Automatic molecular interaction predictions
Names
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Automatic molecular interaction predictions
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
InteroPorc
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Automatic molecular interaction predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
InteroPorc
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Automatic molecular interaction predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
InteroPorc
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8.
Description
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InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8.
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://biodev.extra.cea.fr/interoporc/Webpage
More detailed information about this field from each metasource.
http://biodev.extra.cea.fr/interoporc/
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
InteroPORC: automated inference of highly conserved protein interaction networks
PMID: 18508856
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
InteroPORC: automated inference of highly conserved protein interaction networks
PMID: 18508856
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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InteroPORC: automated inference of highly conserved protein interaction networks
PubMed citations: 19.
19 articles citing: InteroPORC: automated inference of highly conserved protein interaction networks
Computational Network Inference for Bacterial Interactomics. PMID:35353009
Determinants of correlated expression of transcription factors and their target genes. PMID:33104784
From Cyanobacteria to Human, MAPEG-Type Glutathione-S-Transferases Operate in Cell Tolerance to Heat, Cold, and Lipid Peroxidation. PMID:31681188
Determining the minimum number of protein-protein interactions required to support known protein complexes. PMID:29698482
Using structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis. PMID:28376709
Genome-wide protein-protein interactions and protein function exploration in cyanobacteria. PMID:26490033
Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs. PMID:25887594
Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria. PMID:25071821
ppiPre: predicting protein-protein interactions by combining heterogeneous features. PMID:24565177
Complementing the Eukaryotic Protein Interactome. PMID:23825550
Dissecting the gene network of dietary restriction to identify evolutionarily conserved pathways and new functional genes. PMID:22912585
Integrated inference and analysis of regulatory networks from multi-level measurements. PMID:22482944
ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis. PMID:22345505
Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping. PMID:21767381
Reactome pathway analysis to enrich biological discovery in proteomics data sets. PMID:21751369
Discovering conditional co-regulated protein complexes by integrating diverse data sources. PMID:20840731
Building and analyzing protein interactome networks by cross-species comparisons. PMID:20353594
Phylogeny-guided interaction mapping in seven eukaryotes. PMID:19948065
The IntAct molecular interaction database in 2010. PMID:19850723
Tags:
Tags
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computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: InteroPorc; Automatic molecular interaction predictions; DOI: https://doi.org/10.25504/FAIRsharing.3hrbfr; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
computational predictions network model orthology protein protein interaction
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