KEGG Mark-up Language
Names
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KEGG Mark-up Language
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
KGML
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
KEGG Mark-up Language
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
KGML
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
KEGG Mark-up Language
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
KGML
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The KEGG Markup Language (KGML) is an exchange format of the KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG) format. KGML enables automatic drawing of KEGG pathways and provides facilities for computational analysis and modeling of gene/protein networks and chemical networks.
Description
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The KEGG Markup Language (KGML) is an exchange format of the KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG) format. KGML enables automatic drawing of KEGG pathways and provides facilities for computational analysis and modeling of gene/protein networks and chemical networks.
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://www.genome.jp/kegg/xml/Webpage
More detailed information about this field from each metasource.
http://www.genome.jp/kegg/xml/
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
PMID: 21700675
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
PMID: 21700675
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
PubMed citations: 26.
26 articles citing: KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
Long noncoding RNA GSEC promotes neutrophil inflammatory activation by supporting PFKFB3-involved glycolytic metabolism in sepsis. PMID:34907156
KEGG2Net: Deducing gene interaction networks and acyclic graphs from KEGG pathways. PMID:33880340
Screening and identification of key gene in sepsis development: Evidence from bioinformatics analysis. PMID:32629654
Ubiquitylomes Analysis of the Whole blood in Postmenopausal Osteoporosis Patients and healthy Postmenopausal Women. PMID:31762184
Closing the gap between formats for storing layout information in systems biology. PMID:31273380
PathMe: merging and exploring mechanistic pathway knowledge. PMID:31092193
Harmonizing semantic annotations for computational models in biology. PMID:30462164
Predicted molecular targets and pathways for germacrone, curdione, and furanodiene in the treatment of breast cancer using a bioinformatics approach. PMID:29138518
Path2enet: generation of human pathway-derived networks in an expression specific context. PMID:27801297
Enrichment of Fusobacteria in Sea Surface Oil Slicks from the Deepwater Horizon Oil Spill. PMID:27681918
Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data. PMID:27595107
KENeV: A web-application for the automated reconstruction and visualization of the enriched metabolic and signaling super-pathways deriving from genomic experiments. PMID:26925206
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. PMID:26452770
JSBML 1.0: providing a smorgasbord of options to encode systems biology models. PMID:26079347
Improving collaboration by standardization efforts in systems biology. PMID:25538939
KEGGscape: a Cytoscape app for pathway data integration. PMID:25177485
KEGGViewer, a BioJS component to visualize KEGG Pathways. PMID:24715980
Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein. PMID:24195591
Path2Models: large-scale generation of computational models from biochemical pathway maps. PMID:24180668
Translation of SBGN maps: Process Description to Activity Flow. PMID:24176088
Colorectal cancer through simulation and experiment. PMID:24046975
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. PMID:23953132
Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions. PMID:23708492
Precise generation of systems biology models from KEGG pathways. PMID:23433509
InCroMAP: integrated analysis of cross-platform microarray and pathway data. PMID:23257199
Computational tools for metabolic engineering. PMID:22629572
Tags:
Tags
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enzymatic reaction
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
mathematical model
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
molecular entity
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
enzymatic reaction
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
mathematical model
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
molecular entity
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: KGML; KEGG Mark-up Language; DOI: https://doi.org/10.25504/FAIRsharing.h6c48k; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
enzymatic reaction mathematical model molecular entity network model pathway model
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