FlowRepository
FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. Data are generally associated with peer reviewed manuscripts.
Description
More detailed information about this field from each metasource.
FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. Data are generally associated with peer reviewed manuscripts.
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
FlowRepository is a web-based application accessible from a web browser that serves as an online database of flow cytometry experiments where users can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field. FlowRepository is funded by the International Society for Advancement of Cytometry (ISAC) and powered by the Cytobank engine specifically extended for the purposes of this repository. FlowRepository has been developed by forking and extending Cytobank in 2011.
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
Webpage:
http://www.flowrepository.orgWebpage
More detailed information about this field from each metasource.
http://www.flowrepository.org
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://flowrepository.org/
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
Licence:
Name: FLOW Repository Terms of UseLicence name
More detailed information about this field from each metasource.
FLOW Repository Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
other
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
Licence URL
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http://flowrepository.org/terms_of_service
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications
PMID: 22887982
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) compliant manuscript using the International Society for Advancement of Cytometry (ISAC) FCS file repository (FlowRepository.org)
PMID: 22752950
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications
PMID: 22887982
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) compliant manuscript using the International Society for Advancement of Cytometry (ISAC) FCS file repository (FlowRepository.org)
PMID: 22752950
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
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FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications
PubMed citations: 60.
60 articles citing: FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications
Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages. PMID:35619054
CytofIn enables integrated analysis of public mass cytometry datasets using generalized anchors. PMID:35177627
Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume. PMID:35140689
Application of Machine Learning for Cytometry Data. PMID:35046945
New interpretable machine-learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy. PMID:34950900
Data-driven comparison of multiple high-dimensional single-cell expression profiles. PMID:34719682
Alteration of the immune environment in bone marrow from children with recurrent B cell precursor acute lymphoblastic leukemia. PMID:34716967
A standardized genome architecture for bacterial synthetic biology (SEGA). PMID:34620865
ImmuCellDB: An Indicative Database of Immune Cell Composition From Different Tissues and Disease Conditions in Mouse and Human. PMID:34456903
Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy. PMID:34350827
Opportunities and Challenges in Democratizing Immunology Datasets. PMID:33936065
ImmunoCluster provides a computational framework for the nonspecialist to profile high-dimensional cytometry data. PMID:33929322
Robust hepatitis B vaccine-reactive T cell responses in failed humoral immunity. PMID:33898628
K-means quantization for a web-based open-source flow cytometry analysis platform. PMID:33762594
CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data. PMID:33752602
Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells. PMID:33684219
Computational Analysis of Microbial Flow Cytometry Data. PMID:33468704
Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK-driven lymphomagenesis. PMID:33310759
Landscape of coordinated immune responses to H1N1 challenge in humans. PMID:33044226
Programmable cross-ribosome-binding sites to fine-tune the dynamic range of transcription factor-based biosensor. PMID:32976557
Salmonella enterica serovar Typhimurium inhibits the innate immune response and promotes apoptosis in a ribosomal/TRP53-dependent manner in swine neutrophils. PMID:32854785
Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy. PMID:32766581
Robust FCS Parsing: Exploring 211,359 Public Files. PMID:32633075
Marked T cell activation, senescence, exhaustion and skewing towards TH17 in patients with COVID-19 pneumonia. PMID:32632085
A transcriptional landscape of 28 porcine tissues obtained by super deepSAGE sequencing. PMID:32171242
MIFlowCyt-EV: a framework for standardized reporting of extracellular vesicle flow cytometry experiments. PMID:32128070
Rigorous characterization of urinary extracellular vesicles (uEVs) in the low centrifugation pellet - a neglected source for uEVs. PMID:32111925
Variant Signal Peptides of Vaccine Antigen, FHbp, Impair Processing Affecting Surface Localization and Antibody-Mediated Killing in Most Meningococcal Isolates. PMID:31921030
Immune monitoring using mass cytometry and related high-dimensional imaging approaches. PMID:31892734
HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats. PMID:31857895
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). PMID:31633216
Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry. PMID:31506260
Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report. PMID:31368812
Microbial life cycles link global modularity in regulation to mosaic evolution. PMID:31332330
Essential guidelines for computational method benchmarking. PMID:31221194
Replication Study: Wnt activity defines colon cancer stem cells and is regulated by the microenvironment. PMID:31215867
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering. PMID:31098416
The female-biased factor VGLL3 drives cutaneous and systemic autoimmunity. PMID:30996136
Location-dependent maintenance of intrinsic susceptibility to mTORC1-driven tumorigenesis. PMID:30910807
Replication Study: The microRNA miR-34a inhibits prostate cancer stem cells and metastasis by directly repressing CD44. PMID:30860027
Single Cell Based Phosphorylation Profiling Identifies Alterations in Toll-Like Receptor 7 and 9 Signaling in Patients With Primary Sjögren's Syndrome. PMID:30846988
The Computational article format: Software as a research output. PMID:30551258
Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations. PMID:30450167
CytoBinning: Immunological insights from multi-dimensional data. PMID:30379838
Methodology for evaluating and comparing flow cytometers: A multisite study of 23 instruments. PMID:30244531
A Method for the Interpretation of Flow Cytometry Data Using Genetic Algorithms. PMID:29770255
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. PMID:29688354
Aberrant cell signalling in PBMCs upon IFN-α stimulation in primary Sjögren's syndrome patients associates with type I interferon signature. PMID:29604049
Guidelines for the use of flow cytometry and cell sorting in immunological studies. PMID:29023707
Replication Study: Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. PMID:28653617
Flow Cytometric Single-Cell Identification of Populations in Synthetic Bacterial Communities. PMID:28122063
Systematic Analysis of Cell-to-Cell Expression Variation of T Lymphocytes in a Human Cohort Identifies Aging and Genetic Associations. PMID:27851916
Single and multi-subject clustering of flow cytometry data for cell-type identification and anomaly detection. PMID:27510222
Systems immune monitoring in cancer therapy. PMID:27155446
flowClean: Automated identification and removal of fluorescence anomalies in flow cytometry data. PMID:26990501
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. PMID:26447924
Competitive SWIFT cluster templates enhance detection of aging changes. PMID:26441030
Combinatorial synthesis and screening of cancer cell-specific nanomedicines targeted via phage fusion proteins. PMID:26157433
Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440. PMID:25401072
Flow cytometry bioinformatics. PMID:24363631 -
Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) compliant manuscript using the International Society for Advancement of Cytometry (ISAC) FCS file repository (FlowRepository.org)
PubMed citations: 11.
11 articles citing: Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) compliant manuscript using the International Society for Advancement of Cytometry (ISAC) FCS file repository (FlowRepository.org)
A T cell resilience model associated with response to immunotherapy in multiple tumor types. PMID:35501486
CytofIn enables integrated analysis of public mass cytometry datasets using generalized anchors. PMID:35177627
The Evolution of Single-Cell Analysis and Utility in Drug Development. PMID:34389904
Data processing workflow for large-scale immune monitoring studies by mass cytometry. PMID:34141137
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). PMID:31633216
A Method for the Interpretation of Flow Cytometry Data Using Genetic Algorithms. PMID:29770255
High throughput automated analysis of big flow cytometry data. PMID:29287915
Guidelines for the use of flow cytometry and cell sorting in immunological studies. PMID:29023707
Preparing Viable Single Cells from Human Tissue and Tumors for Cytomic Analysis. PMID:28369679
Real-time monitoring of the sugar sensing in Saccharomyces cerevisiae indicates endogenous mechanisms for xylose signaling. PMID:27776527
Flow cytometry bioinformatics. PMID:24363631
Tags:
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cell
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular assay
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
flow cytometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
fcm
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
omip
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
cytometry
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
life sciences
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
statistics
metasource: re3data.org
version: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
cell
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular assay
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
flow cytometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: FlowRepository; FlowRepository; DOI: https://doi.org/10.25504/FAIRsharing.veg2d6; Last edited: July 2, 2019, 11:29 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
fcm
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
omip
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
cytometry
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
life sciences
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
statistics
metasource: re3data.orgversion: re3data.org: FlowRepository; editing status 2021-09-02; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3R90Q last accessed: 2022-11-04
cell cellular assay flow cytometry assay fcm omip bioinformatics cytometry life sciences statistics
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