Recommended reporting guidelines for life science resources
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Recommended reporting guidelines for life science resources
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Reporting guidelines for research resources
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Recommended reporting guidelines for life science resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Reporting guidelines for research resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Other names: Reporting guidelines for research resources
Names
More detailed information about this field from each metasource.
Recommended reporting guidelines for life science resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Reporting guidelines for research resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Recommended reporting guidelines for research resources frequently used in biomedical research, including antibodies, constructs, cell lines, model organisms and knockdown reagents. The purpose of these guidelines is to determine what information is required to uniquely identify a resource, either using "extrinsic" identifiers or providing sufficient metadata about "intrinsic" attributes to identify sufficiently characterize a resource. The Resource Identification Initiative was developed as an extension of these guidelines.
Description
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Recommended reporting guidelines for research resources frequently used in biomedical research, including antibodies, constructs, cell lines, model organisms and knockdown reagents. The purpose of these guidelines is to determine what information is required to uniquely identify a resource, either using "extrinsic" identifiers or providing sufficient metadata about "intrinsic" attributes to identify sufficiently characterize a resource. The Resource Identification Initiative was developed as an extension of these guidelines.
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
http://www.force11.org/node/4433Webpage
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http://www.force11.org/node/4433
metasource: Fairsharing.orgversion: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
On the reproducibility of science: unique identification of research resources in the biomedical literature
PMID: 24032093
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Resource Identification Initiative: A cultural shift in publishing
PMID: 26594330
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Resource Identification Initiative: A Cultural Shift in Publishing
PMID: 26599696
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
On the reproducibility of science: unique identification of research resources in the biomedical literature
PMID: 24032093
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Resource Identification Initiative: A cultural shift in publishing
PMID: 26594330
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Resource Identification Initiative: A Cultural Shift in Publishing
PMID: 26599696
metasource: Fairsharing.org
version: FAIRsharing.org: Reporting guidelines for research resources; Recommended reporting guidelines for life science resources; DOI: https://doi.org/10.25504/FAIRsharing.6bsfgf; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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On the reproducibility of science: unique identification of research resources in the biomedical literature
PubMed citations: 98.
98 articles citing: On the reproducibility of science: unique identification of research resources in the biomedical literature
Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows. PMID:35792600
Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality. PMID:35759334
Genetic quality: a complex issue for experimental study reproducibility. PMID:35751794
A decade of GigaScience: What can be learned from half a million RRIDs in the scientific literature? PMID:35701373
Establishment, authenticity, and characterization of cervical cancer cell lines. PMID:35692560
OpenWorkstation: A modular open-source technology for automated in vitro workflows. PMID:35498237
MALDI-TOF-MS-Based Identification of Monoclonal Murine Anti-SARS-CoV-2 Antibodies within One Hour. PMID:35466280
The Learning Curve of Murine Subretinal Injection Among Clinically Trained Ophthalmic Surgeons. PMID:35275207
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
Minimal Information about MHC Multimers (MIAMM). PMID:35042788
Antibody Watch: Text mining antibody specificity from the literature. PMID:34043624
Towards FAIR protocols and workflows: the OpenPREDICT use case. PMID:33816932
Temporal Stability and Genetic Diversity of 48-Year-Old T-Series Phages. PMID:33594003
Highly Versatile Cloud-Based Automation Solution for the Remote Design and Execution of Experiment Protocols during the COVID-19 Pandemic. PMID:33210978
The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods. PMID:33196023
The Antibody Society's antibody validation webinar series. PMID:32748696
Improving transparency and scientific rigor in academic publishing. PMID:32721132
The effect of repeated passaging on the susceptibility of human proximal tubular HK-2 cells to toxic compounds. PMID:32672047
The effect of journal guidelines on the reporting of antibody validation. PMID:32547887
What are innovations in peer review and editorial assessment for? PMID:32362286
Fast Confirmation of Antibody Identity by MALDI-TOF MS Fingerprints. PMID:32224944
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. PMID:32219223
snapMRF: GPU-accelerated magnetic resonance fingerprinting dictionary generation and matching using extended phase graphs. PMID:31740194
Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. PMID:31696236
On the Necessity of Validating Antibodies in the Immunohistochemistry Literature. PMID:31080409
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. PMID:30693867
Quantity and Reporting Quality of Kidney Research. PMID:30545982
Improving transparency and scientific rigor in academic publishing. PMID:30506879
Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported. PMID:30325922
Introducing the Affinity Binder Knockdown Initiative⿿A public⿿private partnership for validation of affinity reagents. PMID:29900101
A guideline for reporting experimental protocols in life sciences. PMID:29868256
Biocuration: Distilling data into knowledge. PMID:29659566
Baseline mRNA expression differs widely between common laboratory strains of zebrafish. PMID:29555936
While it is not deliberate, much of today's biomedical research contains logical and technical flaws, showing a need for corrective action. PMID:29511367
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
Ten Basic Rules of Antibody Validation. PMID:29467569
Modeling sources of interlaboratory variability in electrophysiological properties of mammalian neurons. PMID:29357465
Counting Caenorhabditis elegans: Protocol Optimization and Applications for Population Growth and Toxicity Studies in Liquid Medium. PMID:29343752
A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years. PMID:29228189
Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice. PMID:29136208
Indicators for the use of robotic labs in basic biomedical research: a literature analysis. PMID:29134146
Enhancing Scientific Foundations to Ensure Reproducibility: A New Paradigm. PMID:28958817
Quality assurance and best research practices for non-regulated veterinary clinical studies. PMID:28814296
A computational modelling framework to quantify the effects of passaging cell lines. PMID:28750084
Biomedical text mining for research rigor and integrity: tasks, challenges, directions. PMID:28633401
Accelerating Biomedical Discoveries through Rigor and Transparency. PMID:28575443
An evaluation of the status of living collections for plant, environmental, and microbial research. PMID:28569255
Toward standard practices for sharing computer code and programs in neuroscience. PMID:28542156
Reproducible and reusable research: are journal data sharing policies meeting the mark? PMID:28462024
Propelling the paradigm shift from reductionism to systems nutrition. PMID:28138347
The reproducibility of biomedical research: Sleepers awake! PMID:27896142
Non-clinical studies required for new drug development - Part I: early in silico and in vitro studies, new target discovery and validation, proof of principles and robustness of animal studies. PMID:27783811
The health care and life sciences community profile for dataset descriptions. PMID:27602295
Navigating the Phenotype Frontier: The Monarch Initiative. PMID:27516611
Authentication: A Standard Problem or a Problem of Standards? PMID:27300550
NIH Peer Review: Scored Review Criteria and Overall Impact. PMID:27239158
RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods. PMID:27151636
The Resource Identification Initiative: a cultural shift in publishing. PMID:27110440
Quality Issues of Research Antibodies. PMID:27013861
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model. PMID:26989150
Reporting transparency: making the ethical mandate explicit. PMID:26979591
Editorial: Reporting guidelines for psychopharmacology. PMID:26915651
Managing risks in drug discovery: reproducibility of published findings. PMID:26883784
How to avoid pitfalls in antibody use. PMID:26834988
Reproducibility and conflicts in immune epitope data. PMID:26678806
Developing high-quality mouse monoclonal antibodies for neuroscience research - approaches, perspectives and opportunities. PMID:26644354
Research antibodies: do not use them to stain your reputation. PMID:26628686
Antibody anarchy: A call to order. PMID:26607547
The Resource Identification Initiative: A Cultural Shift in Publishing. PMID:26599696
The Resource Identification Initiative: A Cultural Shift in Publishing. PMID:26589523
Public Data Archiving in Ecology and Evolution: How Well Are We Doing? PMID:26556502
Bridging Translation by Improving Preclinical Study Design in AKI. PMID:26538634
Editorial: Reproducibility in Research: A Cautionary Tale and Lessons Not Learned. PMID:26325008
Use of semantic workflows to enhance transparency and reproducibility in clinical omics. PMID:26289940
The trouble with apparent diffusion coefficient papers. PMID:26229672
Achieving human and machine accessibility of cited data in scholarly publications. PMID:26167542
From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PMID:26154165
The center for expanded data annotation and retrieval. PMID:26112029
Disease insights through cross-species phenotype comparisons. PMID:26092691
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data. PMID:26092690
The Economics of Reproducibility in Preclinical Research. PMID:26057340
Reproducibility: changing the policies and culture of cell line authentication. PMID:26020501
The hemiptera (insecta) of Canada: constructing a reference library of DNA barcodes. PMID:25923328
Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types. PMID:25810482
Editorial: preclinical data reproducibility for R&D - the challenge for neuroscience. PMID:25674489
Reproducibility: Standardize antibodies used in research. PMID:25652980
Preclinical data reproducibility for R&D--the challenge for neuroscience. PMID:25585680
Cell Biology. Fixing problems with cell lines. PMID:25525228
Variations in Scientific Data Production: What Can We Learn from #Overlyhonestmethods? PMID:25524321
An open investigation of the reproducibility of cancer biology research. PMID:25490932
Addgene: making materials sharing "science as usual". PMID:25387006
Do corresponding authors take responsibility for their work? A covert survey. PMID:25123243
The increasing urgency for standards in basic biologic research. PMID:25035389
OMICtools: an informative directory for multi-omic data analysis. PMID:25024350
Sources of error in the retracted scientific literature. PMID:24928194
ITK: enabling reproducible research and open science. PMID:24600387
Policy: NIH plans to enhance reproducibility. PMID:24482835
Reporting of results from animal studies. PMID:24284018 -
The Resource Identification Initiative: A cultural shift in publishing
PubMed citations: 26.
26 articles citing: The Resource Identification Initiative: A cultural shift in publishing
Standard metadata for 3D microscopy. PMID:35896564
Cell line authentication: a necessity for reproducible biomedical research. PMID:35758134
Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database. PMID:35735230
A decade of GigaScience: What can be learned from half a million RRIDs in the scientific literature? PMID:35701373
MITI minimum information guidelines for highly multiplexed tissue images. PMID:35277708
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Antibody Watch: Text mining antibody specificity from the literature. PMID:34043624
Creating clear and informative image-based figures for scientific publications. PMID:33788834
The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. PMID:33494105
Ensuring accurate resource identification. PMID:32494032
Fast Confirmation of Antibody Identity by MALDI-TOF MS Fingerprints. PMID:32224944
DAISY: A Data Information System for accountability under the General Data Protection Regulation. PMID:31800037
Spatial proteomics: a powerful discovery tool for cell biology. PMID:30659282
Introducing the Affinity Binder Knockdown Initiative⿿A public⿿private partnership for validation of affinity reagents. PMID:29900101
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Data sharing in psychology. PMID:29481105
DataMed - an open source discovery index for finding biomedical datasets. PMID:29346583
Using semantics for representing experimental protocols. PMID:29132408
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study. PMID:29036270
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PMID:28662064
Reproducibility2020: Progress and priorities. PMID:28620458
Assessing the uptake of persistent identifiers by research infrastructure users. PMID:28394907
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. PMID:28232121
How to avoid pitfalls in antibody use. PMID:26834988
Reproducibility and conflicts in immune epitope data. PMID:26678806
Developing high-quality mouse monoclonal antibodies for neuroscience research - approaches, perspectives and opportunities. PMID:26644354 -
The Resource Identification Initiative: A Cultural Shift in Publishing
PubMed citations: 17.
17 articles citing: The Resource Identification Initiative: A Cultural Shift in Publishing
The Anti-Glucocorticoid Receptor Antibody Clone 5E4: Raising Awareness of Unspecific Antibody Binding. PMID:35563440
Conference report: Biocuration 2021 Virtual Conference. PMID:35486126
Minimal Information about MHC Multimers (MIAMM). PMID:35042788
Misidentified biomedical resources: Journal guidelines are not a quick fix. PMID:34807460
Open science saves lives: lessons from the COVID-19 pandemic. PMID:34090351
The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods. PMID:33196023
Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0. PMID:32663221
Engineered Ovarian Cancer Cell Lines for Validation of CAR T Cell Function. PMID:32293122
Semi-automated fact-checking of nucleotide sequence reagents in biomedical research publications: The Seek & Blastn tool. PMID:30822319
Enhanced validation of antibodies for research applications. PMID:30297845
Revisiting the scientific method to improve rigor and reproducibility of immunohistochemistry in reproductive science. PMID:29688318
Biomedical text mining for research rigor and integrity: tasks, challenges, directions. PMID:28633401
An evaluation of the status of living collections for plant, environmental, and microbial research. PMID:28569255
Data Publications Correlate with Citation Impact. PMID:27679558
RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods. PMID:27151636
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model. PMID:26989150
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