Networks of Functional Coupling of proteins
Names
More detailed information about this field from each metasource.
Networks of Functional Coupling of proteins
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
FunCoup
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Networks of Functional Coupling of proteins
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
FunCoup
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Networks of Functional Coupling of proteins
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
FunCoup
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional coupling, or functional association, is an unspecific form of association that encompasses direct physical interaction but also more general types of direct or indirect interaction like regulatory interaction or participation the same process or pathway.
Description
More detailed information about this field from each metasource.
FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional coupling, or functional association, is an unspecific form of association that encompasses direct physical interaction but also more general types of direct or indirect interaction like regulatory interaction or participation the same process or pathway.
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
This release of the FunCoup database (http://funcoup.sbc.su.se) is the fourth generation of one of the most comprehensive databases for genome-wide functional association networks. These functional associations are inferred via integrating various data types using a naive Bayesian algorithm and orthology based information transfer across different species. This approach provides high coverage of the included genomes as well as high quality of inferred interactions. In this update of FunCoup we introduce four new eukaryotic species: Schizosaccharomyces pombe, Plasmodium falciparum, Bos taurus, Oryza sativa and open the database to the prokaryotic domain by including networks for Escherichia coli and Bacillus subtilis. The latter allows us to also introduce a new class of functional association between genes - co-occurrence in the same operon. We also supplemented the existing classes of functional association: metabolic, signaling, complex and physical protein interaction with up-to-date information. In this release we switched to InParanoid v8 as the source of orthology and base for calculation of phylogenetic profiles. While populating all other evidence types with new data we introduce a new evidence type based on quantitative mass spectrometry data. Finally, the new JavaScript based network viewer provides the user an intuitive and responsive platform to further evaluate the results.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://funcoup.sbc.su.se/Webpage
More detailed information about this field from each metasource.
http://funcoup.sbc.su.se/
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://funcoup.sbc.su.se
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
Global networks of functional coupling in eukaryotes from comprehensive data integration
PMID: 19246318
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
FunCoup 3.0: database of genome-wide functional coupling networks
PMID: 24185702
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Comparative interactomics with Funcoup 2.0
PMID: 22110034
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gkx1138
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Global networks of functional coupling in eukaryotes from comprehensive data integration
PMID: 19246318
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
FunCoup 3.0: database of genome-wide functional coupling networks
PMID: 24185702
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Comparative interactomics with Funcoup 2.0
PMID: 22110034
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gkx1138
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Global networks of functional coupling in eukaryotes from comprehensive data integration
PubMed citations: 87.
87 articles citing: Global networks of functional coupling in eukaryotes from comprehensive data integration
Potential and Therapeutic Roles of Diosmin in Human Diseases. PMID:35625813
Multi-staged gene expression profiling reveals potential genes and the critical pathways in kidney cancer. PMID:35508649
Global Gene Expression and Docking Profiling of COVID-19 Infection. PMID:35480316
Gene Expression Profiling of Early Acute Febrile Stage of Dengue Infection and Its Comparative Analysis With Streptococcus pneumoniae Infection. PMID:34778101
Drug repurposing improves disease targeting 11-fold and can be augmented by network module targeting, applied to COVID-19. PMID:34667255
Understanding the role of potential pathways and its components including hypoxia and immune system in case of oral cancer. PMID:34599215
In-Silico Study of Immune System Associated Genes in Case of Type-2 Diabetes With Insulin Action and Resistance, and/or Obesity. PMID:33927693
Quantitative analysis of global protein stability rates in tissues. PMID:32994440
Pathway-specific model estimation for improved pathway annotation by network crosstalk. PMID:32788619
Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis. PMID:31842970
Exosomes regulate neurogenesis and circuit assembly. PMID:31320591
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data. PMID:30787419
EviNet: a web platform for network enrichment analysis with flexible definition of gene sets. PMID:29893885
The Pathway Coexpression Network: Revealing pathway relationships. PMID:29554099
FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets. PMID:29504895
The integration of weighted gene association networks based on information entropy. PMID:29272314
FunCoup 4: new species, data, and visualization. PMID:29165593
A large-scale benchmark of gene prioritization methods. PMID:28429739
Extracellular Vesicles Mediate Radiation-Induced Systemic Bystander Signals in the Bone Marrow and Spleen. PMID:28396668
RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo. PMID:28174275
The integration of weighted human gene association networks based on link prediction. PMID:28137253
Utility and Limitations of Using Gene Expression Data to Identify Functional Associations. PMID:27935950
A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation. PMID:27664219
Phenotypic Modulation of Smooth Muscle Cells in Atherosclerosis Is Associated With Downregulation of LMOD1, SYNPO2, PDLIM7, PLN, and SYNM. PMID:27470516
A genome-wide IR-induced RAD51 foci RNAi screen identifies CDC73 involved in chromatin remodeling for DNA repair. PMID:27462432
OncoBinder facilitates interpretation of proteomic interaction data by capturing coactivation pairs in cancer. PMID:26872056
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis. PMID:26672765
Identification of Novel Epigenetic Markers of Prostate Cancer by NotI-Microarray Analysis. PMID:26491211
Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. PMID:26362267
CNV Analysis Associates AKNAD1 with Type-2 Diabetes in Jordan Subpopulations. PMID:26292654
Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth. PMID:26081588
Rare variants at 16p11.2 are associated with common variable immunodeficiency. PMID:25678086
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr. PMID:25419450
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. PMID:25316676
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis. PMID:25236784
Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions. PMID:24892934
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. PMID:24744987
Multiple small RNA pathways regulate the silencing of repeated and foreign genes in C. elegans. PMID:24352423
FunCoup 3.0: database of genome-wide functional coupling networks. PMID:24185702
Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1. PMID:23580547
Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans. PMID:23374645
Statistical assessment of crosstalk enrichment between gene groups in biological networks. PMID:23372799
Network analysis of functional genomics data: application to avian sex-biased gene expression. PMID:23319882
RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network. PMID:23268829
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines. PMID:23158748
Cross-species functional genomic analysis identifies resistance genes of the histone deacetylase inhibitor valproic acid. PMID:23155442
Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells. PMID:23144729
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks. PMID:22966941
A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression. PMID:22961449
A network-oriented perspective on cardiac calcium signaling. PMID:22843795
Comparative interactomics with Funcoup 2.0. PMID:22110034
Functional coupling analysis suggests link between the obesity gene FTO and the BDNF-NTRK2 signaling pathway. PMID:22087873
A network-based gene-weighting approach for pathway analysis. PMID:21894192
Muscle-specific gene expression is underscored by differential stressor responses and coexpression changes. PMID:21881922
Systems biology of kidney diseases. PMID:21881558
Large-scale de novo prediction of physical protein-protein association. PMID:21836163
Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function. PMID:21785136
ncFANs: a web server for functional annotation of long non-coding RNAs. PMID:21715382
Prioritizing candidate disease genes by network-based boosting of genome-wide association data. PMID:21536720
Gene ontology function prediction in mollicutes using protein-protein association networks. PMID:21486441
Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells. PMID:21447198
An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq. PMID:21358819
Genetic association of sequence variants near AGER/NOTCH4 and dementia. PMID:21297263
Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle. PMID:21226902
Gerontome: a web-based database server for aging-related genes and analysis pipelines. PMID:21143804
Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components. PMID:21124865
Integrative analysis of -omics data and histologic scoring in renal disease and transplantation: renal histogenomics. PMID:21044763
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. PMID:21036869
It's the machine that matters: Predicting gene function and phenotype from protein networks. PMID:20637909
Identifying differentially regulated subnetworks from phosphoproteomic data. PMID:20584295
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. PMID:20576703
Predicting genetic modifier loci using functional gene networks. PMID:20538624
A quick guide to large-scale genomic data mining. PMID:20523745
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity. PMID:20463971
Molecular signaling in zebrafish development and the vertebrate phylotypic period. PMID:20433455
A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways. PMID:20382984
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk. PMID:20167577
Global transcriptional response after exposure of fission yeast cells to ultraviolet light. PMID:20015352
Network-based Identification of novel cancer genes. PMID:19959820
Phylogeny-guided interaction mapping in seven eukaryotes. PMID:19948065
Knowledge-based data analysis comes of age. PMID:19854753
Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets. PMID:19779614
Rich can get poor: conversion of hub to non-hub proteins. PMID:19399641
The W, X, Y and Z of sex-chromosome dosage compensation. PMID:19359064 -
FunCoup 3.0: database of genome-wide functional coupling networks
PubMed citations: 65.
65 articles citing: FunCoup 3.0: database of genome-wide functional coupling networks
Individualized discovery of rare cancer drivers in global network context. PMID:35593700
Explore potential disease related metabolites based on latent factor model. PMID:35387615
Gene coexpression networks reveal molecular interactions underlying cichlid jaw modularity. PMID:33888061
Versatile knowledge guided network inference method for prioritizing key regulatory factors in multi-omics data. PMID:33762588
Integrated regulatory models for inference of subtype-specific susceptibilities in glioblastoma. PMID:32974985
Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms. PMID:32843692
WeiBI (web-based platform): Enriching integrated interaction network with increased coverage and functional proteins from genome-wide experimental OMICS data. PMID:32221380
Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder. PMID:32051402
Prioritizing candidate diseases-related metabolites based on literature and functional similarity. PMID:31760947
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases. PMID:31494632
A network-based pathway-extending approach using DNA methylation and gene expression data to identify altered pathways. PMID:31413306
Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks. PMID:31335894
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Disease gene prediction for molecularly uncharacterized diseases. PMID:31276496
Benchmarker: An Unbiased, Association-Data-Driven Strategy to Evaluate Gene Prioritization Algorithms. PMID:31056107
When pitch adds to volume: coregulation of transcript diversity predicts gene function. PMID:30545302
Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It. PMID:30085180
CDG: An Online Server for Detecting Biologically Closest Disease-Causing Genes and its Application to Primary Immunodeficiency. PMID:29997612
Determining the minimum number of protein-protein interactions required to support known protein complexes. PMID:29698482
FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets. PMID:29504895
Molecular targets and signaling pathways regulated by nuclear translocation of syndecan-1. PMID:29216821
Gene gravity-like algorithm for disease gene prediction based on phenotype-specific network. PMID:29212543
FunCoup 4: new species, data, and visualization. PMID:29165593
Upregulation of homeobox gene is correlated with poor survival outcomes in cervical cancer. PMID:29137433
Roles of sigma-1 receptors on mitochondrial functions relevant to neurodegenerative diseases. PMID:28917260
The Role of Sigma-1 Receptor, an Intracellular Chaperone in Neurodegenerative Diseases. PMID:28554311
Characterization of potential driver mutations involved in human breast cancer by computational approaches. PMID:28477017
A large-scale benchmark of gene prioritization methods. PMID:28429739
Extracellular Vesicles Mediate Radiation-Induced Systemic Bystander Signals in the Bone Marrow and Spleen. PMID:28396668
The integration of weighted human gene association networks based on link prediction. PMID:28137253
LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering. PMID:27993778
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. PMID:27924014
A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation. PMID:27664219
NEAT: an efficient network enrichment analysis test. PMID:27597310
Phenotypic Modulation of Smooth Muscle Cells in Atherosclerosis Is Associated With Downregulation of LMOD1, SYNPO2, PDLIM7, PLN, and SYNM. PMID:27470516
Circulating proteins in response to combined-modality therapy in rectal cancer identified by antibody array screening. PMID:27461255
PathwAX: a web server for network crosstalk based pathway annotation. PMID:27151197
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks. PMID:27131791
PIPINO: A Software Package to Facilitate the Identification of Protein-Protein Interactions from Affinity Purification Mass Spectrometry Data. PMID:26966684
Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia. PMID:26961822
Divergence in gene expression within and between two closely related flycatcher species. PMID:26928872
The Sigma-1 Receptor as a Pluripotent Modulator in Living Systems. PMID:26869505
Application of computational methods in genetic study of inflammatory bowel disease. PMID:26811639
Environmental Correlation Analysis for Genes Associated with Protection against Malaria. PMID:26744416
Did we learn something new on pemphigoid autoimmune blistering diseases? PMID:26612397
Linking Genes to Cardiovascular Diseases: Gene Action and Gene-Environment Interactions. PMID:26545598
MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates. PMID:26527726
Relevance Rank Platform (RRP) for Functional Filtering of High Content Protein-Protein Interaction Data. PMID:26499835
Mutation in CEP63 co-segregating with developmental dyslexia in a Swedish family. PMID:26400686
Applications of comparative evolution to human disease genetics. PMID:26338499
CNV Analysis Associates AKNAD1 with Type-2 Diabetes in Jordan Subpopulations. PMID:26292654
Computational analysis of protein interaction networks for infectious diseases. PMID:26261187
The eukaryotic translation initiation regulator CDC123 defines a divergent clade of ATP-grasp enzymes with a predicted role in novel protein modifications. PMID:25976611
IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks. PMID:25969450
FlyNet: a versatile network prioritization server for the Drosophila community. PMID:25943544
FNTM: a server for predicting functional networks of tissues in mouse. PMID:25940632
Rare variants at 16p11.2 are associated with common variable immunodeficiency. PMID:25678086
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329
InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic. PMID:25429972
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. PMID:25392420
STRING v10: protein-protein interaction networks, integrated over the tree of life. PMID:25352553
Systematic transcriptome analysis of the zebrafish model of diamond-blackfan anemia induced by RPS24 deficiency. PMID:25189322
HOX genes and their role in the development of human cancers. PMID:24996520
Functional association networks as priors for gene regulatory network inference. PMID:24931976
A highly conserved family of domains related to the DNA-glycosylase fold helps predict multiple novel pathways for RNA modifications. PMID:24646681 -
Comparative interactomics with Funcoup 2.0
PubMed citations: 34.
34 articles citing: Comparative interactomics with Funcoup 2.0
Network Crosstalk as a Basis for Drug Repurposing. PMID:35350247
Androgens increase excitatory neurogenic potential in human brain organoids. PMID:35046577
Enzymes in the Cholesterol Synthesis Pathway: Interactomics in the Cancer Context. PMID:34440098
Quantitative analysis of global protein stability rates in tissues. PMID:32994440
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data. PMID:30787419
CDG: An Online Server for Detecting Biologically Closest Disease-Causing Genes and its Application to Primary Immunodeficiency. PMID:29997612
FunCoup 4: new species, data, and visualization. PMID:29165593
A large-scale benchmark of gene prioritization methods. PMID:28429739
A genome-wide IR-induced RAD51 foci RNAi screen identifies CDC73 involved in chromatin remodeling for DNA repair. PMID:27462432
PathwAX: a web server for network crosstalk based pathway annotation. PMID:27151197
LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights. PMID:26750448
Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge. PMID:26322129
Prediction of Metabolic Gene Biomarkers for Neurodegenerative Disease by an Integrated Network-Based Approach. PMID:26064912
Grouping annotations on the subcellular layered interactome demonstrates enhanced autophagy activity in a recurrent experimental autoimmune uveitis T cell line. PMID:25116327
Key genes associated with osteoporosis revealed by genome wide gene expression analysis. PMID:24993113
Expression of transcribed ultraconserved regions of genome in rat cerebral cortex. PMID:24953281
Functional association networks as priors for gene regulatory network inference. PMID:24931976
Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions. PMID:24892934
Protein-protein interactions and genetic diseases: The interactome. PMID:24892209
Genome-wide association study in obsessive-compulsive disorder: results from the OCGAS. PMID:24821223
HGCS: an online tool for prioritizing disease-causing gene variants by biological distance. PMID:24694260
A highly conserved family of domains related to the DNA-glycosylase fold helps predict multiple novel pathways for RNA modifications. PMID:24646681
FunCoup 3.0: database of genome-wide functional coupling networks. PMID:24185702
Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers. PMID:23925789
GeneMANIA prediction server 2013 update. PMID:23794635
Autoantibody profiling in multiple sclerosis using arrays of human protein fragments. PMID:23732997
The human gene connectome as a map of short cuts for morbid allele discovery. PMID:23509278
Network analysis of functional genomics data: application to avian sex-biased gene expression. PMID:23319882
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Novel transglutaminase-like peptidase and C2 domains elucidate the structure, biogenesis and evolution of the ciliary compartment. PMID:22983010
Genes2FANs: connecting genes through functional association networks. PMID:22748121
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks. PMID:22684505
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit. PMID:22669910 - http://dx.doi.org/10.1093/nar/gkx1138
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
functional association
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genetic interaction
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
biological regulation
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
functional association
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genetic interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: FunCoup; Networks of Functional Coupling of proteins; DOI: https://doi.org/10.25504/FAIRsharing.qbwrtn; Last edited: July 7, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
biological regulation functional association genetic interaction genome molecular interaction protein protein interaction metabolic and signaling pathways
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