GenomeNet
Network of database and computational resources including KEGG (pathways, interactions, etc.) and DBGET/LinkDB (an integrated database retrieval system). It also hosts several web-based tools for sequence analysis (i.e. Blast, Motif, Clustal W).
Description
More detailed information about this field from each metasource.
Network of database and computational resources including KEGG (pathways, interactions, etc.) and DBGET/LinkDB (an integrated database retrieval system). It also hosts several web-based tools for sequence analysis (i.e. Blast, Motif, Clustal W).
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:58.453387
Webpage:
http://www.genome.ad.jp/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
The KEGG database
PMID: 12539951
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
DBGET/LinkDB: an integrated database retrieval system
PMID: 9697222
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
Publications
More detailed information about this field from each metasource.
The KEGG database
PMID: 12539951
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
DBGET/LinkDB: an integrated database retrieval system
PMID: 9697222
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
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The KEGG database
PubMed citations: 456.
456 articles citing: The KEGG database
Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity: Implications of Seizure-like Neuronal Hyperexcitability Followed by Tauopathy. PMID:35892672
Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota. PMID:35840579
Dissecting the Genetic Structure of Maize Leaf Sheaths at Seedling Stage by Image-Based High-Throughput Phenotypic Acquisition and Characterization. PMID:35837446
Systematic analysis of the sugar accumulation mechanism in sucrose- and hexose- accumulating cherry tomato fruits. PMID:35729535
Increased expression of tribbles homolog 3 predicts poor prognosis and correlates with tumor immunity in clear cell renal cell carcinoma: a bioinformatics study. PMID:35726370
Circulating Exosomal miR-144-3p from Crohn's Disease Patients Inhibits Human Umbilical Vein Endothelial Cell Function by Targeting FN1. PMID:35692876
NUF2 Is a Potential Immunological and Prognostic Marker for Non-Small-Cell Lung Cancer. PMID:35600043
Revealing the Immune Heterogeneity between Systemic Lupus Erythematosus and Rheumatoid Arthritis Based on Multi-Omics Data Analysis. PMID:35563556
Identification of Differentially Expressed Genes Reveal Conserved Mechanisms in the Rice-Magnaporthe oryzae Interaction. PMID:35449886
Identification and Validation of Hub Genes with Poor Prognosis in Hepatocellular Carcinoma by Integrated Bioinformatical Analysis. PMID:35431572
Screening of Potential Key Biomarkers for Ewing Sarcoma: Evidence from Gene Array Analysis. PMID:35342299
Protein interaction networks provide insight into fetal origins of chronic obstructive pulmonary disease. PMID:35331221
Immune Defense Mechanism of Reticulitermes chinensis Snyder (Blattodea: Isoptera) against Serratia marcescens Bizio. PMID:35323524
Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species. PMID:35302987
Isolation and transcriptome analysis of a biotechnologically promising Black Sea protist, Thraustochytrium aureum ssp. strugatskii. PMID:35287351
Multilocation proteins in organelle communication: Based on protein-protein interactions. PMID:35229068
Deoxycholic Acid Modulates Cell-Junction Gene Expression and Increases Intestinal Barrier Dysfunction. PMID:35163990
Identification of biomarkers in colon cancer based on bioinformatic analysis. PMID:35117850
A New Prospect for the Treatment of Nephrotic Syndrome Based on Network Pharmacology Analysis. PMID:35098155
Mining the Wheat Grain Proteome. PMID:35054899
Identification of prognostic biomarkers in papillary renal cell carcinoma and PTTG1 may serve as a biomarker for predicting immunotherapy response. PMID:35037540
Transcriptomic analysis of Pseudomonas ogarae F113 reveals the antagonistic roles of AmrZ and FleQ during rhizosphere adaption. PMID:35012704
Bioinformatics study on different gene expression profiles of fibroblasts and vascular endothelial cells in keloids. PMID:34964740
A Novel Four-Gene Signature as a Potential Prognostic Biomarker for Hepatocellular Carcinoma. PMID:34950206
Phylosymbiosis in the Rhizosphere Microbiome Extends to Nitrogen Cycle Functional Potential. PMID:34946078
Comprehensive analysis of the ceRNA network in coronary artery disease. PMID:34930980
Analysis of a circRNA-, miRNA-, and mRNA-associated ceRNA network reveals potential biomarkers in preeclampsia a ceRNA network in preeclampsia. PMID:34894939
Stable Isotopes for Tracing Cardiac Metabolism in Diseases. PMID:34859064
Identification of KIF4A as a prognostic biomarker for esophageal squamous cell carcinoma. PMID:34775374
Bioinformatics Analysis for Identifying Pertinent Pathways and Genes in Sepsis. PMID:34760021
Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum. PMID:34683489
Network Pharmacology-Based Study of the Underlying Mechanisms of Huangqi Sijunzi Decoction for Alzheimer's Disease. PMID:34650613
Identification and Validation of Potential Candidate Genes of Colorectal Cancer in Response to Fusobacterium nucleatum Infection. PMID:34650590
Identification of cancer stemness related miRNA(s) using integrated bioinformatics analysis and in vitro validation. PMID:34631347
Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks. PMID:34590268
Chromosome-Level Genome Assembly and Annotation of the Fiber Flax (Linum usitatissimum) Genome. PMID:34589116
Expression and prognosis of CDC45 in cervical cancer based on the GEO database. PMID:34557356
Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets. PMID:34549895
Mechanism Underlying the Role of LuxR Family Transcriptional Regulator abaR in Biofilm Formation by Acinetobacter baumannii. PMID:34522977
Integrated analysis of the molecular mechanisms in idiopathic pulmonary fibrosis. PMID:34522168
Silver Nanoparticles Derived by Artemisia arborescens Reveal Anticancer and Apoptosis-Inducing Effects. PMID:34445327
Capabilities of bioinformatics tools for optimizing physicochemical features of proteins used in Nano biosensors: A short overview of the tools related to bioinformatics. PMID:34401530
Absence of Circadian Rhythm in Fecal Microbiota of Laying Hens under Common Light. PMID:34359193
Identification of Hub Genes Associated with Diabetes Mellitus and Tuberculosis Using Bioinformatic Analysis. PMID:34354368
Comprehensive Profile Analysis of Differentially Expressed circRNAs in Glucose Deprivation-Induced Human Nucleus Pulposus Cell Degeneration. PMID:34285912
Global Screening of LUBAC and OTULIN Interacting Proteins by Human Proteome Microarray. PMID:34262903
The potential role of long noncoding RNAs in primary open-angle glaucoma. PMID:34244823
Identification of endometriosis-associated genes and pathways based on bioinformatic analysis. PMID:34232189
Prediction of Human-Plasmodium vivax Protein Associations From Heterogeneous Network Structures Based on Machine-Learning Approach. PMID:34188457
Identification of Nrf2-responsive microRNA networks as putative mediators of myocardial reductive stress. PMID:34099738
The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinoma. PMID:34090518
Co-expression Network Revealed Roles of RNA m6A Methylation in Human β-Cell of Type 2 Diabetes Mellitus. PMID:34084770
Transcriptional Profiling of Porcine Blastocysts Produced In Vitro in a Chemically Defined Culture Medium. PMID:34069238
AMOTL2‑knockdown promotes the proliferation, migration and invasion of glioma by regulating β‑catenin nuclear localization. PMID:34036399
Hub biomarkers for the diagnosis and treatment of glioblastoma based on microarray technology. PMID:34018447
An Investigation of Post-radiation Gene Expression Profiles: A System Biology Study. PMID:33995977
Screening and identification of LMNB1 and DLGAP5, two key biomarkers in gliomas. PMID:33956061
Identification of the Key Role of NF-κB Signaling Pathway in the Treatment of Osteoarthritis With Bushen Zhuangjin Decoction, a Verification Based on Network Pharmacology Approach. PMID:33912052
Expression and prognosis analyses of BUB1, BUB1B and BUB3 in human sarcoma. PMID:33872216
Prognostic Signature for Lung Adenocarcinoma Patients Based on Cell-Cycle-Related Genes. PMID:33869220
Molecular and Clinical Characterization of CCT2 Expression and Prognosis via Large-Scale Transcriptome Profile of Breast Cancer. PMID:33869000
Integrated Genomic and Transcriptomic Analysis reveals key genes for predicting dual-phenotype Hepatocellular Carcinoma Prognosis. PMID:33854600
First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera). PMID:33838656
Preliminary functional analysis of the subgingival microbiota of cats with periodontitis and feline chronic gingivostomatitis. PMID:33767308
Coexpressed Genes That Promote the Infiltration of M2 Macrophages in Melanoma Can Evaluate the Prognosis and Immunotherapy Outcome. PMID:33748290
Computational approach to decipher cellular interactors and drug targets during co-infection of SARS-CoV-2, Dengue, and Chikungunya virus. PMID:33723515
Omics-Driven Biotechnology for Industrial Applications. PMID:33708762
Knockdown of RIPK2 Inhibits Proliferation and Migration, and Induces Apoptosis via the NF-κB Signaling Pathway in Gastric Cancer. PMID:33633788
The immune-related biomarker TEK inhibits the development of clear cell renal cell carcinoma (ccRCC) by regulating AKT phosphorylation. PMID:33602230
Screening and identification of hub genes in bladder cancer by bioinformatics analysis and KIF11 is a potential prognostic biomarker. PMID:33574944
Integrated bioinformatic analysis identifies COL4A3, COL4A4, and KCNJ1 as key biomarkers in Wilms tumor. PMID:33564352
MUC4 is a novel mediator in H. pylori infection-related pancreatic cancer. PMID:33552244
Genome-Wide Association Study of Maize Aboveground Dry Matter Accumulation at Seedling Stage. PMID:33519889
In Silico Identification of the Complex Interplay between Regulatory SNPs, Transcription Factors, and Their Related Genes in Brassica napus L. Using Multi-Omics Data. PMID:33466789
Omega 3 fatty acids stimulate thermogenesis during torpor in the Arctic Ground Squirrel. PMID:33446684
Identification of a Transcriptional Prognostic Signature From Five Metabolic Pathways in Oral Squamous Cell Carcinoma. PMID:33425725
Identification of Core Genes Involved in the Metastasis of Clear Cell Renal Cell Carcinoma. PMID:33408516
IFI27 may predict and evaluate the severity of respiratory syncytial virus infection in preterm infants. PMID:33388093
Identification of Tumor Microenvironment-Related Prognostic Biomarkers in Luminal Breast Cancer. PMID:33329695
Nitrogen recycling buffers against ammonia toxicity from skeletal muscle breakdown in hibernating arctic ground squirrels. PMID:33288952
CD74, a novel predictor for bronchopulmonary dysplasia in preterm infants. PMID:33235138
Discovering novel driver mutations from pan-cancer analysis of mutational and gene expression profiles. PMID:33232371
Exploring biomarkers and therapeutic targets for pressure overload induced heart failure based on microarray data. PMID:33224746
Comparative Analysis of Soil Microbiome Profiles in the Companion Planting of White Clover and Orchard Grass Using 16S rRNA Gene Sequencing Data. PMID:33042174
Bioinformatic Identification of Potential Hub Genes in Muscle-Invasive Bladder Urothelial Carcinoma. PMID:33035117
Screening and Identification of Key Biomarkers in Acquired Lapatinib-Resistant Breast Cancer. PMID:33013420
Circulating Metabolites as Potential Biomarkers for Neurological Disorders-Metabolites in Neurological Disorders. PMID:33003305
Identification and validation of novel metastasis-related signatures of clear cell renal cell carcinoma using gene expression databases. PMID:32913492
Identification of circular RNA hsa_circ_0044556 and its effect on the progression of colorectal cancer. PMID:32884449
Screening and Identification of Potential Peripheral Blood Biomarkers for Alzheimer's Disease Based on Bioinformatics Analysis. PMID:32812532
Drug efficacy and toxicity prediction: an innovative application of transcriptomic data. PMID:32780246
Bioinformatics analysis shows that TOP2A functions as a key candidate gene in the progression of cervical cancer. PMID:32765860
Identification of key genes in calcific aortic valve disease by integrated bioinformatics analysis. PMID:32702920
Identifying the novel key genes in renal cell carcinoma by bioinformatics analysis and cell experiments. PMID:32699530
Identification of Key Genes and Pathways Associated With Irradiation in Breast Cancer Tissue and Breast Cancer Cell Lines. PMID:32684870
Tumor somatic mutations also existing as germline polymorphisms may help to identify functional SNPs from genome-wide association studies. PMID:32681635
Network-principled deep generative models for designing drug combinations as graph sets. PMID:32657357
The Zebra Mussel (Dreissena polymorpha) as a Model Organism for Ecotoxicological Studies: A Prior 1H NMR Spectrum Interpretation of a Whole Body Extract for Metabolism Monitoring. PMID:32570933
Selection of established tumour cells through narrow diameter micropores enriches for elevated Ras/Raf/MEK/ERK MAPK signalling and enhanced tumour growth. PMID:32569510
Reveal the Regulation Patterns of Prognosis-Related miRNAs and lncRNAs Across Solid Tumors in the Cancer Genome Atlas. PMID:32523951
Identifying multiple collagen gene family members as potential gastric cancer biomarkers using integrated bioinformatics analysis. PMID:32509452
Bioinformatics analysis of the biological changes involved in the osteogenic differentiation of human mesenchymal stem cells. PMID:32463168
Seminal Plasma Induces Overexpression of Genes Associated with Embryo Development and Implantation in Day-6 Porcine Blastocysts. PMID:32455957
A disintegrin and metalloproteinase domain 17-epidermal growth factor receptor signaling contributes to oral cancer pain. PMID:32453136
Screening and identification of key biomarkers for retinoblastoma: Evidence from bioinformatics analysis. PMID:32443297
Identification of potential novel differentially-expressed genes and their role in invasion and migration in renal cell carcinoma. PMID:32420905
MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer. PMID:32420375
Screening and Identification of Differentially Expressed Genes Expressed among Left and Right Colon Adenocarcinoma. PMID:32420374
Key genes of renal tubular necrosis: a bioinformatics analysis. PMID:32420172
The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining. PMID:32351997
Differential DNA Methylation Encodes Proliferation and Senescence Programs in Human Adipose-Derived Mesenchymal Stem Cells. PMID:32351540
Retinal astrocytes transcriptome reveals Cyp1b1 regulates the expression of genes involved in cell adhesion and migration. PMID:32330152
Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases. PMID:32316560
Comparative genomics reveals bamboo feeding adaptability in the giant panda (Ailuropoda melanoleuca). PMID:32292275
A Protocol for the Multi-Omic Integration of Cervical Microbiota and Urine Metabolomics to Understand Human Papillomavirus (HPV)-Driven Dysbiosis. PMID:32276347
Identification of core genes associated with prostate cancer progression and outcome via bioinformatics analysis in multiple databases. PMID:32266115
Exercise Training in Obese Rats Does Not Induce Browning at Thermoneutrality and Induces a Muscle-Like Signature in Brown Adipose Tissue. PMID:32265830
Heterogeneity at the invasion front of triple negative breast cancer cells. PMID:32238832
The Identification of Key Gene Expression Signature and Biological Pathways in Metastatic Renal Cell Carcinoma. PMID:32194783
Identification of Core Gene Expression Signature and Key Pathways in Colorectal Cancer. PMID:32153633
The genome evolution and low-phosphorus adaptation in white lupin. PMID:32103018
Heterogeneous Network Model to Identify Potential Associations Between Plasmodium vivax and Human Proteins. PMID:32075230
High-Quality Genome Assembly of Eriocheir japonica sinensis Reveals Its Unique Genome Evolution. PMID:32010195
Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus. PMID:31969984
Proteomics and Bioinformatics Analysis of Cartilage in Post-Traumatic Osteoarthritis in a Mini-Pig Model of Anterior Cruciate Ligament Repair. PMID:31916546
ASPM promotes glioblastoma growth by regulating G1 restriction point progression and Wnt-β-catenin signaling. PMID:31905171
Screening, identification and validation of CCND1 and PECAM1/CD31 for predicting prognosis in renal cell carcinoma patients. PMID:31850854
Comparative Network Pharmacology Analysis of Classical TCM Prescriptions for Chronic Liver Disease. PMID:31824313
Identification of potential core genes in metastatic renal cell carcinoma using bioinformatics analysis. PMID:31814889
Identifying Microbiota Signature and Functional Rules Associated With Bacterial Subtypes in Human Intestine. PMID:31803234
Identification of biomarkers and construction of a microRNA-mRNA regulatory network for ependymoma using integrated bioinformatics analysis. PMID:31788082
Bioinformatics analysis of Ewing's sarcoma: Seeking key candidate genes and pathways. PMID:31788075
Screening and identification of key biomarkers in prostate cancer using bioinformatics. PMID:31746380
Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum. PMID:31730444
Measurement of Conditional Relatedness Between Genes Using Fully Convolutional Neural Network. PMID:31695723
Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation. PMID:31684871
A Phylogenomic Approach to Clarifying the Relationship of Mesodinium within the Ciliophora: A Case Study in the Complexity of Mixed-Species Transcriptome Analyses. PMID:31665294
INPP4B As A Prognostic And Diagnostic Marker Regulates Cell Growth Of Pancreatic Cancer Via Activating AKT. PMID:31632078
Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis. PMID:31611976
Screening and authentication of molecular markers in malignant glioblastoma based on gene expression profiles. PMID:31611967
Identification of key biomarkers and potential molecular mechanisms in lung cancer by bioinformatics analysis. PMID:31611952
Noninvasive Identification of Immune-Related Biomarkers in Hepatocellular Carcinoma. PMID:31531018
Identification of differentially expressed genes between primary lung cancer and lymph node metastasis via bioinformatic analysis. PMID:31516588
Prognostic value and immune infiltration of novel signatures in clear cell renal cell carcinoma microenvironment. PMID:31493764
TPM2 as a potential predictive biomarker for atherosclerosis. PMID:31487691
Identification and Characterization of MiRNAs in Coccomyxa subellipsoidea C-169. PMID:31337051
PRPF40A as a potential diagnostic and prognostic marker is upregulated in pancreatic cancer tissues and cell lines: an integrated bioinformatics data analysis. PMID:31303762
Bioinformatics analysis of key biomarkers and pathways in KSHV infected endothelial cells. PMID:31277155
Identify the Key Active Ingredients and Pharmacological Mechanisms of Compound XiongShao Capsule in Treating Diabetic Peripheral Neuropathy by Network Pharmacology Approach. PMID:31210774
Interscapular and Perivascular Brown Adipose Tissue Respond Differently to a Short-Term High-Fat Diet. PMID:31086124
The Identification of Potential Biomarkers and Biological Pathways in Prostate Cancer. PMID:31031850
Pathway-Based Analysis of the Liver Response to Intravenous Methylprednisolone Administration in Rats: Acute Versus Chronic Dosing. PMID:31019365
Transcriptomic Hallmarks of Tumor Plasticity and Stromal Interactions in Brain Metastasis. PMID:31018140
Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. PMID:31003499
Identification of key genes involved in the metastasis of clear cell renal cell carcinoma. PMID:30988807
Using Machine Learning to Measure Relatedness Between Genes: A Multi-Features Model. PMID:30862804
Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells. PMID:30816500
Identification of survival‑associated key genes and long non‑coding RNAs in glioblastoma multiforme by weighted gene co‑expression network analysis. PMID:30816427
Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation. PMID:30813896
Identification of Grade-associated MicroRNAs in Brainstem Gliomas Based on Microarray Data. PMID:30519352
Assembly of a parts list of the human mitotic cell cycle machinery. PMID:30452682
A Network Pharmacology Approach to Uncover the Molecular Mechanisms of Herbal Formula Ban-Xia-Xie-Xin-Tang. PMID:30410554
Identification of Potential miRNAs Biomarkers for High-Grade Prostate Cancer by Integrated Bioinformatics Analysis. PMID:30367364
Identification of ceRNA network based on a RNA-seq shows prognostic lncRNA biomarkers in human lung adenocarcinoma. PMID:30344725
Viable cyanobacteria in the deep continental subsurface. PMID:30275328
The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease. PMID:30204156
PathwayConnector: finding complementary pathways to enhance functional analysis. PMID:30124768
Tetraspanin family identified as the central genes detected in gastric cancer using bioinformatics analysis. PMID:30106120
Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression. PMID:30010754
Hub genes and key pathways of non-small lung cancer identified using bioinformatics. PMID:30008938
Systems-Based Interactome Analysis for Hematopoiesis Effect of Angelicae sinensis Radix: Regulated Network of Cell Proliferation towards Hemopoiesis. PMID:29943236
Microscale Biosignatures and Abiotic Mineral Authigenesis in Little Hot Creek, California. PMID:29887837
EuPathDB: The Eukaryotic Pathogen Genomics Database Resource. PMID:29761457
Effects of Zhizi Chuanxiong Capsule () on the Abnormal Methylation in Rabbits with Atherosclerosis. PMID:29752693
Histone acetylation maps in aged mice developmentally exposed to lead: epigenetic drift and Alzheimer-related genes. PMID:29722544
Draft Genome Sequence of the Extremely Desiccation-Tolerant Cyanobacterium Gloeocapsopsis sp. Strain AAB1. PMID:29700137
Stromal miR-20a controls paracrine CXCL8 secretion in colitis and colon cancer. PMID:29560130
Identification of novel mutations in FFPE lung adenocarcinomas using DEPArray sorting technology and next-generation sequencing. PMID:29525983
Effect of Qinghuang Powder () Combined with Bupi Yishen Decoction () in Treating Patients with Refractory Cytopenia with Multilineage Dysplasia through Regulating DNA Methylation. PMID:29500545
Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes. PMID:29492402
Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. PMID:29475039
Peptide Uptake Is Essential for Borrelia burgdorferi Viability and Involves Structural and Regulatory Complexity of its Oligopeptide Transporter. PMID:29259089
Bioinformatics analysis of gene expression profiles to identify causal genes in luminal B2 breast cancer. PMID:29250180
In silico methods for linking genes and secondary metabolites: The way forward. PMID:29062931
Use of Metabolomics in Improving Assessment of Dietary Intake. PMID:29038146
Strigolactones Improve Plant Growth, Photosynthesis, and Alleviate Oxidative Stress under Salinity in Rapeseed (Brassica napus L.) by Regulating Gene Expression. PMID:29021800
De novo Assembly of the Camellia nitidissima Transcriptome Reveals Key Genes of Flower Pigment Biosynthesis. PMID:28936220
Screening and identification of key biomarkers in hepatocellular carcinoma: Evidence from bioinformatic analysis. PMID:28901457
Docking-based modeling of protein-protein interfaces for extensive structural and functional characterization of missense mutations. PMID:28841721
Identification of key genes associated with rheumatoid arthritis with bioinformatics approach. PMID:28767591
VEGFA Involves in the Use of Fluvastatin and Zoledronate Against Breast Cancer. PMID:28744693
IL-1β increases asporin expression via the NF-κB p65 pathway in nucleus pulposus cells during intervertebral disc degeneration. PMID:28646230
A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex. PMID:28644030
Global and targeted serum metabolic profiling of colorectal cancer progression. PMID:28640361
A CREB1 Gene Polymorphism (rs2253206) Is Associated with Prospective Memory in a Healthy Cohort. PMID:28559802
Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq. PMID:28477009
SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases. PMID:28460065
Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism. PMID:28448538
Model-based unsupervised learning informs metformin-induced cell-migration inhibition through an AMPK-independent mechanism in breast cancer. PMID:28423712
RNA sequence analysis of rat acute experimental pancreatitis with and without fatty liver: a gene expression profiling comparative study. PMID:28389636
Identification of dysregulated genes in rheumatoid arthritis based on bioinformatics analysis. PMID:28316886
Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development. PMID:28296881
Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer. PMID:28288164
gsSKAT: Rapid gene set analysis and multiple testing correction for rare-variant association studies using weighted linear kernels. PMID:28211093
A novel signal transduction protein: Combination of solute binding and tandem PAS-like sensor domains in one polypeptide chain. PMID:28168783
FBLN4 as candidate gene associated with long-term and short-term survival with primary glioblastoma. PMID:28144153
Identification of Key Transcription Factors Associated with Lung Squamous Cell Carcinoma. PMID:28081052
Cloning and Characterization of TaTGW-7A Gene Associated with Grain Weight in Wheat via SLAF-seq-BSA. PMID:28066462
Prediction of Possible Biomarkers and Novel Pathways Conferring Risk to Post-Traumatic Stress Disorder. PMID:27997584
xMSannotator: An R Package for Network-Based Annotation of High-Resolution Metabolomics Data. PMID:27977166
Identification of differentially expressed genes in the development of osteosarcoma using RNA-seq. PMID:27888627
Mass spectrometry imaging: a novel technology in rheumatology. PMID:27881864
Systematic approach identifies RHOA as a potential biomarker therapeutic target for Asian gastric cancer. PMID:27806312
Mechanism analysis of colorectal cancer according to the microRNA expression profile. PMID:27698796
To Unveil the Molecular Mechanisms of Qi and Blood through Systems Biology-Based Investigation into Si-Jun-Zi-Tang and Si-Wu-Tang formulae. PMID:27677604
Cellular Metabolomics Revealed the Cytoprotection of Amentoflavone, a Natural Compound, in Lipopolysaccharide-Induced Injury of Human Umbilical Vein Endothelial Cells. PMID:27618027
Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor). PMID:27586543
The Need for Integrated Approaches in Metabolic Engineering. PMID:27527588
The DUF59 Containing Protein SufT Is Involved in the Maturation of Iron-Sulfur (FeS) Proteins during Conditions of High FeS Cofactor Demand in Staphylococcus aureus. PMID:27517714
Whole Exome Sequencing Identifies TSC1/TSC2 Biallelic Loss as the Primary and Sufficient Driver Event for Renal Angiomyolipoma Development. PMID:27494029
Human Prostate Cancer Hallmarks Map. PMID:27476486
Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla. PMID:27434306
Clinical significance of mitofusin-2 and its signaling pathways in hepatocellular carcinoma. PMID:27389277
Biomonitoring in the Era of the Exposome. PMID:27385067
Identification of miRNA/mRNA-Negative Regulation Pairs in Nasopharyngeal Carcinoma. PMID:27350400
Identification of genes associated with renal cell carcinoma using gene expression profiling analysis. PMID:27347102
Post hoc Analysis for Detecting Individual Rare Variant Risk Associations Using Probit Regression Bayesian Variable Selection Methods in Case-Control Sequencing Studies. PMID:27312771
Significance of duon mutations in cancer genomes. PMID:27272679
Leveraging Comparative Genomics to Identify and Functionally Characterize Genes Associated with Sperm Phenotypes in Python bivittatus (Burmese Python). PMID:27200191
Cartography of Pathway Signal Perturbations Identifies Distinct Molecular Pathomechanisms in Malignant and Chronic Lung Diseases. PMID:27200087
RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma. PMID:27167340
(Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. PMID:27151933
Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis. PMID:27104832
Assessing Cardiac Metabolism: A Scientific Statement From the American Heart Association. PMID:27012580
Comparative Proteomic Analysis of Advanced Ovarian Cancer Tissue to Identify Potential Biomarkers of Responders and Nonresponders to First-Line Chemotherapy of Carboplatin and Paclitaxel. PMID:26997873
Ecological succession leads to chemosynthesis in mats colonizing wood in sea water. PMID:26905628
New insights into the Plasmodium vivax transcriptome using RNA-Seq. PMID:26858037
Early Regulation of Profibrotic Genes in Primary Human Cardiac Myocytes by Trypanosoma cruzi. PMID:26771187
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis. PMID:26672765
Release of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discovery. PMID:26642067
Unbiased high-throughput characterization of mussel transcriptomic responses to sublethal concentrations of the biotoxin okadaic acid. PMID:26618092
Gene expression profiles and protein-protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia. PMID:26604827
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential. PMID:26576951
Target prediction utilising negative bioactivity data covering large chemical space. PMID:26500705
Insights into transcriptional changes that accompany organelle sequestration from the stolen nucleus of Mesodinium rubrum. PMID:26475598
The mixed lineage kinase-3 inhibitor URMC-099 improves therapeutic outcomes for long-acting antiretroviral therapy. PMID:26472049
Gene expression profile analysis of ventilator-associated pneumonia. PMID:26459786
The Intervention Effects of Acupuncture on Fatigue Induced by Exhaustive Physical Exercises: A Metabolomics Investigation. PMID:26442121
Integrating Multiple Analytical Datasets to Compare Metabolite Profiles of Mouse Colonic-Cecal Contents and Feces. PMID:26378591
Application of NMR-based metabolomics for environmental assessment in the Great Lakes using zebra mussel (Dreissena polymorpha). PMID:26366138
Identification of Aberrant Chromosomal Regions in Human Breast Cancer Using Gene Expression Data and Related Gene Information. PMID:26319982
Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps. PMID:26192618
Self-Organizing Feature Maps Identify Proteins Critical to Learning in a Mouse Model of Down Syndrome. PMID:26111164
Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms That the Species Is Relatively Conserved but Has Potentially Important Strain Variation. PMID:26098837
Identification of Serum Markers of Esophageal Adenocarcinoma by Global and Targeted Metabolic Profiling. PMID:25998788
Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR). PMID:25989346
Comprehensively evaluating cis-regulatory variation in the human prostate transcriptome by using gene-level allele-specific expression. PMID:25983244
Boolean network model for GPR142 against Type 2 diabetes and relative dynamic change ratio analysis using systems and biological circuits approach. PMID:25972988
SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma. PMID:25965825
Binary gene expression patterning of the molt cycle: the case of chitin metabolism. PMID:25919476
High-resolution metabolomics to discover potential parasite-specific biomarkers in a Plasmodium falciparum erythrocytic stage culture system. PMID:25889340
Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. PMID:25887958
Tissue elasticity regulated tumor gene expression: implication for diagnostic biomarkers of primitive neuroectodermal tumor. PMID:25774514
Pathway-based analysis of genome-wide siRNA screens reveals the regulatory landscape of APP processing. PMID:25723573
Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment. PMID:25646976
Prediction of signaling cross-talks contributing to acquired drug resistance in breast cancer cells by Bayesian statistical modeling. PMID:25599599
Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses. PMID:25545100
New insights into the genetics of glioblastoma multiforme by familial exome sequencing. PMID:25537509
Role of lamin b1 in chromatin instability. PMID:25535332
Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells--a benchmarking study. PMID:25521637
Pathway crosstalk analysis of microarray gene expression profile in human hepatocellular carcinoma. PMID:25480734
Gene expression microarray analysis of the sciatic nerve of mice with diabetic neuropathy. PMID:25435094
The neurometabolic fingerprint of excessive alcohol drinking. PMID:25418809
The crimson conundrum: heme toxicity and tolerance in GAS. PMID:25414836
What makes a blood cell based miRNA expression pattern disease specific?--a miRNome analysis of blood cell subsets in lung cancer patients and healthy controls. PMID:25344866
Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases. PMID:25344396
Gene expression variability as a unifying element of the pluripotency network. PMID:25254348
A comprehensive transcriptomic analysis of infant and adult mouse ovary. PMID:25251848
Biological network exploration with Cytoscape 3. PMID:25199793
Adverse drug reaction prediction using scores produced by large-scale drug-protein target docking on high-performance computing machines. PMID:25191698
Identification of Differentially Expressed Gene after Femoral Fracture via Microarray Profiling. PMID:25110652
Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'. PMID:25083931
Gene loss rather than gene gain is associated with a host jump from monocots to dicots in the Smut Fungus Melanopsichium pennsylvanicum. PMID:25062916
Gene discovery through transcriptome sequencing for the invasive mussel Limnoperna fortunei. PMID:25047650
CASMI-The Small Molecule Identification Process from a Birmingham Perspective. PMID:24957998
Metabolic Consequences of TGFb Stimulation in CulturedPrimary Mouse Hepatocytes Screened from Transcript Data with ModeScore . PMID:24957771
What mRNA Abundances Can Tell us about Metabolism. PMID:24957650
Draft Genome Sequence of the Field Isolate Brucella melitensis Strain Bm IND1 from India. PMID:24874680
mzGroupAnalyzer--predicting pathways and novel chemical structures from untargeted high-throughput metabolomics data. PMID:24846183
Analysis of insecticide resistance-related genes of the Carmine spider mite Tetranychus cinnabarinus based on a de novo assembled transcriptome. PMID:24830288
Genomic profile analysis of diffuse-type gastric cancers. PMID:24690483
Integrated LC-MS/MS system for plant metabolomics. PMID:24688692
BambooGDB: a bamboo genome database with functional annotation and an analysis platform. PMID:24602877
Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages. PMID:24564501
Analysis of schizophrenia and hepatocellular carcinoma genetic network with corresponding modularity and pathways: novel insights to the immune system. PMID:24564241
Whole-genome pathway analysis on 132,497 individuals identifies novel gene-sets associated with body mass index. PMID:24497910
Identifying and mapping cell-type-specific chromatin programming of gene expression. PMID:24469817
Identification of differently expressed genes and small molecule drugs for Tetralogy of Fallot by bioinformatics strategy. PMID:24463614
Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. PMID:24386196
Gene-gene interaction network analysis of ovarian cancer using TCGA data. PMID:24314048
Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks. PMID:24307629
Transcript expression patterns illuminate the mechanistic background of hormesis in caenorhabditis elegans maupas. PMID:24298231
Wnt signaling in triple negative breast cancer is associated with metastasis. PMID:24209998
Target Gene and Function Prediction of Differentially Expressed MicroRNAs in Lactating Mammary Glands of Dairy Goats. PMID:24195063
Inference of gene-phenotype associations via protein-protein interaction and orthology. PMID:24194887
Statistical Analysis of Patient-Specific Pathway Activities via Mixed Models. PMID:24124644
Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis. PMID:24098140
Identification of biomarkers for hepatocellular carcinoma using network-based bioinformatics methods. PMID:24083576
Phosphoproteomic analyses reveal signaling pathways that facilitate lytic gammaherpesvirus replication. PMID:24068923
Network-based approaches in drug discovery and early development. PMID:24025802
The human urine metabolome. PMID:24023812
A regularized Hotelling's T2 test for pathway analysis in proteomic studies. PMID:23997374
Systematic review of genome-wide gene expression studies of bipolar disorder. PMID:23945090
Application of an improved proteomics method for abundant protein cleanup: molecular and genomic mechanisms study in plant defense. PMID:23943779
Differential gene expression profiles of PPP2R5C-siRNA-treated malignant T cells. PMID:23941244
Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson's patients leukocytes. PMID:23865419
Experimental evolution of protein-protein interaction networks. PMID:23849056
Pivotal regulatory network and genes in osteosarcoma. PMID:23847684
FuncISH: learning a functional representation of neural ISH images. PMID:23813005
eFG: an electronic resource for Fusarium graminearum. PMID:23798489
Identification of lung-cancer-related genes with the shortest path approach in a protein-protein interaction network. PMID:23762832
Differential network analysis for the identification of condition-specific pathway activity and regulation. PMID:23749957
The challenge of constructing, classifying, and representing metabolic pathways. PMID:23746312
HGPGD: the human gene population genetic difference database. PMID:23717556
Textrous!: extracting semantic textual meaning from gene sets. PMID:23646135
Gene expression analysis in cardiac tissues from infants identifies candidate agents for Tetralogy of Fallot. PMID:23563574
Analysis of crucial molecules involved in herniated discs and degenerative disc disease. PMID:23525320
Candidate agents for papillary thyroid cancer identified by gene expression analysis. PMID:23519608
Cell-type-specific predictive network yields novel insights into mouse embryonic stem cell self-renewal and cell fate. PMID:23468881
Microarray gene expression profiling analysis combined with bioinformatics in multiple sclerosis. PMID:23456643
Identification of drug candidate for osteoporosis by computational bioinformatics analysis of gene expression profile. PMID:23448234
Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease. PMID:23413375
Intricate interplay between astrocytes and motor neurons in ALS. PMID:23388633
Integrated lipidomics and transcriptomic analysis of peripheral blood reveals significantly enriched pathways in type 2 diabetes mellitus. PMID:23369247
Bioinformatics analysis reveals potential candidate drugs for HCC. PMID:23341104
Allele-specific behavior of molecular networks: understanding small-molecule drug response in yeast. PMID:23308257
Gene expression profiling combined with bioinformatics analysis identify biomarkers for Parkinson disease. PMID:23284986
Docking studies and network analyses reveal capacity of compounds from Kandelia rheedii to strengthen cellular immunity by interacting with host proteins during tuberculosis infection. PMID:23275699
Nuclear LEF1/TCF4 correlate with poor prognosis but not with nuclear β-catenin in cerebral metastasis of lung adenocarcinomas. PMID:23224985
Microarray-based analysis of gene regulation by transcription factors and microRNAs in glioma. PMID:23212403
Identification of pharmacological targets in amyotrophic lateral sclerosis through genomic analysis of deregulated genes and pathways. PMID:23204922
Karyotype and DNA-Methylation Responses in Myelodysplastic Syndromes following Treatment with Traditional Chinese Formula Containing Arsenic. PMID:23118798
A sub-pathway based method to identify candidate agents for Ankylosing Spondylitis. PMID:23090024
Identification of significant pathways in gastric cancer based on protein-protein interaction networks and cluster analysis. PMID:23055812
Bioinformatics analysis reveals potential candidate drugs for different subtypes of glioma. PMID:23053832
Prioritising risk pathways of complex human diseases based on functional profiling. PMID:23047740
The genetics of alcohol dependence: advancing towards systems-based approaches. PMID:22854292
Mgat1-dependent N-glycosylation of membrane components primes Drosophila melanogaster blood cells for the cellular encapsulation response. PMID:22829770
Patient-controlled encrypted genomic data: an approach to advance clinical genomics. PMID:22818218
Let-7b regulates the expression of the growth hormone receptor gene in deletion-type dwarf chickens. PMID:22781587
Taking the next step: building an Arabidopsis information portal. PMID:22751211
Effect of chemical mutagens and carcinogens on gene expression profiles in human TK6 cells. PMID:22723965
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. PMID:22720753
Dynamic network of transcription and pathway crosstalk to reveal molecular mechanism of MGd-treated human lung cancer cells. PMID:22693540
Analyzing large biological datasets with association networks. PMID:22638576
Nutritional metabolomics: progress in addressing complexity in diet and health. PMID:22540256
The Nematode Caenorhabditis elegans, Stress and Aging: Identifying the Complex Interplay of Genetic Pathways Following the Treatment with Humic Substances. PMID:22529848
Genome expression profile analysis of the immature maize embryo during dedifferentiation. PMID:22448216
Aggregating data for computational toxicology applications: The U.S. Environmental Protection Agency (EPA) Aggregated Computational Toxicology Resource (ACToR) System. PMID:22408426
High-performance metabolic profiling of plasma from seven mammalian species for simultaneous environmental chemical surveillance and bioeffect monitoring. PMID:22387982
Tracing lifestyle adaptation in prokaryotic genomes. PMID:22363326
A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi. PMID:22272365
EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data. PMID:22267905
The fur transcription regulator and fur-regulated genes in Clostridium botulinum A ATCC 3502. PMID:22203788
Computational identification of protein-protein interactions in rice based on the predicted rice interactome network. PMID:22196356
Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. PMID:22185641
Identifying highly conserved and highly differentiated gene ontology categories in human populations. PMID:22140477
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis. PMID:22126435
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. PMID:22120661
Evolution of multidrug resistance during Staphylococcus aureus infection involves mutation of the essential two component regulator WalKR. PMID:22102812
dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. PMID:22096234
Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria. PMID:22078363
The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression. PMID:22022424
Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. PMID:22004680
Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk. PMID:21827660
Integrated bio-entity network: a system for biological knowledge discovery. PMID:21738677
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
An integrated ChIP-seq analysis platform with customizable workflows. PMID:21736739
Immunogenicity of autoantigens. PMID:21726451
Markov models of amino acid substitution to study proteins with intrinsically disordered regions. PMID:21647374
Computational integration of homolog and pathway gene module expression reveals general stemness signatures. PMID:21559491
Signaling gateway molecule pages--a data model perspective. PMID:21505029
Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis. PMID:21484153
The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon. PMID:21356104
Protein function prediction: towards integration of similarity metrics. PMID:21353529
Integrated metabolome and transcriptome analysis of the NCI60 dataset. PMID:21342567
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). PMID:21051347
FragmentStore--a comprehensive database of fragments linking metabolites, toxic molecules and drugs. PMID:20965964
Multi-species integrative biclustering. PMID:20920250
ArrayTrack: a free FDA bioinformatics tool to support emerging biomedical research--an update. PMID:20846933
Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana. PMID:20678208
Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling. PMID:20667078
The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. PMID:20624719
Modular composition predicts kinase/substrate interactions. PMID:20579376
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. PMID:20565884
Insights into colon cancer etiology via a regularized approach to gene set analysis of GWAS data. PMID:20560206
Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test. PMID:20534172
Heterozygosity for Pten promotes tumorigenesis in a mouse model of medulloblastoma. PMID:20520772
Signal processing for metagenomics: extracting information from the soup. PMID:20436876
A dictionary on microRNAs and their putative target pathways. PMID:20299343
Postmenopausal estrogen and progestin effects on the serum proteome. PMID:20034393
Functional screening identifies CRLF2 in precursor B-cell acute lymphoblastic leukemia. PMID:20018760
Identification of targeted analyte clusters for studies of schizophrenia. PMID:20007949
Use of Drosophila deoxynucleoside kinase to study mechanism of toxicity and mutagenicity of deoxycytidine analogs in Escherichia coli. PMID:20005183
A genome-wide survey for host response of silkworm, Bombyx mori during pathogen Bacillus bombyseptieus infection. PMID:19956592
Reconstructing ancestral gene content by coevolution. PMID:19948819
An expression database for roots of the model legume Medicago truncatula under salt stress. PMID:19906315
A methodology for the analysis of differential coexpression across the human lifespan. PMID:19772654
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. PMID:19713416
Housekeeping genes in prostate tumorigenesis. PMID:19551858
Differentiation of a highly tumorigenic basal cell compartment in urothelial carcinoma. PMID:19544456
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. PMID:19509312
Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases. PMID:19494114
Database resources in metabolomics: an overview. PMID:19418229
Gene expression profiling to characterize sediment toxicity--a pilot study using Caenorhabditis elegans whole genome microarrays. PMID:19366437
A network view of disease and compound screening. PMID:19337271
Recent developments in parameter estimation and structure identification of biochemical and genomic systems. PMID:19327372
OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes. PMID:19117520
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. PMID:19099609
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. PMID:18984613
Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. PMID:18783608
Defining human diabetic nephropathy on the molecular level: integration of transcriptomic profiles with biological knowledge. PMID:18704688
Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage. PMID:18652504
Using multiple ontologies to integrate complex biological data. PMID:18629202
Seeded Bayesian Networks: constructing genetic networks from microarray data. PMID:18601736
Bioinformatic tools for inferring functional information from plant microarray data: tools for the first steps. PMID:18528524
eQED: an efficient method for interpreting eQTL associations using protein networks. PMID:18319721
High-precision high-coverage functional inference from integrated data sources. PMID:18298847
AphanoDB: a genomic resource for Aphanomyces pathogens. PMID:18096036
Biomarkers for neuroAIDS: the widening scope of metabolomics. PMID:18040828
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. PMID:18021453
Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways. PMID:17537826
Advancing translational research with the Semantic Web. PMID:17493285
METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. PMID:17408512
C-type natriuretic peptide regulates endochondral bone growth through p38 MAP kinase-dependent and -independent pathways. PMID:17374144
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. PMID:17142238
Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways. PMID:17044931
Identification of MglA-regulated genes reveals novel virulence factors in Francisella tularensis. PMID:17000729
Cataloging the relationships between proteins: a review of interaction databases. PMID:16943573
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. PMID:16901339
Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. PMID:16751541
A systems view of haloarchaeal strategies to withstand stress from transition metals. PMID:16751342
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. PMID:16686963
Microarray technology in obstetrics and gynecology: a guide for clinicians. PMID:16615920
The Gaggle: an open-source software system for integrating bioinformatics software and data sources. PMID:16569235
Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine. PMID:16424108
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. PMID:16026603
The MicrobesOnline Web site for comparative genomics. PMID:15998914
The bioinformatics resource for oral pathogens. PMID:15980574
PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. PMID:15869710
The Rat Genome Database (RGD): developments towards a phenome database. PMID:15608243
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. PMID:15520287
Coexpression of neighboring genes in the genome of Arabidopsis thaliana. PMID:15173112
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. PMID:15140832
Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. PMID:14681448
ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. PMID:14630514 -
DBGET/LinkDB: an integrated database retrieval system
PubMed citations: 22.
22 articles citing: DBGET/LinkDB: an integrated database retrieval system
Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information. PMID:33740463
Experimental study of hypoxia-induced changes in gene expression in an Asian pika, Ochotona dauurica. PMID:33044983
dBMHCC: A comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers. PMID:32497121
Retained Acetylated Histone Four in Bull Sperm Associated With Fertility. PMID:31417913
Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura). PMID:26994086
Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges. PMID:25632107
LAILAPS: the plant science search engine. PMID:25480116
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model. PMID:24829452
Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis. PMID:23855669
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*. PMID:20727200
CyanoBase: the cyanobacteria genome database update 2010. PMID:19880388
AAindex: amino acid index database, progress report 2008. PMID:17998252
GeneSeer: a sage for gene names and genomic resources. PMID:16176584
Atlas - a data warehouse for integrative bioinformatics. PMID:15723693
Bioinformatics data distribution and integration via Web Services and XML. PMID:15629058
LIGAND: database of chemical compounds and reactions in biological pathways. PMID:11752349
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. PMID:11752271
The KEGG databases at GenomeNet. PMID:11752249
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). PMID:11125096
LIGAND: chemical database of enzyme reactions. PMID:10592281
AAindex: amino acid index database. PMID:10592278
KEGG: kyoto encyclopedia of genes and genomes. PMID:10592173
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molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
sequence analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:58.453387
Tags
More detailed information about this field from each metasource.
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:58.453387
sequence analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:58.453387
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:58.453387
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:58.453387
molecular interactions, pathways and networks sequence analysis protein interaction proteomics
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