R3Z375 last accessed: 2022-11-04

Other names: jPOSTrepo, Japan ProteOme STandard Repository/Database

jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.

Webpage:

https://repository.jpostdb.org/

Licence:

Name: Creative Commons Attribution 4.0 International (CC BY 4.0)
URL: https://creativecommons.org/licenses/by/4.0/

Publications:

Publications
More detailed information about this field from each metasource.

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
PMID: 27924013
metasource: Fairsharing.org
version: FAIRsharing.org: jPOSTrepo; Japan Proteome Standard Repository; DOI: https://doi.org/10.25504/FAIRsharing.p899f7; Last edited: Jan. 8, 2019, 1:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

jPOSTrepo: an international standard data repository for proteomes
PMID: 27899654
metasource: Fairsharing.org
version: FAIRsharing.org: jPOSTrepo; Japan Proteome Standard Repository; DOI: https://doi.org/10.25504/FAIRsharing.p899f7; Last edited: Jan. 8, 2019, 1:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

http://dx.doi.org/10.1093/nar/1987
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition PubMed citations: 395.

395 articles citing: The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

Mass Spectrometry Imaging Spatial Tissue Analysis toward Personalized Medicine. PMID:35888125
Multiple Myeloma-Derived Extracellular Vesicles Modulate the Bone Marrow Immune Microenvironment. PMID:35874665
Proteomic analysis of low- and high-grade human colon adenocarcinoma tissues and tissue-derived primary cell lines reveals unique biological functions of tumours and new protein biomarker candidates. PMID:35842572
Patient-Derived Extracellular Vesicles Proteins as New Biomarkers in Multiple Myeloma - A Real-World Study. PMID:35800053
HSP90 and Aha1 modulate microRNA maturation through promoting the folding of Dicer1. PMID:35736213
Regulatory Modules of Metabolites and Protein Phosphorylation in Arabidopsis Genotypes With Altered Sucrose Allocation. PMID:35665154
Novel Bioinformatics Strategies Driving Dynamic Metaproteomic Studies. PMID:35612752
Activated SUMOylation restricts MHC class I antigen presentation to confer immune evasion in cancer. PMID:35499080
Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss. PMID:35396510
Proteomics and phosphoproteomics datasets of a muscle-specific STIM1 loss-of-function mouse model. PMID:35345842
Protein Expression of AEBP1, MCM4, and FABP4 Differentiate Osteogenic, Adipogenic, and Mesenchymal Stromal Stem Cells. PMID:35269711
SP3-Enabled Rapid and High Coverage Chemoproteomic Identification of Cell-State-Dependent Redox-Sensitive Cysteines. PMID:35219905
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Novel feature selection method via kernel tensor decomposition for improved multi-omics data analysis. PMID:35209912
Characterization of Glycoproteoforms of Integrins α2 and β1 in Megakaryocytes in the Occurrence of JAK2V617F Mutation-Induced Primary Myelofibrosis. PMID:35182768
Multi-omics reveals mitochondrial metabolism proteins susceptible for drug discovery in AML. PMID:35177813
Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces. PMID:35106611
Vps501, a novel vacuolar SNX-BAR protein cooperates with the SEA complex to regulate TORC1 signaling. PMID:35098628
Comparative Metabolomics and Proteomics Reveal Vibrio parahaemolyticus Targets Hypoxia-Related Signaling Pathways of Takifugu obscurus. PMID:35095928
Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria. PMID:35074914
Interventional- and amputation-stage muscle proteomes in the chronically threatened ischemic limb. PMID:35073463
Three Microbial Musketeers of the Seas: Shewanella baltica, Aliivibrio fischeri and Vibrio harveyi, and Their Adaptation to Different Salinity Probed by a Proteomic Approach. PMID:35054801
Comment on: The m6A Reader IGF2BP2 Regulates Macrophage Phenotypic Activation and Inflammatory Diseases by Stabilizing TSC1 and PPARγ. PMID:35038236
Nicotinamide riboside supplementation confers marginal metabolic benefits in obese mice without remodeling the muscle acetyl-proteome. PMID:35028529
Current status of PTMs structural databases: applications, limitations and prospects. PMID:35020020
Altered succinylation of mitochondrial proteins, APP and tau in Alzheimer's disease. PMID:35013160
Absence of COVID-19-associated changes in plasma coagulation proteins and pulmonary thrombosis in the ferret model. PMID:34954402
Targeting CAMKK2 and SOC Channels as a Novel Therapeutic Approach for Sensitizing Acute Promyelocytic Leukemia Cells to All-Trans Retinoic Acid. PMID:34943872
APC7 mediates ubiquitin signaling in constitutive heterochromatin in the developing mammalian brain. PMID:34942119
Identification of α1,2-fucosylated signaling and adhesion molecules in head and neck squamous cell carcinoma. PMID:34939118
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline. PMID:34919405
A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction. PMID:34891158
Alterations in sphingolipid composition and mitochondrial bioenergetics represent synergistic therapeutic vulnerabilities linked to multidrug resistance in leukemia. PMID:34888943
New system for archiving integrative structures. PMID:34866606
ProteoDisco: A flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies. PMID:34864882
Biochemical Characterisation of Human Transglutaminase 4. PMID:34830327
Deciphering the major metabolic pathways associated with aluminum tolerance in popcorn roots using label-free quantitative proteomics. PMID:34821986
DeepPhospho accelerates DIA phosphoproteome profiling through in silico library generation. PMID:34795227
A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization. PMID:34782742
Genomic expansion of Aldh1a1 protects beavers against high metabolic aldehydes from lipid oxidation. PMID:34758328
Eukaryotic initiation factor 2 signaling behind neural invasion linked with lymphatic and vascular invasion in pancreatic cancer. PMID:34707166
Molecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffolds. PMID:34707135
PLCG1 is required for AML1-ETO leukemia stem cell self-renewal. PMID:34695195
Characterization of the Human Eccrine Sweat Proteome-A Focus on the Biological Variability of Individual Sweat Protein Profiles. PMID:34639210
A Linkage-specific Sialic Acid Labeling Strategy Reveals Different Site-specific Glycosylation Patterns in SARS-CoV-2 Spike Protein Produced in CHO and HEK Cell Substrates. PMID:34631661
Metabolomic and proteomic characterization of sng and pain phenotypes in fibromyalgia. PMID:34608709
Phospholipase Cγ2 regulates endocannabinoid and eicosanoid networks in innate immune cells. PMID:34607960
Approaching In Vivo Models of Pneumococcus-Host Interaction: Insights into Surface Proteins, Capsule Production, and Extracellular Vesicles. PMID:34578131
Building Personalized Cancer Therapeutics through Multi-Omics Assays and Bacteriophage-Eukaryotic Cell Interactions. PMID:34575870
Intra-Tumor Heterogeneity Revealed by Mass Spectrometry Imaging Is Associated with the Prognosis of Breast Cancer. PMID:34503159
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics. PMID:34468196
Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars. PMID:34439883
'Candidatus Liberibacter asiaticus' Multimeric LotP Mediates Citrus sinensis Defense Response Activation. PMID:34421834
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. PMID:34411258
Survival analysis in breast cancer using proteomic data from four independent datasets. PMID:34408238
Decoding disease: from genomes to networks to phenotypes. PMID:34341555
The clinical importance of tandem exon duplication-derived substitutions. PMID:34302486
Compatibility of Distinct Label-Free Proteomic Workflows in Absolute Quantification of Proteins Linked to the Oocyte Quality in Human Follicular Fluid. PMID:34299044
Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues. PMID:34257588
Antagonism of the mu-delta opioid receptor heterodimer enhances opioid antinociception by activating Src and calcium/calmodulin-dependent protein kinase II signaling. PMID:34252907
A ciliopathy complex builds distal appendages to initiate ciliogenesis. PMID:34241634
ATR regulates neuronal activity by modulating presynaptic firing. PMID:34210973
Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models. PMID:34205912
Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations. PMID:34204565
Universal Spectrum Identifier for mass spectra. PMID:34183830
Surface-Shaving Proteomics of Mycobacterium marinum Identifies Biofilm Subtype-Specific Changes Affecting Virulence, Tolerance, and Persistence. PMID:34156290
Evidence for nutrient-dependent regulation of the COPII coat by O-GlcNAcylation. PMID:34142147
Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves. PMID:34138952
Intrinsic OXPHOS limitations underlie cellular bioenergetics in leukemia. PMID:34132194
Development of an inexpensive matrix-assisted laser desorption-time of flight mass spectrometry method for the identification of endophytes and rhizobacteria cultured from the microbiome associated with maize. PMID:34123583
Proteomics-Based Insights Into the SARS-CoV-2-Mediated COVID-19 Pandemic: A Review of the First Year of Research. PMID:34089862
Clinical Assay for the Early Detection of Colorectal Cancer Using Mass Spectrometric Wheat Germ Agglutinin Multiple Reaction Monitoring. PMID:34063271
Large-scale identification of protein histidine methylation in human cells. PMID:34046594
Assessing the functional relevance of splice isoforms. PMID:34046593
ARP-T1-associated Bazex-Dupré-Christol syndrome is an inherited basal cell cancer with ciliary defects characteristic of ciliopathies. PMID:33972689
Modulated Electro-Hyperthermia Induces a Prominent Local Stress Response and Growth Inhibition in Mouse Breast Cancer Isografts. PMID:33917524
Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status. PMID:33917179
G-Protein-coupled Estrogen Receptor 1 Agonist G-1 Perturbs Sunitinib Resistance-related Phosphoproteomic Signatures in Renal Cell Carcinoma. PMID:33893075
Chaperone-mediated autophagy prevents collapse of the neuronal metastable proteome. PMID:33891876
TPL-2 kinase induces phagosome acidification to promote macrophage killing of bacteria. PMID:33881780
GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis. PMID:33854526
Proteomics characterisation of the L929 cell supernatant and its role in BMDM differentiation. PMID:33853969
BET inhibition blocks inflammation-induced cardiac dysfunction and SARS-CoV-2 infection. PMID:33811809
INPP5K and SIL1 associated pathologies with overlapping clinical phenotypes converge through dysregulation of PHGDH. PMID:33792664
Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product. PMID:33758337
Cardiovascular informatics: building a bridge to data harmony. PMID:33751044
Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing's sarcoma cells. PMID:33743824
Global analysis of lysine 2-hydroxyisobutyrylation in wheat root. PMID:33737719
The SARS-CoV-2 subgenome landscape and its novel regulatory features. PMID:33713597
Oryza sativa cv. Nipponbare and Oryza barthii as Unexpected Tolerance and Susceptibility Sources Against Schizotetranychus oryzae (Acari: Tetranychidae) Mite Infestation. PMID:33643348
Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells. PMID:33590792
A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions. PMID:33563827
The canine activated platelet secretome (CAPS): A translational model of thrombin-evoked platelet activation response. PMID:33537530
Chronic caloric restriction maintains a youthful phosphoproteome in aged skeletal muscle. PMID:33529682
SUMOylation regulates the protein network and chromatin accessibility at glucocorticoid receptor-binding sites. PMID:33524141
Isolation and characterization of extracellular vesicle subpopulations from tissues. PMID:33495626
SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. PMID:33442901
Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase. PMID:33419956
Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. PMID:33397462
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine. PMID:33332123
Single Mutation in the NFU1 Gene Metabolically Reprograms Pulmonary Artery Smooth Muscle Cells. PMID:33297749
Comparative Proteomic Analysis of Walnut (Juglans regia L.) Pellicle Tissues Reveals the Regulation of Nut Quality Attributes. PMID:33261033
Profiling the Murine SUMO Proteome in Response to Cardiac Ischemia and Reperfusion Injury. PMID:33260959
Top-Down Proteomics of Endogenous Membrane Proteins Enabled by Cloud Point Enrichment and Multidimensional Liquid Chromatography-Mass Spectrometry. PMID:33231430
The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase. PMID:33225887
Abundance of metalloprotease FtsH12 modulates chloroplast development in Arabidopsis thaliana. PMID:33216923
Analysis of complement deposition and processing on Chlamydia trachomatis. PMID:33206237
Development and Comparative Evaluation of Endolysosomal Proximity Labeling-Based Proteomic Methods in Human iPSC-Derived Neurons. PMID:33201688
Sirtuin 5 Is Regulated by the SCFCyclin F Ubiquitin Ligase and Is Involved in Cell Cycle Control. PMID:33168699
The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis. PMID:33166396
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. PMID:33166149
Molecular Surgery: Proteomics of a Rare Genetic Disease Gives Insight into Common Causes of Blindness. PMID:33134897
The Dynamic Proteome of Oligodendrocyte Lineage Differentiation Features Planar Cell Polarity and Macroautophagy Pathways. PMID:33128372
Characteristics of the Protein Complexes and Pores Formed by Bacillus cereus Hemolysin BL. PMID:33114414
Novel approach to quantify mitochondrial content and intrinsic bioenergetic efficiency across organs. PMID:33077793
OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. PMID:33067342
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. PMID:33053376
MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks. PMID:33028193
Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco. PMID:33020657
An analysis of tissue-specific alternative splicing at the protein level. PMID:33017396
Viral Perturbation of Alternative Splicing of a Host Transcript Benefits Infection. PMID:32958561
Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism. PMID:32935914
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. PMID:32929271
Peptide-Spectrum Match Validation with Internal Standards (P-VIS): Internally-Controlled Validation of Mass Spectrometry-Based Peptide Identifications. PMID:32924495
Some like it hot: population-specific adaptations in venom production to abiotic stressors in a widely distributed cnidarian. PMID:32907568
Technical report: Targeted proteomic analysis reveals enrichment of atypical ubiquitin chains in contractile murine tissues. PMID:32898700
Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters. PMID:32894293
Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome. PMID:32878984
Lowering Sample Requirements to Study Tyrosine Kinase Signaling Using Phosphoproteomics with the TMT Calibrator Approach. PMID:32865326
Pseudomonas aeruginosa Presents Multiple Vital Changes in Its Proteome in the Presence of 3-Hydroxyphenylacetic Acid, a Promising Antimicrobial Agent. PMID:32832748
Cell density-dependent proteolysis by HtrA1 induces translocation of zyxin to the nucleus and increased cell survival. PMID:32826880
NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. PMID:32766723
Time-Dependent miRNA Profile during Septic Acute Kidney Injury in Mice. PMID:32727087
Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis. PMID:32726313
Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment. PMID:32723793
Piggybacking on Classical Import and Other Non-Classical Mechanisms of Nuclear Import Appear Highly Prevalent within the Human Proteome. PMID:32718019
A comparison of proteomic, genomic, and osteological methods of archaeological sex estimation. PMID:32681049
Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure. PMID:32660330
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein. PMID:32646969
The liver matrisome - looking beyond collagens. PMID:32637906
Dual lysine and N-terminal acetyltransferases reveal the complexity underpinning protein acetylation. PMID:32633465
Architecture and functional dynamics of the pentafunctional AROM complex. PMID:32632294
RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. PMID:32609809
N-glycomic profiling of colorectal cancer according to tumor stage and location. PMID:32598367
Absence of miRNA-146a Differentially Alters Microglia Function and Proteome. PMID:32582192
The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. PMID:32561711
Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. PMID:32555463
Shotgun proteomics reveals putative polyesterases in the secretome of the rock-inhabiting fungus Knufia chersonesos. PMID:32555357
Kir2.1 Interactome Mapping Uncovers PKP4 as a Modulator of the Kir2.1-Regulated Inward Rectifier Potassium Currents. PMID:32541000
The Progression of Acute Myeloid Leukemia from First Diagnosis to Chemoresistant Relapse: A Comparison of Proteomic and Phosphoproteomic Profiles. PMID:32512867
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. PMID:32511329
Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer. PMID:32489334
The protein kinase PknB negatively regulates biosynthesis and trafficking of mycolic acids in mycobacteria. PMID:32487543
Plasma protein expression differs between colorectal cancer patients depending on primary tumor location. PMID:32452655
Proteome Cold-Shock Response in the Extremely Acidophilic Archaeon, Cuniculiplasma divulgatum. PMID:32438588
TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7-9. PMID:32433612
Relative and Quantitative Phosphoproteome Analysis of Macrophages in Response to Infection by Virulent and Avirulent Mycobacteria Reveals a Distinct Role of the Cytosolic RNA Sensor RIG-I in Mycobacterium tuberculosis Pathogenesis. PMID:32407090
Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene. PMID:32398368
Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP. PMID:32380061
Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. PMID:32363014
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. PMID:32353859
Flow-induced Reorganization of Laminin-integrin Networks Within the Endothelial Basement Membrane Uncovered by Proteomics. PMID:32332107
A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells. PMID:32321993
Hemocyte phagosomal proteome is dynamically shaped by cytoskeleton remodeling and interorganellar communication with endoplasmic reticulum during phagocytosis in a marine invertebrate, Crassostrea gigas. PMID:32313134
Structure-function analyses of the G729R 2-oxoadipate dehydrogenase genetic variant associated with a disorder of l-lysine metabolism. PMID:32303640
Preoperative Radiotherapy Leads to Significant Differences in the Plasma Protein Profile of Rectal Cancer Patients. PMID:32294655
Primary Metabolism Is Distinctly Modulated by Plant Resistance Inducers in Coffea arabica Leaves Infected by Hemileia vastatrix. PMID:32265962
Response of Midgut Trypsin- and Chymotrypsin-Like Proteases of Helicoverpa armigera Larvae Upon Feeding With Peanut BBI: Biochemical and Biophysical Characterization of PnBBI. PMID:32265951
Unbiased Proteomic Approach Identifies Pathobiological Profiles in the Brains of Preclinical Models of Repetitive Mild Traumatic Brain Injury, Tauopathy, and Amyloidosis. PMID:32241177
Proteome Analysis in a Mammalian Cell line Reveals that PLK2 is Involved in Avian Metapneumovirus Type C (aMPV/C)-Induced Apoptosis. PMID:32231136
β-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma. PMID:32203567
Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum. PMID:32198399
Photoprotective Acclimation of the Arabidopsis thaliana Leaf Proteome to Fluctuating Light. PMID:32194630
Membrane Modulation of Super-Secreting "midiBacillus" Expressing the Major Staphylococcus aureus Antigen - A Mass-Spectrometry-Based Absolute Quantification Approach. PMID:32185169
Polycysteine-encoding leaderless short ORFs function as cysteine-responsive attenuators of operonic gene expression in mycobacteria. PMID:32181921
Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles. PMID:32167280
Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. PMID:32144273
Automated sample preparation with SP3 for low-input clinical proteomics. PMID:32129943
Plasmodium chaperonin TRiC/CCT identified as a target of the antihistamine clemastine using parallel chemoproteomic strategy. PMID:32127489
Cyclosporine A inhibits MRTF-SRF signaling through Na+/K+ ATPase inhibition and actin remodeling. PMID:32123851
Identification of several plasma proteins whose levels in colorectal cancer patients differ depending on outcome. PMID:32123817
Subcellular proteomics combined with bioenergetic phenotyping reveals protein biomarkers of respiratory insufficiency in the setting of proofreading-deficient mitochondrial polymerase. PMID:32107436
β2-Adrenergic Signalling Promotes Cell Migration by Upregulating Expression of the Metastasis-Associated Molecule LYPD3. PMID:32098331
Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non-apoptotic cell death. PMID:32095117
Quantitative proteomics analysis reveals important roles of N-glycosylation on ER quality control system for development and pathogenesis in Magnaporthe oryzae. PMID:32092131
Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity. PMID:32074628
hipBA toxin-antitoxin systems mediate persistence in Caulobacter crescentus. PMID:32071324
Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features. PMID:32071085
Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa. PMID:32070416
Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. PMID:32059766
Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. PMID:32058723
Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia. PMID:32040259
Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7s. PMID:32024857
Inverse Data-Driven Modeling and Multiomics Analysis Reveals Phgdh as a Metabolic Checkpoint of Macrophage Polarization and Proliferation. PMID:32023468
Comparative proteomic analysis reveals that exogenous 6-benzyladenine (6-BA) improves the defense system activity of waterlogged summer maize. PMID:31996151
Metabolic syndrome diminishes insulin-induced Akt activation and causes a redistribution of Akt-interacting proteins in cardiomyocytes. PMID:31995605
Combined proteomics/miRNomics of dendritic cell immunotherapy-treated glioblastoma patients as a screening for survival-associated factors. PMID:31969991
Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics. PMID:31969708
Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages. PMID:31951200
Gigaxonin glycosylation regulates intermediate filament turnover and may impact giant axonal neuropathy etiology or treatment. PMID:31944090
Growth Mode and Physiological State of Cells Prior to Biofilm Formation Affect Immune Evasion and Persistence of Staphylococcus aureus. PMID:31940921
Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease. PMID:31930742
The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice. PMID:31892161
A Similar Secretome Disturbance as a Hallmark of Non-pathogenic Botrytis cinerea ATMT-Mutants? PMID:31866989
Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress. PMID:31852494
The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae). PMID:31847368
Proteomics: a powerful tool to study plant responses to biotic stress. PMID:31832077
Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome. PMID:31825849
The deubiquitinase USP7 stabilizes Maf proteins to promote myeloma cell survival. PMID:31822558
Global analysis of lysine succinylation in patchouli plant leaves. PMID:31814986
Cardioinformatics: the nexus of bioinformatics and precision cardiology. PMID:31802103
The Disulfide Stress Response and Protein S-thioallylation Caused by Allicin and Diallyl Polysulfanes in Bacillus subtilis as Revealed by Transcriptomics and Proteomics. PMID:31795512
Programmed DNA elimination of germline development genes in songbirds. PMID:31784533
Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET. PMID:31784520
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage. PMID:31771979
JASPer controls interphase histone H3S10 phosphorylation by chromosomal kinase JIL-1 in Drosophila. PMID:31767855
Serum extracellular vesicles contain SPARC and LRG1 as biomarkers of colon cancer and differ by tumour primary location. PMID:31753726
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. PMID:31744855
TMX2 Is a Crucial Regulator of Cellular Redox State, and Its Dysfunction Causes Severe Brain Developmental Abnormalities. PMID:31735293
Assessing Protein Sequence Database Suitability Using De Novo Sequencing. PMID:31732549
Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS). PMID:31721811
Tau interactome analyses in CRISPR-Cas9 engineered neuronal cells reveal ATPase-dependent binding of wild-type but not P301L Tau to non-muscle myosins. PMID:31700063
yRACK1/Asc1 proxiOMICs-Towards Illuminating Ships Passing in the Night. PMID:31689955
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Loss of FBXO9 Enhances Proteasome Activity and Promotes Aggressiveness in Acute Myeloid Leukemia. PMID:31684170
Integrative proteomic and phosphoproteomic profiling of prostate cell lines. PMID:31675377
Dataset of Nematostella vectensis Hsp70 isoform interactomes upon heat shock. PMID:31673583
Ageing and amyloidosis underlie the molecular and pathological alterations of tau in a mouse model of familial Alzheimer's disease. PMID:31673052
Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets. PMID:31667223
MaGenDB: a functional genomics hub for Malvaceae plants. PMID:31665439
An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21. PMID:31653714
Arsenic Response of Three Altiplanic Exiguobacterium Strains With Different Tolerance Levels Against the Metalloid Species: A Proteomics Study. PMID:31611848
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. PMID:31599596
MatrisomeDB: the ECM-protein knowledge database. PMID:31586405
Artificial fingerprints for cross-comparison of forensic DNA and protein recovery methods. PMID:31581206
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. PMID:31573204
Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells. PMID:31562326
2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample. PMID:31556620
Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome. PMID:31546776
Liver proteome dataset of Sparus aurata exposed to low temperatures. PMID:31528672
Nuclear control of lung cancer cells migration, invasion and bioenergetics by eukaryotic translation initiation factor 3F. PMID:31527668
Recurrent GNAQ mutation encoding T96S in natural killer/T cell lymphoma. PMID:31527657
The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei. PMID:31527615
Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft. PMID:31520135
Chemical Derivatization of Affinity Matrices Provides Protection from Tryptic Proteolysis. PMID:31498634
Conservation and divergence of protein pathways in the vertebrate heart. PMID:31490923
Interrogation of a live-attenuated enterotoxigenic Escherichia coli vaccine highlights features unique to wild-type infection. PMID:31482013
Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency. PMID:31481099
Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples. PMID:31471496
SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers. PMID:31454892
Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. PMID:31448616
The Effects of Sindbis Viral Vectors on Neuronal Function. PMID:31440143
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. PMID:31430157
Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP. PMID:31418899
A Novel Pyrazolopyrimidine Ligand of Human PGK1 and Stress Sensor DJ1 Modulates the Shelterin Complex and Telomere Length Regulation. PMID:31401411
Quantifying the impact of public omics data. PMID:31383865
Resistance in marine cyanobacteria differs against specialist and generalist cyanophages. PMID:31383764
Defining Protein Pattern Differences Among Molecular Subtypes of Diffuse Gliomas Using Mass Spectrometry. PMID:31353322
Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. PMID:31333693
N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PMID:31329577
Matrix metalloproteinases inactivate the proinflammatory functions of secreted moonlighting tryptophanyl-tRNA synthetase. PMID:31324718
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
Antagonistic Interactions between Benzo[a]pyrene and Fullerene (C60) in Toxicological Response of Marine Mussels. PMID:31288459
Reproducibility and Transparency by Design. PMID:31273047
C/EBPβ-LIP induces cancer-type metabolic reprogramming by regulating the let-7/LIN28B circuit in mice. PMID:31240246
Dynamic remodeling of the interactomes of Nematostella vectensis Hsp70 isoforms under heat shock. PMID:31233900
Proteomic analysis of urinary extracellular vesicles reveal biomarkers for neurologic disease. PMID:31229437
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages. PMID:31208443
Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia). PMID:31203412
Abundance of bacterial Type VI secretion system components measured by targeted proteomics. PMID:31197144
Detailed Soluble Proteome Analyses of a Dairy-Isolated Enterococcus faecalis: A Possible Approach to Assess Food Safety and Potential Probiotic Value. PMID:31157229
MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis. PMID:31130358
Cadmium tolerance pathway in Anopheles gambiae senso stricto. PMID:31121147
Proteomic insight into the pathogenesis of CAPN5-vitreoretinopathy. PMID:31110225
Sum of peak intensities outperforms peak area integration in iTRAQ protein expression measurement by LC-MS/MS using a TripleTOF 5600+ platform. PMID:31110078
Murine obscurin and Obsl1 have functionally redundant roles in sarcolemmal integrity, sarcoplasmic reticulum organization, and muscle metabolism. PMID:31098411
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency. PMID:31078527
Proteomic analysis of meningiomas reveals clinically distinct molecular patterns. PMID:31077268
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii. PMID:31071195
Comparison of Proteome Composition of Serum Enriched in Extracellular Vesicles Isolated from Polycythemia Vera Patients and Healthy Controls. PMID:31064135
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. PMID:31045356
Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer's disease. PMID:31019427
Proximity biotinylation identifies a set of conformation-specific interactions between Merlin and cell junction proteins. PMID:31015291
Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.). PMID:30991947
Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets. PMID:30977292
Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia. PMID:30944321
Ubiquitin C-terminal hydrolase L1 (UCH-L1) loss causes neurodegeneration by altering protein turnover in the first postnatal weeks. PMID:30923110
A post-translational modification of human Norovirus capsid protein attenuates glycan binding. PMID:30899001
Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. PMID:30884231
Human chorionic gonadotrophin pharmaceutical formulations of urinary origin display high levels of contaminant proteins-A label-free quantitation proteomics study. PMID:30883802
Heterogeneous clinical phenotypes and cerebral malformations reflected by rotatin cellular dynamics. PMID:30879067
Integrated multi-omics approach reveals a role of ALDH1A1 in lipid metabolism in human colon cancer cells. PMID:30851239
A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP-1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation. PMID:30848916
Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis sp. PCC 6803. PMID:30847494
Global analysis of methionine oxidation provides a census of folding stabilities for the human proteome. PMID:30846556
Differential miRNA expression profile and proteome in plasma exosomes from patients with paroxysmal nocturnal hemoglobinuria. PMID:30837665
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation. PMID:30822303
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. PMID:30799147
A mechanism for temporary bioadhesion. PMID:30782790
Identification of dysregulation of atrial proteins in rats with chronic obstructive apnea using two-dimensional polyacrylamide gel electrophoresis and mass spectrometry. PMID:30756508
Mass spectrometry data from identification of host-defense related proteins using label-free quantitative proteomic analysis of milk whey from cows with Staphylococcus aureus subclinical mastitis. PMID:30733978
Respiratory Phenomics across Multiple Models of Protein Hyperacylation in Cardiac Mitochondria Reveals a Marginal Impact on Bioenergetics. PMID:30726738
Annotation of gene product function from high-throughput studies using the Gene Ontology. PMID:30715275
Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma. PMID:30696890
Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles. PMID:30659065
Peptidome profiling dataset of ovarian cancer and non-cancer proximal fluids: Ascites and blood sera. PMID:30627607
Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1. PMID:30619200
Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry. PMID:30585061
Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii. PMID:30546371
Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation. PMID:30530755
Clinical potential of mass spectrometry-based proteogenomics. PMID:30487530
Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish. PMID:30457989
PPARγ maintains the metabolic heterogeneity and homeostasis of renal tubules. PMID:30420298
Trypanosomes can initiate nuclear export co-transcriptionally. PMID:30418648
Single Amino Acid Variant Discovery in Small Numbers of Cells. PMID:30404448
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
Proteomics based analysis of the nicotine catabolism in Paenarthrobacter nicotinovorans pAO1. PMID:30390017
Reciprocal inhibition of YAP/TAZ and NF-κB regulates osteoarthritic cartilage degradation. PMID:30385786
Glycerol supports growth of the Trypanosoma brucei bloodstream forms in the absence of glucose: Analysis of metabolic adaptations on glycerol-rich conditions. PMID:30383867
Aspartyl Protease 5 Matures Dense Granule Proteins That Reside at the Host-Parasite Interface in Toxoplasma gondii. PMID:30377279
Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and noncoding RNA metabolism. PMID:30365505
Raw N-glycan mass spectrometry imaging data on formalin-fixed mouse kidney. PMID:30364692
Integrated Succinylome and Metabolome Profiling Reveals Crucial Role of S-Ribosylhomocysteine Lyase in Quorum Sensing and Metabolism of Aeromonas hydrophila. PMID:30352804
Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes. PMID:30343899
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. PMID:30299502
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer. PMID:30278072
Infection-Induced Peroxisome Biogenesis Is a Metabolic Strategy for Herpesvirus Replication. PMID:30269970
iProX: an integrated proteome resource. PMID:30252093
Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1). PMID:30250475
Proteomics study of human cord blood reticulocyte-derived exosomes. PMID:30232403
Evaluation of Unconventional Protein Secretion by Saccharomyces cerevisiae and other Fungi. PMID:30200367
High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform. PMID:30190555
Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing. PMID:30184435
Assembling the Community-Scale Discoverable Human Proteome. PMID:30172843
Proteomic Analysis of the Function of a Novel Cold-Regulated Multispanning Transmembrane Protein COR413-PM1 in Arabidopsis. PMID:30158496
Plasmodium Parasites Viewed through Proteomics. PMID:30146456
Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy. PMID:30141336
Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates. PMID:30140170
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
An Integrated, High-Throughput Strategy for Multiomic Systems Level Analysis. PMID:30114907
Microscale Reversed-Phase Liquid Chromatography/Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Deep and Highly Sensitive Bottom-Up Proteomics: Identification of 7500 Proteins with Five Micrograms of an MCF7 Proteome Digest. PMID:30102516
Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. PMID:30099871
An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches. PMID:30067761
Effects of cre1 modification in the white-rot fungus Pleurotus ostreatus PC9: altering substrate preference during biological pretreatment. PMID:30065786
Glutamate receptor δ2 serum antibodies in pediatric opsoclonus myoclonus ataxia syndrome. PMID:30045961
SWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis. PMID:30045750
Proteomic analysis of S-nitrosylated nuclear proteins in rat cortical neurons. PMID:29970601
Proteomic Profiling of Microtubule Self-organization in M-phase. PMID:29970457
Proteomic Analysis of Hippocampus in a Mouse Model of Depression Reveals Neuroprotective Function of Ubiquitin C-terminal Hydrolase L1 (UCH-L1) via Stress-induced Cysteine Oxidative Modifications. PMID:29959188
Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm. PMID:29951075
Proteomic Analysis of Zika Virus Infected Primary Human Fetal Neural Progenitors Suggests a Role for Doublecortin in the Pathological Consequences of Infection in the Cortex. PMID:29922247
Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents. PMID:29900295
Quantitative phosphoproteomic analysis of the molecular substrates of sleep need. PMID:29899451
Proteomic and Biochemical Comparison of the Cellular Interaction Partners of Human VPS33A and VPS33B. PMID:29778605
A novel USP9X substrate TTK contributes to tumorigenesis in non-small-cell lung cancer. PMID:29721084
Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells. PMID:29713380
SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast. PMID:29688323
The response to neoadjuvant chemoradiotherapy with 5-fluorouracil in locally advanced rectal cancer patients: a predictive proteomic signature. PMID:29681787
Biocuration: Distilling data into knowledge. PMID:29659566
Homozygous TAF8 mutation in a patient with intellectual disability results in undetectable TAF8 protein, but preserved RNA polymerase II transcription. PMID:29648665
A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation. PMID:29641209
Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics. PMID:29630649
Challenges and Opportunities for Biological Mass Spectrometry Core Facilities in the Developing World. PMID:29623005
Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo. PMID:29599781
Absolute quantification of selected photosynthetic electron transfer proteins in Chlamydomonas reinhardtii in the presence and absence of oxygen. PMID:29594952
Strong cation exchange-reversed phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry platform with high peak capacity for deep bottom-up proteomics. PMID:29475469
Application of targeted mass spectrometry in bottom-up proteomics for systems biology research. PMID:29452276
Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis. PMID:29440448
Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals. PMID:29403507
Proteome-Wide Characterization of Phosphorylation-Induced Conformational Changes in Breast Cancer. PMID:29332387
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons. PMID:29328915
Exploring the molecular complexity of Triatoma dimidiata sialome. PMID:29288089
Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis. PMID:29283389
Insights into the Proteome of Gastrointestinal Stromal Tumors-Derived Exosomes Reveals New Potential Diagnostic Biomarkers. PMID:29242380
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510
Expression Atlas: gene and protein expression across multiple studies and organisms. PMID:29165655
A Proteomic Approach to Investigate the Drought Response in the Orphan Crop Eragrostis tef. PMID:29140297
Characterization of the Molecular Mechanisms Underlying Glucose Stimulated Insulin Secretion from Isolated Pancreatic β-cells Using Post-translational Modification Specific Proteomics (PTMomics). PMID:29113996
ALS Associated Mutations in Matrin 3 Alter Protein-Protein Interactions and Impede mRNA Nuclear Export. PMID:29109432
MEERCAT: Multiplexed Efficient Cell Free Expression of Recombinant QconCATs For Large Scale Absolute Proteome Quantification. PMID:29055021
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. PMID:28853897
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria. PMID:28814272
OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets. PMID:28792687
A community proposal to integrate proteomics activities in ELIXIR. PMID:28713550
Quantitative Proteomics Analysis of Plasmodium vivax Induced Alterations in Human Serum during the Acute and Convalescent Phases of Infection. PMID:28667326
Protein Kinase CK2: Intricate Relationships within Regulatory Cellular Networks. PMID:28273877
Differential Protein Expression Marks the Transition From Infection With Opisthorchis viverrini to Cholangiocarcinoma. PMID:28232516
A Golden Age for Working with Public Proteomics Data. PMID:28118949
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
jPOSTrepo: an international standard data repository for proteomes PubMed citations: 140.

140 articles citing: jPOSTrepo: an international standard data repository for proteomes

Mitochondrial Oxidative Stress Induces Cardiac Fibrosis in Obese Rats through Modulation of Transthyretin. PMID:35897655
Dynamic Interactions of Post Cleaved NS2B Cofactor and NS3 Protease Identified by Integrative Structural Approaches. PMID:35891424
Morphological and Proteomic Analyses of Soybean Seedling Interaction Mechanism Affected by Fiber Crosslinked with Zinc-Oxide Nanoparticles. PMID:35806419
pSNAP: Proteome-wide analysis of elongating nascent polypeptide chains. PMID:35754732
Shotgun Proteomics Revealed Preferential Degradation of Misfolded In Vivo Obligate GroE Substrates by Lon Protease in Escherichia coli. PMID:35744894
The obligate intracellular bacterium Orientia tsutsugamushi differentiates into a developmentally distinct extracellular state. PMID:35739103
ANGT_HUMAN[448-462], an Anorexigenic Peptide Identified Using Plasma Peptidomics. PMID:35702602
Morphological, Biochemical, and Proteomic Analyses to Understand the Promotive Effects of Plant-Derived Smoke Solution on Wheat Growth under Flooding Stress. PMID:35684281
Proteomics Analysis in Japanese Medaka Oryzias latipes Exposed to Humic Acid Revealed Suppression of Innate Immunity and Coagulation Proteins. PMID:35625410
Hololectin Interdomain Linker Determines Asparaginyl Endopeptidase-Mediated Maturation of Antifungal Hevein-Like Peptides in Oats. PMID:35620686
Multi-omics approach reveals posttranscriptionally regulated genes are essential for human pluripotent stem cells. PMID:35573189
Arginine Methyltransferase PRMT7 Deregulates Expression of RUNX1 Target Genes in T-Cell Acute Lymphoblastic Leukemia. PMID:35565298
Proteomic, Biochemical, and Morphological Analyses of the Effect of Silver Nanoparticles Mixed with Organic and Inorganic Chemicals on Wheat Growth. PMID:35563885
Single-Shot 10K Proteome Approach: Over 10,000 Protein Identifications by Data-Independent Acquisition-Based Single-Shot Proteomics with Ion Mobility Spectrometry. PMID:35522919
Systematic identification of ALK substrates by integrated phosphoproteome and interactome analysis. PMID:35508387
Glycoprotein nonmetastatic melanoma protein B regulates lysosomal integrity and lifespan of senescent cells. PMID:35444208
Calcium-dependent protein kinase 16 phosphorylates and activates the aquaporin PIP2;2 to regulate reversible flower opening in Gentiana scabra. PMID:35441691
Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: proteomic evidence. PMID:35396956
Proteomics and phosphoproteomics datasets of a muscle-specific STIM1 loss-of-function mouse model. PMID:35345842
Comprehensive proteomic profiling of plasma and serum phosphatidylserine-positive extracellular vesicles reveals tissue-specific proteins. PMID:35340435
Inducible Systemic Gcn1 Deletion in Mice Leads to Transient Body Weight Loss upon Tamoxifen Treatment Associated with Decrease of Fat and Liver Glycogen Storage. PMID:35328622
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data. PMID:35325188
Strip1 regulates retinal ganglion cell survival by suppressing Jun-mediated apoptosis to promote retinal neural circuit formation. PMID:35314028
Molecular mechanism of ethanol fermentation inhibition via protein tyrosine nitration of pyruvate decarboxylase by reactive nitrogen species in yeast. PMID:35304512
GSK3 inhibition circumvents and overcomes acquired lorlatinib resistance in ALK-rearranged non-small-cell lung cancer. PMID:35301419
Leveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size Exclusion Chromatography for Proteome-wide Cross-Linking Mass Spectrometry. PMID:35276035
A critical role of an oxygen-responsive gene for aerobic nitrogenase activity in Azotobacter vinelandii and its application to Escherichia coli. PMID:35264690
In-Depth Serum Proteomics by DIA-MS with In Silico Spectral Libraries Reveals Dynamics during the Active Phase of Systemic Juvenile Idiopathic Arthritis. PMID:35252692
Simple But Efficacious Enrichment of Integral Membrane Proteins and Their Interactions for In-Depth Membrane Proteomics. PMID:35085786
Interventional- and amputation-stage muscle proteomes in the chronically threatened ischemic limb. PMID:35073463
Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2. PMID:35058437
Differential Phospho-Signatures in Blood Cells Identify LRRK2 G2019S Carriers in Parkinson's Disease. PMID:35049090
Dataset on the effects of environmentally relevant humic acid concentrations on the liver protein profile in Japanese medaka (Oryzias latipes). PMID:35036493
Polymorphonuclear Cells Show Features of Dysfunctional Activation During Fatal Sepsis. PMID:34966382
Alterations in sphingolipid composition and mitochondrial bioenergetics represent synergistic therapeutic vulnerabilities linked to multidrug resistance in leukemia. PMID:34888943
Enzyme systems involved in glucosinolate metabolism in Companilactobacillus farciminis KB1089. PMID:34887468
LC-MS peak assignment based on unanimous selection by six machine learning algorithms. PMID:34862414
Fungicidal Activity of Recombinant Javanicin against Cryptococcus neoformans Is Associated with Intracellular Target(s) Involved in Carbohydrate and Energy Metabolic Processes. PMID:34834105
Discovery of anti-inflammatory physiological peptides that promote tissue repair by reinforcing epithelial barrier formation. PMID:34788088
Peptide barcoding for one-pot evaluation of sequence-function relationships of nanobodies. PMID:34728738
TOC1 clock protein phosphorylation controls complex formation with NF-YB/C to repress hypocotyl growth. PMID:34726281
Eukaryotic initiation factor 2 signaling behind neural invasion linked with lymphatic and vascular invasion in pancreatic cancer. PMID:34707166
Subcellular Proteomics to Understand Promotive Effect of Plant-Derived Smoke Solution on Soybean Root. PMID:34698284
Application of Proteomics in Cancer: Recent Trends and Approaches for Biomarkers Discovery. PMID:34631760
Phosphorylation of NONPHOTOTROPIC HYPOCOTYL3 affects photosensory adaptation during the phototropic response. PMID:34608954
Identification and Functional Characterization of a Novel Androgen Receptor Coregulator, EAP1. PMID:34585037
Wilms' tumor 1-associating protein complex regulates alternative splicing and polyadenylation at potential G-quadruplex-forming splice site sequences. PMID:34582888
Aim32 is a dual-localized 2Fe-2S mitochondrial protein that functions in redox quality control. PMID:34461091
Proteomic and Biochemical Analyses of the Mechanism of Tolerance in Mutant Soybean Responding to Flooding Stress. PMID:34445752
ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer. PMID:34381029
Phosphatidylserine-deficient small extracellular vesicle is a major somatic cell-derived sEV subpopulation in blood. PMID:34368655
Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells. PMID:34351778
Isthmin-1 is an adipokine that promotes glucose uptake and improves glucose tolerance and hepatic steatosis. PMID:34348115
GIP_HUMAN[22-51] is a new proatherogenic peptide identified by native plasma peptidomics. PMID:34262109
Olfactory Bulb Proteomics Reveals Widespread Proteostatic Disturbances in Mixed Dementia and Guides for Potential Serum Biomarkers to Discriminate Alzheimer Disease and Mixed Dementia Phenotypes. PMID:34204996
Intrinsic OXPHOS limitations underlie cellular bioenergetics in leukemia. PMID:34132194
Reliable identification of protein-protein interactions by crosslinking mass spectrometry. PMID:34117231
Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry. PMID:34050149
Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions. PMID:34046017
Non-microtubule tubulin-based backbone and subordinate components of postsynaptic density lattices. PMID:34006534
A data-independent acquisition-based global phosphoproteomics system enables deep profiling. PMID:33953186
A Simple Method for In-Depth Proteome Analysis of Mammalian Cell Culture Conditioned Media Containing Fetal Bovine Serum. PMID:33806404
p300 Serine 89: A Critical Signaling Integrator and Its Effects on Intestinal Homeostasis and Repair. PMID:33799418
Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics. PMID:33649493
Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER. PMID:33631195
Effect of Phosphorylation on the Collision Cross Sections of Peptide Ions in Ion Mobility Spectrometry. PMID:33552826
Chronic caloric restriction maintains a youthful phosphoproteome in aged skeletal muscle. PMID:33529682
Isolation of Acetylated and Unmodified Protein N-Terminal Peptides by Strong Cation Exchange Chromatographic Separation of TrypN-Digested Peptides. PMID:33517145
A novel all-in-one conditional knockout system uncovered an essential role of DDX1 in ribosomal RNA processing. PMID:33503245
Utility of Claudin-3 in extracellular vesicles from human bile as biomarkers of cholangiocarcinoma. PMID:33441949
A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes. PMID:33398074
Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. PMID:33397462
O-GlcNAcylation Suppresses the Ion Current IClswell by Preventing the Binding of the Protein ICln to α-Integrin. PMID:33330510
Organ-specific expression and epigenetic traits of genes encoding digestive enzymes in the lance-leaf sundew (Drosera adelae). PMID:33247920
Aberrant (pro)renin receptor expression induces genomic instability in pancreatic ductal adenocarcinoma through upregulation of SMARCA5/SNF2H. PMID:33247206
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Sirtuin 5 Is Regulated by the SCFCyclin F Ubiquitin Ligase and Is Involved in Cell Cycle Control. PMID:33168699
Anti-Influenza Activity of the Ribonuclease Binase: Cellular Targets Detected by Quantitative Proteomics. PMID:33167434
Calpain-2 participates in the process of calpain-1 inactivation. PMID:33078830
Novel approach to quantify mitochondrial content and intrinsic bioenergetic efficiency across organs. PMID:33077793
Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice. PMID:32977500
Bovine Respiratory Syncytial Virus Enhances the Adherence of Pasteurella multocida to Bovine Lower Respiratory Tract Epithelial Cells by Upregulating the Platelet-Activating Factor Receptor. PMID:32849350
Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt. PMID:32814826
Serum proteome profiles revealed dysregulated proteins and mechanisms associated with fibromyalgia syndrome in women. PMID:32704114
Nucleosome binding by the pioneer transcription factor OCT4. PMID:32678275
The Bartonella autotransporter BafA activates the host VEGF pathway to drive angiogenesis. PMID:32678094
Extracellular vesicles secreted by HBV-infected cells modulate HBV persistence in hydrodynamic HBV transfection mouse model. PMID:32651230
A marine photosynthetic microbial cell factory as a platform for spider silk production. PMID:32641733
BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). PMID:32554809
Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis. PMID:32308664
Proteogenomic analysis of granulocyte macrophage colony- stimulating factor autoantibodies in the blood of a patient with autoimmune pulmonary alveolar proteinosis. PMID:32188922
In silico Prediction of Protein-Protein Interaction Network Induced by Manganese II in Meyerozyma guilliermondii. PMID:32140149
An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics. PMID:32127492
Subcellular proteomics combined with bioenergetic phenotyping reveals protein biomarkers of respiratory insufficiency in the setting of proofreading-deficient mitochondrial polymerase. PMID:32107436
Serine-Arginine Protein Kinase 1 Regulates Ebola Virus Transcription. PMID:32098814
Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens. PMID:32089736
Comparative Analysis of the Effect of Inorganic and Organic Chemicals with Silver Nanoparticles on Soybean under Flooding Stress. PMID:32075105
Proteomic Analysis of Human Serum from Patients with Chronic Kidney Disease. PMID:32046176
Proteomic Profiling Reveals the Architecture of Granulomatous Lesions Caused by Tuberculosis and Mycobacterium avium Complex Lung Disease. PMID:32010116
Proteomic Analysis of Irradiation with Millimeter Waves on Soybean Growth under Flooding Conditions. PMID:31940953
PITHD1 is a proteasome-interacting protein essential for male fertilization. PMID:31915251
YAP1 mediates survival of ALK-rearranged lung cancer cells treated with alectinib via pro-apoptotic protein regulation. PMID:31900393
Cyanidioschyzon merolae aurora kinase phosphorylates evolutionarily conserved sites on its target to regulate mitochondrial division. PMID:31886415
Disruption of Acetyl-Lysine Turnover in Muscle Mitochondria Promotes Insulin Resistance and Redox Stress without Overt Respiratory Dysfunction. PMID:31813822
An expanded mouse testis transcriptome and mass spectrometry defines novel proteins. PMID:31677600
Enhanced carbonyl stress induces irreversible multimerization of CRMP2 in schizophrenia pathogenesis. PMID:31591136
Mycobacterium tuberculosis sensor kinase DosS modulates the autophagosome in a DosR-independent manner. PMID:31552302
An Effective Protocol for Proteome Analysis of Medaka (Oryzias latipes) after Acute Exposure to Ionizing Radiation. PMID:31366181
Large-scale Discovery of Substrates of the Human Kinome. PMID:31324866
A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition. PMID:31186290
Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation. PMID:31097591
Molecular Responses of Maize Shoot to a Plant Derived Smoke Solution. PMID:30875914
Murine osteoclasts secrete serine protease HtrA1 capable of degrading osteoprotegerin in the bone microenvironment. PMID:30854478
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. PMID:30843680
Respiratory Phenomics across Multiple Models of Protein Hyperacylation in Cardiac Mitochondria Reveals a Marginal Impact on Bioenergetics. PMID:30726738
The sensitivity to Hsp90 inhibitors of both normal and oncogenically transformed cells is determined by the equilibrium between cellular quiescence and activity. PMID:30726209
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
Release of functional peptides from mother's milk and fortifier proteins in the premature infant stomach. PMID:30496293
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
Identification of a Specific Translational Machinery via TCTP-EF1A2 Interaction Regulating NF1-associated Tumor Growth by Affinity Purification and Data-independent Mass Spectrometry Acquisition (AP-DIA). PMID:30381327
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes. PMID:30266865
iProX: an integrated proteome resource. PMID:30252093
Evaluation of Unconventional Protein Secretion by Saccharomyces cerevisiae and other Fungi. PMID:30200367
Improved phosphoproteomic analysis for phosphosignaling and active-kinome profiling in Matrigel-embedded spheroids and patient-derived organoids. PMID:30061712
SIRT7 has a critical role in bone formation by regulating lysine acylation of SP7/Osterix. PMID:30026585
Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress. PMID:30006488
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3. PMID:29730990
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria. PMID:29728462
Degradation of the endoplasmic reticulum-anchored transcription factor MyRF by the ubiquitin ligase SCFFbxw7 in a manner dependent on the kinase GSK-3. PMID:29472293
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands. PMID:29447197
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. PMID:29386051
Relative Quantitative Proteomic Analysis of Brucella abortus Reveals Metabolic Adaptation to Multiple Environmental Stresses. PMID:29238329
Female mice lacking Pald1 exhibit endothelial cell apoptosis and emphysema. PMID:29133847
Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. PMID:28887381
Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab. PMID:28874695
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
EGF hijacks miR-198/FSTL1 wound-healing switch and steers a two-pronged pathway toward metastasis. PMID:28827448
Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry. PMID:28283928
http://dx.doi.org/10.1093/nar/1987

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mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: jPOSTrepo; Japan Proteome Standard Repository; DOI: https://doi.org/10.25504/FAIRsharing.p899f7; Last edited: Jan. 8, 2019, 1:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

proteomics resources
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

amino acids
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

mass spectra
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

mass spectrometry
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

peptide identification
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

protein identification
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

proteomics
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

sequencing
metasource: re3data.org
version: re3data.org: jPOSTrepo; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z375 last accessed: 2022-11-04

mass spectrometry spectra proteomics resources amino acids mass spectra mass spectrometry peptide identification protein identification proteomics sequencing

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GlycoPOST

Chemotion repository

PRoteomics IDEntifications database

The Global Proteome Machine Database

MassBank Europe

SWATHAtlas

iProX

Proteome-pI : proteome isoelectric point database

Mass Spectrometry Virtual Interactive Environment

MIAPE: Mass Spectrometry Informatics

HUPO PSI Mass Spectrometry Controlled Vocabulary

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MIAPE: Mass Spectrometry

Panorama Public

Repository Universitas Medan Area

Manitoba Population Research Data Repository

Top Down Proteomics Repository

ProteomeXchange

UniCarb-DR

Rice Proteome Database