PGG.Han

PGG.Han is a population genome database serving as the central repository for the genomic data of the Han Chinese Genome Initiative (Phase I). In its current version, the PGG.Han archives whole-genome sequences or high-density genome-wide single-nucleotide variants (SNVs) of 114 783 Han Chinese individuals (a.k.a. the Han100K), representing geographical sub-populations covering 33 of the 34 administrative divisions of China, as well as Singapore. The PGG.Han provides: (i) an interactive interface for visualization of the fine-scale genetic structure of the Han Chinese population; (ii) genome-wide allele frequencies of hierarchical sub-populations; (iii) ancestry inference for individual samples and controlling population stratification based on nested ancestry informative markers (AIMs) panels; (iv) population-structure-aware shared control data for genotype-phenotype association studies (e.g. GWASs) and (v) a Han-Chinese-specific reference panel for genotype imputation.

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PGG.Han: the Han Chinese genome database and analysis platform
PMID: 31584086

metasource: Fairsharing.org
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• PGG.Han: the Han Chinese genome database and analysis platform PubMed citations: 16.

  16 articles citing: PGG.Han: the Han Chinese genome database and analysis platform

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  A rare genetic variant in the cleavage site of prepro-orexin is associated with idiopathic hypersomnia. PMID:35414074

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  PDE4B Proposed as a High Myopia Susceptibility Gene in Chinese Population. PMID:35116054

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  Genetic Polymorphism of Drug Metabolic Gene CYPs, VKORC1, NAT2, DPYD and CHST3 of Five Ethnic Minorities in Heilongjiang Province, Northeast China. PMID:34876832

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  DEL in China: the D antigen among serologic RhD-negative individuals. PMID:34670559

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  How understudied populations have contributed to our understanding of Alzheimer's disease genetics. PMID:33889936

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  Association of Interleukin-1α Functional Polymorphism with Risk of Chronic Periodontitis in Han Chinese Population. PMID:33854406

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  Combined Low-/High-Density Modern and Ancient Genome-Wide Data Document Genomic Admixture History of High-Altitude East Asians. PMID:33643377

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  RET compound inheritance in Chinese patients with Hirschsprung disease: lack of penetrance from insufficient gene dysfunction. PMID:33433679

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  Population genomics of East Asian ethnic groups. PMID:33292737

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  Migraine as a Risk Factor for Peripheral Artery Occlusive Disease: A Population-Based Cohort Study. PMID:33218041

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  Whole genome sequencing data of multiple individuals of Pakistani descent. PMID:33051442

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  High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation. PMID:32781046

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  Genetic Reconstruction and Forensic Analysis of Chinese Shandong and Yunnan Han Populations by Co-Analyzing Y Chromosomal STRs and SNPs. PMID:32635262

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  Population genetic analysis of Shaanxi male Han Chinese population reveals genetic differentiation and homogenization of East Asians. PMID:32163678

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  The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604

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  Database Resources of the National Genomics Data Center in 2020. PMID:31702008

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allele frequency

metasource: Fairsharing.org
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genome-wide association study

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sequence variant

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single nucleotide polymorphism

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allele frequency genome-wide association study sequence variant single nucleotide polymorphism