Ontology for Genetic Disease Investigations
Names
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Ontology for Genetic Disease Investigations
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
OGDI
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
Names
More detailed information about this field from each metasource.
Ontology for Genetic Disease Investigations
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
OGDI
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
Names
More detailed information about this field from each metasource.
Ontology for Genetic Disease Investigations
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
OGDI
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
This ontology is used to model scientific investigation, especially Genome-Wide Association Studies (GWAS), to discover genetic susceptibility factors to disease, such as Diabetes. It models the genetic variants, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes: Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism (OGMD). Together, these three ontologies form the Ontology for Genetic Susceptibility Factor (OGSF), which is the project where information about this ontology is stored.
Description
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This ontology is used to model scientific investigation, especially Genome-Wide Association Studies (GWAS), to discover genetic susceptibility factors to disease, such as Diabetes. It models the genetic variants, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes: Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism (OGMD). Together, these three ontologies form the Ontology for Genetic Susceptibility Factor (OGSF), which is the project where information about this ontology is stored.
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
It is the ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) .
metasource: Biontology / Bioportalversion: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
Webpage:
https://code.google.com/archive/p/ogsf/Webpage
More detailed information about this field from each metasource.
https://code.google.com/archive/p/ogsf/
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence:
Name: BSD-3-Clause License (Modified BSD License) (New BSD License)Licence name
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BSD-3-Clause License (Modified BSD License) (New BSD License)
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
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https://opensource.org/licenses/BSD-3-Clause
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
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The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
PMID: 24963371
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf, http://www.academia.edu/213769/Ontology_of_Genetic_Susceptibility_Factors_to_Diabetes_Mellitus_OGSF-DM_
metasource: Biontology / Bioportal
version: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
Publications
More detailed information about this field from each metasource.
The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
PMID: 24963371
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf, http://www.academia.edu/213769/Ontology_of_Genetic_Susceptibility_Factors_to_Diabetes_Mellitus_OGSF-DM_
metasource: Biontology / Bioportalversion: 1.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OGDI
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The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
PubMed citations: 11.
11 articles citing: The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning. PMID:35649389
Causality assessment of adverse events following immunization: the problem of multifactorial pathology. PMID:32269767
A 2018 workshop: vaccine and drug ontology studies (VDOS 2018). PMID:31865905
Computational Advances in Drug Safety: Systematic and Mapping Review of Knowledge Engineering Based Approaches. PMID:31156424
Assessing the practice of biomedical ontology evaluation: Gaps and opportunities. PMID:29462669
Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia. PMID:27570653
Ontology-based Vaccine and Drug Adverse Event Representation and Theory-guided Systematic Causal Network Analysis toward Integrative Pharmacovigilance Research. PMID:27458549
Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors. PMID:27003817
Adversomics: a new paradigm for vaccine safety and design. PMID:25937189
OAE: The Ontology of Adverse Events. PMID:25093068
A 2013 workshop: vaccine and drug ontology studies (VDOS 2013). PMID:24650607 - http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf, http://www.academia.edu/213769/Ontology_of_Genetic_Susceptibility_Factors_to_Diabetes_Mellitus_OGSF-DM_
Tags:
Tags
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assay
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
diabetes mellitus
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome-wide association study
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence variant
metasource: Fairsharing.org
version: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
assay
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
diabetes mellitus
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome-wide association study
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence variant
metasource: Fairsharing.orgversion: FAIRsharing.org: OGDI; Ontology for Genetic Disease Investigations; DOI: https://doi.org/10.25504/FAIRsharing.xeh248; Last edited: Aug. 7, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
assay diabetes mellitus polymorphism genome genome-wide association study sequence variant
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