Yellow Leaf Curl Virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA-dependent RNA polymerases. PMID:23555305
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. PMID:23471459
Orchidstra: an integrated orchid functional genomics database. PMID:23324169
Transcriptional regulation of tocopherol biosynthesis in tomato. PMID:23247837
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
The tomato RLK superfamily: phylogeny and functional predictions about the role of the LRRII-RLK subfamily in antiviral defense. PMID:23198823
Design of a tobacco exon array with application to investigate the differential cadmium accumulation property in two tobacco varieties. PMID:23190529
Identification of single-copy orthologous genes between Physalis and Solanum lycopersicum and analysis of genetic diversity in Physalis using molecular markers. PMID:23166835
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. PMID:23161682
Gene profiling in partially resistant and susceptible near-isogenic tomatoes in response to late blight in the field. PMID:23127185
Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716. PMID:23117718
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. PMID:23110892
Fractionation, stability, and isolate-specificity of QTL for resistance to Phytophthora infestans in cultivated tomato (Solanum lycopersicum). PMID:23050225
Identification of a BAHD acetyltransferase that produces protective acyl sugars in tomato trichomes. PMID:22988115
Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis. PMID:22987884
Characterization of the procera tomato mutant shows novel functions of the SlDELLA protein in the control of flower morphology, cell division and expansion, and the auxin-signaling pathway during fruit-set and development. PMID:22942390
RNA trafficking in parasitic plant systems. PMID:22936942
The tomato genome fleshed out. PMID:22871715
Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles. PMID:22871151
Ontologies as integrative tools for plant science. PMID:22847540
Evolution of the land plant exocyst complexes. PMID:22826714
Characterization of a flavonol 3-O-methyltransferase in the trichomes of the wild tomato species Solanum habrochaites. PMID:22711283
The eIF4F and eIFiso4F Complexes of Plants: An Evolutionary Perspective. PMID:22611336
Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. PMID:22570076
Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches. PMID:22307966
Genomic organization, phylogenetic comparison and differential expression of the SBP-box family of transcription factors in tomato. PMID:22160465
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
MetaBase--the wiki-database of biological databases. PMID:22139927
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. PMID:22135296
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. PMID:22120662
Phytozome: a comparative platform for green plant genomics. PMID:22110026
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. PMID:22102576
PLEXdb: gene expression resources for plants and plant pathogens. PMID:22084198
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. PMID:22045915
Tripal: a construction toolkit for online genome databases. PMID:21959868
TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections. PMID:21258066 - http://dx.doi.org/10.1093/nar/
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genome
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
small molecule
metasource: Fairsharing.org
version: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
est
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
solanaceae
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
chromosome
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
eggplant
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
gene
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
mrna
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
molecular biology
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
pepper
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
potato
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
protein
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
sequencing
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
tomato
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
unigenes
metasource: re3data.org
version: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:36.844554
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
small molecule
metasource: Fairsharing.orgversion: FAIRsharing.org: SGN; Sol Genomics Network; DOI: https://doi.org/10.25504/FAIRsharing.3zqvaf; Last edited: Feb. 24, 2021, 4:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
est
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
solanaceae
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
chromosome
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
eggplant
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
gene
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
mrna
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
molecular biology
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
pepper
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
potato
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
protein
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
sequencing
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
tomato
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
unigenes
metasource: re3data.orgversion: re3data.org: SOL Genomics Network; editing status 2021-10-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS95 last accessed: 2022-11-04
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:36.844554
genome network model pathway model small molecule plant other plants est solanaceae chromosome eggplant gene mrna molecular biology pepper potato protein sequencing tomato unigenes molecular interactions, pathways and networks mapping rna sequence genotype and phenotype
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