Other names: ceres
CERES is a cryo-EM re-refinement system for continuous improvement of deposited models.
molecular modelling electron microscopy
The CryoEM Ontology for describing objects and workflows in Single Particle Analysis by Cryo Electron Microscopy.
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a publ ...
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. Th ...
The Electron Microscopy Exchange (EMX) format is a standard for metadata exchange in 3D electron microscopy.
Repository of workflows for image processing in cryo-electron microscopy using Scipion.
3D cryo-electron microscopy maps, models and metadata
webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, li ...
A service for evaluating the electron density (and, indirectly, some aspects of the model quality) of crystal structures deposited in the Protein Data Bank. In addition to electron density maps and to ...
Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataResource project ...
The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes.
The Open Microscopy Environment Ontology (OME-OWL) is a light microscopy imaging ontology that has been developed through translation of the OME data model. The aim of this ontology is to support mult ...
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinements have been performed using statistical torsion angle potential and structurally- or experimentally- ...
Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is ...
EMDataBank.org is a resource for deposition and retrieval of cryoEM maps, models and associated metadata. The resource unifies public access to the two major archives containing EM-based structural da ...
CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; prepare and separate material for further analys ...
Covalent Inhibitor DataBase
A repository of image / SPM data to support users of the Centre for Cell Imaging, University of Liverpool.
ConoMode is a database dedicated to collection of the complex 3D structures of conopeptides binding with their target proteins.
Automated annotation of amino acid biosynthesis | Abstract GapMind is a web-based tool for annotating amino acid biosynthesis in bacteria and archaea ( http: papers.genomics.lbl gov gaps ). GapMind in ...
Despite the known existence of distant-acting cis-regulatory elements in the human genome, only a small fraction of these elements has been identified and experimentally characterized in vivo. This pa ...