Online Resource for Community Annotation of Eukaryotes
Names
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Online Resource for Community Annotation of Eukaryotes
metasource: Fairsharing.org
version: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ORCAE
metasource: Fairsharing.org
version: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Online Resource for Community Annotation of Eukaryotes
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ORCAE
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Online Resource for Community Annotation of Eukaryotes
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ORCAE
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Online Resource for Community Annotation of Eukaryotes (ORCAE) is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. It is a gene-centric wiki-style annotation portal offering public access to a wide variety of plant, fungal and animal genomes. The basic setup of ORCAE is highly comparable to wiki systems such as MediaWiki, and the information page for each gene can be seen as a ‘topic’ page of a traditional text wiki.
Description
More detailed information about this field from each metasource.
The Online Resource for Community Annotation of Eukaryotes (ORCAE) is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. It is a gene-centric wiki-style annotation portal offering public access to a wide variety of plant, fungal and animal genomes. The basic setup of ORCAE is highly comparable to wiki systems such as MediaWiki, and the information page for each gene can be seen as a ‘topic’ page of a traditional text wiki.
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://bioinformatics.psb.ugent.be/orcae/Webpage
More detailed information about this field from each metasource.
http://bioinformatics.psb.ugent.be/orcae/
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
ORCAE: online resource for community annotation of eukaryotes
PMID: 23132114
metasource: Fairsharing.org
version: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
ORCAE: online resource for community annotation of eukaryotes
PMID: 23132114
metasource: Fairsharing.org
version: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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ORCAE: online resource for community annotation of eukaryotes
PubMed citations: 78.
78 articles citing: ORCAE: online resource for community annotation of eukaryotes
Genomic evidence that a sexually selected trait captures genome-wide variation and facilitates the purging of genetic load. PMID:35851852
A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago. PMID:35672295
Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals. PMID:35658860
Hydroxynitrile lyase defends Arabidopsis against Tetranychus urticae. PMID:35474139
β-Cyanoalanine synthase protects mites against Arabidopsis defenses. PMID:35348790
The APAF1_C/WD40 repeat domain-encoding gene from the sea lettuce Ulva mutabilis sheds light on the evolution of NB-ARC domain-containing proteins in green plants. PMID:35235070
Environmental and Circadian Regulation Combine to Shape the Rhythmic Selenoproteome. PMID:35159150
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments. PMID:35106561
De novo transcriptome sequencing of the northern fowl mite, Ornithonyssus sylviarum, shed light on parasitiform poultry mites evolution and its chemoreceptor repertoires. PMID:35032220
Adaptation of Temperate Seagrass to Arctic Light Relies on Seasonal Acclimatization of Carbon Capture and Metabolism. PMID:34925400
Deep-coverage spatiotemporal proteome of the picoeukaryote Ostreococcus tauri reveals differential effects of environmental and endogenous 24-hour rhythms. PMID:34593975
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments. PMID:34465293
Genome Wide MeDIP-Seq Profiling of Wild and Cultivated Olives Trees Suggests DNA Methylation Fingerprint on the Sensory Quality of Olive Oil. PMID:34371608
Signatures of Transcription Factor Evolution and the Secondary Gain of Red Algae Complexity. PMID:34356071
Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle. PMID:33827430
Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis). PMID:33710327
The medium-size noncoding RNA transcriptome of Ostreococcus tauri, the smallest living eukaryote, reveals a large family of small nucleolar RNAs displaying multiple genomic expression strategies. PMID:33575626
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba. PMID:33528570
RNAi gene knockdown in the poultry red mite, Dermanyssus gallinae (De Geer 1778), a tool for functional genomics. PMID:33461614
Histone modifications during the life cycle of the brown alga Ectocarpus. PMID:33397407
Twelve quick steps for genome assembly and annotation in the classroom. PMID:33180771
The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots. PMID:33013993
A Genomic Perspective on the Evolutionary Diversity of the Plant Cell Wall. PMID:32932717
VviERF6Ls: an expanded clade in Vitis responds transcriptionally to abiotic and biotic stresses and berry development. PMID:32646368
Anaerobic peroxisomes in Mastigamoeba balamuthi. PMID:31932444
Post-translational modifications of Drosophila melanogaster HOX protein, Sex combs reduced. PMID:31931520
SpliceFinder: ab initio prediction of splice sites using convolutional neural network. PMID:31881982
Cloning and Overexpression of Strictosidine β-D-Glucosidase Gene Short Sequence from Catharanthus roseus in Escherichia coli. PMID:31857971
Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.). PMID:31816089
ORCAE-AOCC: A Centralized Portal for the Annotation of African Orphan Crop Genomes. PMID:31757073
Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus. PMID:31744163
A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression. PMID:31640546
Simplified Transformation of Ostreococcus tauri Using Polyethylene Glycol. PMID:31130696
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus). PMID:31112613
A Magnesium Transport Protein Related to Mammalian SLC41 and Bacterial MgtE Contributes to Circadian Timekeeping in a Unicellular Green Alga. PMID:30791470
Long-Term Population Studies Uncover the Genome Structure and Genetic Basis of Xenobiotic and Host Plant Adaptation in the Herbivore Tetranychus urticae. PMID:30745439
Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae. PMID:30644818
Transcriptomic Plasticity in the Arthropod Generalist Tetranychus urticae Upon Long-Term Acclimation to Different Host Plants. PMID:30333191
Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage. PMID:30113623
Ten steps to get started in Genome Assembly and Annotation. PMID:29568489
Evolution of Daily Gene Co-expression Patterns from Algae to Plants. PMID:28751903
Genome sequence of the type strain CLIB 1764T (= CBS 14374T) of the yeast species Kazachstania saulgeensis isolated from French organic sourdough. PMID:28725555
RNAi-based reverse genetics in the chelicerate model Tetranychus urticae: A comparative analysis of five methods for gene silencing. PMID:28704448
Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification. PMID:28691262
Protocols for the delivery of small molecules to the two-spotted spider mite, Tetranychus urticae. PMID:28686745
Disruption of a horizontally transferred phytoene desaturase abolishes carotenoid accumulation and diapause in Tetranychus urticae. PMID:28674017
Emergence and evolution of an interaction between intrinsically disordered proteins. PMID:28398197
Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes. PMID:28379581
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PMID:28129330
Transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica. PMID:27996971
Photo-enzymatic repair of UVB-induced DNA damage in the two-spotted spider mite Tetranychus urticae. PMID:27873138
Complex Evolutionary Dynamics of Massively Expanded Chemosensory Receptor Families in an Extreme Generalist Chelicerate Herbivore. PMID:27797949
A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri. PMID:27788272
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. PMID:27242037
Composition and genomic organization of arthropod Hox clusters. PMID:27168931
Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton. PMID:27142620
Daily magnesium fluxes regulate cellular timekeeping and energy balance. PMID:27074515
Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses. PMID:27065316
Structural and functional annotation of the MADS-box transcription factor family in grapevine. PMID:26818751
Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus. PMID:26728038
Deciphering evolutionary strata on plant sex chromosomes and fungal mating-type chromosomes through compositional segmentation. PMID:26694866
Development of PCR-Based Markers to Determine the Sex of Kelps. PMID:26496392
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. PMID:26108467
microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. PMID:26101255
Isolation, characterization and PCR multiplexing of microsatellite loci for a mite crop pest, Tetranychus urticae (Acari: Tetranychidae). PMID:26081801
Inhibitory properties of cysteine protease pro-peptides from barley confer resistance to spider mite feeding. PMID:26039069
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. PMID:25494611
The grapevine gene nomenclature system. PMID:25481684
Insights into conifer giga-genomes. PMID:25349325
Evidence for the plasticity of arthropod signal transduction pathways. PMID:25213332
From plant genomes to protein families: computational tools. PMID:24688740
Uncovering the genetic basis for early isogamete differentiation: a case study of Ectocarpus siliculosus. PMID:24359479
MicroRNA156: a potential graft-transmissible microRNA that modulates plant architecture and tuberization in Solanum tuberosum ssp. andigena. PMID:24351688
The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution. PMID:24273312
Genome wide gene-expression analysis of facultative reproductive diapause in the two-spotted spider mite Tetranychus urticae. PMID:24261877
Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures. PMID:24022610
Web Apollo: a web-based genomic annotation editing platform. PMID:24000942
Structure/function analysis of a type iii polyketide synthase in the brown alga Ectocarpus siliculosus reveals a biochemical pathway in phlorotannin monomer biosynthesis. PMID:23983220
Tags:
Tags
More detailed information about this field from each metasource.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: ORCAE; Online Resource for Community Annotation of Eukaryotes; DOI: https://doi.org/10.25504/FAIRsharing.9btkvp; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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