R3WW2K last accessed: 2022-11-04

NeuroMorpho.org
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:43.865289

neuromorpho.org
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:43.865289

Other names: NeuroMorpho, NeuroMorpho.org, neuromorpho.org

This source may no longer be available. No known URL could be resolved successfully.

NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community.

Webpage:

http://neuromorpho.org/

Licence:

Name: NeuroMorpho Terms of Use
URL: http://neuromorpho.org/useterm.jsp

Publications: (8)

Publications
More detailed information about this field from each metasource.

Mobilizing the base of neuroscience data: the case of neuronal morphologies
PMID: 16552417
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Neuronal morphology goes digital: a research hub for cellular and system neuroscience
PMID: 23522039
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Digital reconstructions of neuronal morphology: three decades of research trends
PMID: 22536169
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF
PMID: 18949582
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology
PMID: 24972604
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

The importance of metadata to assess information content in digital reconstructions of neuronal morphology
PMID: 25653123
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Doubling up on the fly: NeuroMorpho.Org Meets Big Data
PMID: 25576225
metasource: Fairsharing.org
version: FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Prediction of Neural Diameter From Morphology to Enable Accurate Simulation
PMID: 34149388
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:43.865289

Mobilizing the base of neuroscience data: the case of neuronal morphologies PubMed citations: 121.

121 articles citing: Mobilizing the base of neuroscience data: the case of neuronal morphologies

nAdder: A scale-space approach for the 3D analysis of neuronal traces. PMID:35789212
Roles of the Unsaturated Fatty Acid Docosahexaenoic Acid in the Central Nervous System: Molecular and Cellular Insights. PMID:35628201
Modeling Neurons in 3D at the Nanoscale. PMID:35471533
A multilayer-multiplexer network processing scheme based on the dendritic integration in a single neuron. PMID:35434280
Selective Activation of Retinal Ganglion Cell Subtypes Through Targeted Electrical Stimulation Parameters. PMID:35130164
Large-scale neural recordings with single neuron resolution using Neuropixels probes in human cortex. PMID:35102333
Block Phenomena During Electric Micro-Stimulation of Pyramidal Cells and Retinal Ganglion Cells. PMID:34899192
Formin 3 directs dendritic architecture via microtubule regulation and is required for somatosensory nociceptive behavior. PMID:34322714
Color and cellular selectivity of retinal ganglion cell subtypes through frequency modulation of electrical stimulation. PMID:33664347
Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses. PMID:33494860
Highlights from the Era of Open Source Web-Based Tools. PMID:33472826
NeuroBox: Computational Mathematics in Multiscale Neuroscience. PMID:33100898
Responsiveness of Retinal Ganglion Cells Through Frequency Modulation of Electrical Stimulation: A Computational Modeling Study. PMID:33018732
Targeted Stimulation of Retinal Ganglion Cells in Epiretinal Prostheses: A Multiscale Computational Study. PMID:32991284
Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking. PMID:32169170
Neuronal Morphology and Synapse Count in the Nematode Worm. PMID:31695603
TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain. PMID:31375678
ELFENN: A Generalized Platform for Modeling Ephaptic Coupling in Spiking Neuron Models. PMID:31214004
Quantifying How Staining Methods Bias Measurements of Neuron Morphologies. PMID:31191283
Risks of cognitive detriments after low dose heavy ion and proton exposures. PMID:31120359
Precise segmentation of densely interweaving neuron clusters using G-Cut. PMID:30948706
Three-dimensional alteration of neurites in schizophrenia. PMID:30755587
TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology. PMID:30609382
DETRIMENTS IN NEURON MORPHOLOGY FOLLOWING HEAVY ION IRRADIATION: WHAT'S THE TARGET? PMID:30561664
Towards a supervised classification of neocortical interneuron morphologies. PMID:30558530
Cross-Species Evidence of Interplay Between Neural Connectivity at the Micro- and Macroscale of Connectome Organization in Human, Mouse, and Rat Brain. PMID:30479137
An Optimized Structure-Function Design Principle Underlies Efficient Signaling Dynamics in Neurons. PMID:29992977
Spatial registration of neuron morphologies based on maximization of volume overlap. PMID:29669537
Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system. PMID:29636499
Biophysics Model of Heavy-Ion Degradation of Neuron Morphology in Mouse Hippocampal Granular Cell Layer Neurons. PMID:29502499
An open repository for single-cell reconstructions of the brain forest. PMID:29485626
Role of the Axon Initial Segment in the Control of Spontaneous Frequency of Nigral Dopaminergic Neurons In Vivo. PMID:29217687
Revealing the distribution of transmembrane currents along the dendritic tree of a neuron from extracellular recordings. PMID:29148974
Dendritic Cytoskeletal Architecture Is Modulated by Combinatorial Transcriptional Regulation in Drosophila melanogaster. PMID:29025914
Combination Therapy for Multi-Target Manipulation of Secondary Brain Injury Mechanisms. PMID:28847295
Track structure model of microscopic energy deposition by protons and heavy ions in segments of neuronal cell dendrites represented by cylinders or spheres. PMID:28554507
Generating Neuron Geometries for Detailed Three-Dimensional Simulations Using AnaMorph. PMID:28447297
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
Engineering Botulinum Neurotoxin C1 as a Molecular Vehicle for Intra-Neuronal Drug Delivery. PMID:28220863
Micro-connectomics: probing the organization of neuronal networks at the cellular scale. PMID:28148956
Win-win data sharing in neuroscience. PMID:28139675
Transforming Education Research Through Open Video Data Sharing. PMID:28042361
Morphological Neuron Classification Using Machine Learning. PMID:27847467
Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. PMID:27629590
In search of a periodic table of the neurons: Axonal-dendritic circuitry as the organizing principle: Patterns of axons and dendrites within distinct anatomical parcels provide the blueprint for circuit-based neuronal classification. PMID:27516119
Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges. PMID:27313507
Anatomically Detailed and Large-Scale Simulations Studying Synapse Loss and Synchrony Using NeuroBox. PMID:26903818
Data for spatial characterization of AC signal propagation over primary neuron dendrites. PMID:26862580
REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells. PMID:26778971
Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models. PMID:26657024
Foundational dendritic processing that is independent of the cell type-specific structure in model primary neurons. PMID:26463670
Sharing Neuron Data: Carrots, Sticks, and Digital Records. PMID:26447712
Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex. PMID:26318661
Irradiation of Neurons with High-Energy Charged Particles: An In Silico Modeling Approach. PMID:26252394
Quantifying the Number of Discriminable Coincident Dendritic Input Patterns through Dendritic Tree Morphology. PMID:26100354
A Mathematical Model of a Midbrain Dopamine Neuron Identifies Two Slow Variables Likely Responsible for Bursts Evoked by SK Channel Antagonists and Terminated by Depolarization Block. PMID:25852980
Towards the automatic classification of neurons. PMID:25765323
Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PMID:25680098
Excitatory effects of parvalbumin-expressing interneurons maintain hippocampal epileptiform activity via synchronous afterdischarges. PMID:25392490
1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. PMID:25120463
Asymmetry in signal propagation between the soma and dendrites plays a key role in determining dendritic excitability in motoneurons. PMID:25083794
A comparison of manual neuronal reconstruction from biocytin histology or 2-photon imaging: morphometry and computer modeling. PMID:25071470
Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions. PMID:25009472
A software tool for the analysis of neuronal morphology data. PMID:24529393
Atoxic derivative of botulinum neurotoxin A as a prototype molecular vehicle for targeted delivery to the neuronal cytoplasm. PMID:24465585
Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PMID:24454938
Dendritic branch intersections are structurally regulated targets for efficient axonal wiring and synaptic clustering. PMID:24349189
Estimating neuronal connectivity from axonal and dendritic density fields. PMID:24324430
The Filament Editor: an interactive software environment for visualization, proof-editing and analysis of 3D neuron morphology. PMID:24323305
Using Strahler's analysis to reduce up to 200-fold the run time of realistic neuron models. PMID:24121727
Mathematical Models of Blast-Induced TBI: Current Status, Challenges, and Prospects. PMID:23755039
Using diffusion anisotropy to characterize neuronal morphology in gray matter: the orientation distribution of axons and dendrites in the NeuroMorpho.org database. PMID:23675327
Neuronal morphology goes digital: a research hub for cellular and system neuroscience. PMID:23522039
Stereological and ultrastructural quantification of the afferent synaptome of individual neurons. PMID:23479177
Cellular effects of acute direct current stimulation: somatic and synaptic terminal effects. PMID:23478132
Self-referential forces are sufficient to explain different dendritic morphologies. PMID:23386828
New insights into the classification and nomenclature of cortical GABAergic interneurons. PMID:23385869
Employing NeuGen 2.0 to automatically generate realistic morphologies of hippocampal neurons and neural networks in 3D. PMID:23111491
The retrograde frequency response of passive dendritic trees constrains the nonlinear firing behaviour of a reduced neuron model. PMID:22916290
A scaling law derived from optimal dendritic wiring. PMID:22715290
Neuromantic - from semi-manual to semi-automatic reconstruction of neuron morphology. PMID:22438842
Structural correlates of heterogeneous in vivo activity of midbrain dopaminergic neurons. PMID:22327472
Python as a federation tool for GENESIS 3.0. PMID:22276101
On the estimation of population-specific synaptic currents from laminar multielectrode recordings. PMID:22203801
Optimal experimental design for sampling voltage on dendritic trees in the low-SNR regime. PMID:21861199
Challenges and opportunities in mining neuroscience data. PMID:21311009
Axonal morphometry of hippocampal pyramidal neurons semi-automatically reconstructed after in vivo labeling in different CA3 locations. PMID:21128083
Morphologically accurate reduced order modeling of spiking neurons. PMID:20300957
Regulation of firing frequency in a computational model of a midbrain dopaminergic neuron. PMID:20217204
Complexity and anisotropy in host morphology make populations less susceptible to epidemic outbreaks. PMID:20075039
Feed-forward inhibition as a buffer of the neuronal input-output relation. PMID:19815518
Cooperative synapse formation in the neocortex. PMID:19805321
Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors. PMID:19622738
Quantitative morphometry of electrophysiologically identified CA3b interneurons reveals robust local geometry and distinct cell classes. PMID:19496174
Derivation of cable parameters for a reduced model that retains asymmetric voltage attenuation of reconstructed spinal motor neuron dendrites. PMID:19387812
Spike-timing-dependent synaptic plasticity and synaptic democracy in dendrites. PMID:19357339
The membrane response of hippocampal CA3b pyramidal neurons near rest: Heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. PMID:19232379
Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. PMID:19176614
Low-dimensional, morphologically accurate models of subthreshold membrane potential. PMID:19172386
Detection of the optimal neuron traces in confocal microscopy images. PMID:19059434
Endogenous polyamines regulate cortical neuronal excitability by blocking voltage-gated Na+ channels. PMID:19020082
NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF. PMID:18949582
Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets. PMID:18855673
Non-parametric algorithmic generation of neuronal morphologies. PMID:18797828
Quantifying neuronal size: summing up trees and splitting the branch difference. PMID:18771743
Bioimage informatics: a new area of engineering biology. PMID:18603566
Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex. PMID:18568015
A comparative computer simulation of dendritic morphology. PMID:18483611
L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies. PMID:18451794
Effects of synaptic synchrony on the neuronal input-output relationship. PMID:18254692
Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. PMID:18189311
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. PMID:18054501
Improving the analysis, storage and sharing of neuroimaging data using relational databases and distributed computing. PMID:17964812
Successes and rewards in sharing digital reconstructions of neuronal morphology. PMID:17917126
Value added by data sharing: long-term potentiation of neuroscience research. A commentary on the 2007 SfN Satellite Symposium on data sharing. PMID:17917124
MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification. PMID:17873371
NeuroMorpho.Org: a central resource for neuronal morphologies. PMID:17728438
The continuing case for the Renshaw cell. PMID:17640932
neuroConstruct: a tool for modeling networks of neurons in 3D space. PMID:17442244
Brain maps and connectivity representation. PMID:17142840
The ups and downs of neuroscience shares. PMID:16943627
Neuronal morphology goes digital: a research hub for cellular and system neuroscience PubMed citations: 102.

102 articles citing: Neuronal morphology goes digital: a research hub for cellular and system neuroscience

A report on digitised neuronal tracing method to study neurons in their entirety. PMID:35592463
Brain-wide projection reconstruction of single functionally defined neurons. PMID:35318336
RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations. PMID:35311003
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. PMID:35182359
PyNeval: A Python Toolbox for Evaluating Neuron Reconstruction Performance. PMID:35153709
Spindle-Shaped Neurons in the Human Posteromedial (Precuneus) Cortex. PMID:35087390
Benchmarking of tools for axon length measurement in individually-labeled projection neurons. PMID:34879058
Classifying the tracing difficulty of 3D neuron image blocks based on deep learning. PMID:34739611
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling. PMID:34601704
Automated Neuron Tracing Using Content-Aware Adaptive Voxel Scooping on CNN Predicted Probability Map. PMID:34497493
Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry. PMID:34456702
Microglial Metamorphosis in Three Dimensions in Virus Limbic Encephalitis: An Unbiased Pictorial Representation Based on a Stereological Sampling Approach of Surveillant and Reactive Microglia. PMID:34439628
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons. PMID:34342808
Transduction catalysis: Doxorubicin amplifies rAAV-mediated gene expression in the cortex of higher-order vertebrates. PMID:34195565
Glutamatergic Neurons Differentiated from Embryonic Stem Cells: An Investigation of Differentiation and Associated Diseases. PMID:33925600
Analysis of reactive astrogliosis in mouse brain using in situ hybridization combined with immunohistochemistry. PMID:33718893
Correction of topological errors in automated traces of neurites. PMID:33692606
Identification of Neuronal Polarity by Node-Based Machine Learning. PMID:33666823
BCNNM: A Framework for in silico Neural Tissue Development Modeling. PMID:33551782
Single-neuron dynamical effects of dendritic pruning implicated in aging and neurodegeneration: towards a measure of neuronal reserve. PMID:33446683
A combinatorial method to visualize the neuronal network in the mouse spinal cord: combination of a modified Golgi-Cox method and synchrotron radiation micro-computed tomography. PMID:33398435
Spatially resolved dendritic integration: towards a functional classification of neurons. PMID:33282551
Retrieving similar substructures on 3D neuron reconstructions. PMID:33146802
Multicolor sparse viral labeling and 3D digital tracing of enteric plexus in mouse proximal colon using a novel adeno-associated virus capsid. PMID:33094876
Weakly Supervised Learning of 3D Deep Network for Neuron Reconstruction. PMID:32848636
Dendritic Spines: Mediators of Cognitive Resilience in Aging and Alzheimer's Disease. PMID:32812494
Dendritic and Spine Heterogeneity of von Economo Neurons in the Human Cingulate Cortex. PMID:32733229
TraceMontage: A method for merging multiple independent neuronal traces. PMID:31874186
Challenges of Processing and Analyzing Big Data in Mesoscopic Whole-brain Imaging. PMID:31805368
ShuTu: Open-Source Software for Efficient and Accurate Reconstruction of Dendritic Morphology. PMID:31736735
Pinpointing Morphology and Projection of Excitatory Neurons in Mouse Visual Cortex. PMID:31555081
Brain-Wide Shape Reconstruction of a Traced Neuron Using the Convex Image Segmentation Method. PMID:31396858
An influenza-derived membrane tension-modulating peptide regulates cell movement and morphology via actin remodeling. PMID:31263787
Quantifying How Staining Methods Bias Measurements of Neuron Morphologies. PMID:31191283
Methamphetamine-induced apoptosis in glial cells examined under marker-free imaging modalities. PMID:31025559
Precise segmentation of densely interweaving neuron clusters using G-Cut. PMID:30948706
Generative models and abstractions for large-scale neuroanatomy datasets. PMID:30878806
An active texture-based digital atlas enables automated mapping of structures and markers across brains. PMID:30858600
Optimization of Traced Neuron Skeleton Using Lasso-Based Model. PMID:30846931
Content-Aware Enhancement of Images With Filamentous Structures. PMID:30716037
Multispectral tracing in densely labeled mouse brain with nTracer. PMID:30715234
A Single-Cell Level and Connectome-Derived Computational Model of the Drosophila Brain. PMID:30687056
Identifying Weak Signals in Inhomogeneous Neuronal Images for Large-Scale Tracing of Sparsely Distributed Neurites. PMID:30635864
Towards a supervised classification of neocortical interneuron morphologies. PMID:30558530
Computing neurite outgrowth and arborization in superior cervical ganglion neurons. PMID:30529562
FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree. PMID:30039210
Mining Big Neuron Morphological Data. PMID:30034462
Morphological Neuron Classification Based on Dendritic Tree Hierarchy. PMID:30008070
Image-Based Profiling of Synaptic Connectivity in Primary Neuronal Cell Culture. PMID:29997468
NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. PMID:29949998
Automated sorting of neuronal trees in fluorescent images of neuronal networks using NeuroTreeTracer. PMID:29691458
Spatial registration of neuron morphologies based on maximization of volume overlap. PMID:29669537
An open repository for single-cell reconstructions of the brain forest. PMID:29485626
Design and implementation of multi-signal and time-varying neural reconstructions. PMID:29360104
Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction. PMID:29344781
Investigating Methodological Differences in the Assessment of Dendritic Morphology of Basolateral Amygdala Principal Neurons-A Comparison of Golgi-Cox and Neurobiotin Electroporation Techniques. PMID:29257086
Computer assisted detection of axonal bouton structural plasticity in in vivo time-lapse images. PMID:29058678
Dendritic Cytoskeletal Architecture Is Modulated by Combinatorial Transcriptional Regulation in Drosophila melanogaster. PMID:29025914
Morphology of Dbx1 respiratory neurons in the preBötzinger complex and reticular formation of neonatal mice. PMID:28763053
NeuroTessMesh: A Tool for the Generation and Visualization of Neuron Meshes and Adaptive On-the-Fly Refinement. PMID:28690511
Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. PMID:28671695
Fast assembling of neuron fragments in serial 3D sections. PMID:28365869
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
Win-win data sharing in neuroscience. PMID:28139675
SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images. PMID:27928656
Toward Whole-Body Connectomics. PMID:27911739
Individual Neurons Confined to Distinct Antennal-Lobe Tracts in the Heliothine Moth: Morphological Characteristics and Global Projection Patterns. PMID:27822181
SmartTracing: self-learning-based Neuron reconstruction. PMID:27747506
Employing an open-source tool to assess astrocyte tridimensional structure. PMID:27696155
Computer Simulations Support a Morphological Contribution to BDNF Enhancement of Action Potential Generation. PMID:27683544
Structural and functional plasticity of dendritic spines - root or result of behavior? PMID:27561549
In search of a periodic table of the neurons: Axonal-dendritic circuitry as the organizing principle: Patterns of axons and dendrites within distinct anatomical parcels provide the blueprint for circuit-based neuronal classification. PMID:27516119
Automated Neuron Tracing Methods: An Updated Account. PMID:27447185
NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases. PMID:27373836
Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking. PMID:27184384
Real-time high dynamic range laser scanning microscopy. PMID:27032979
REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells. PMID:26778971
Dbx1 precursor cells are a source of inspiratory XII premotoneurons. PMID:26687006
Plasmon resonance and the imaging of metal-impregnated neurons with the laser scanning confocal microscope. PMID:26670545
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. PMID:26492141
Sharing Neuron Data: Carrots, Sticks, and Digital Records. PMID:26447712
BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images. PMID:26182412
Topological characterization of neuronal arbor morphology via sequence representation: II--global alignment. PMID:26141505
Visible rodent brain-wide networks at single-neuron resolution. PMID:26074784
From DIADEM to BigNeuron. PMID:25920534
Exercises in Anatomy, Connectivity, and Morphology using Neuromorpho.org and the Allen Brain Atlas. PMID:25838808
Towards the automatic classification of neurons. PMID:25765323
3D structure tensor analysis of light microscopy data for validating diffusion MRI. PMID:25665963
The importance of metadata to assess information content in digital reconstructions of neuronal morphology. PMID:25653123
Root system markup language: toward a unified root architecture description language. PMID:25614065
Doubling up on the fly: NeuroMorpho.Org Meets Big Data. PMID:25576225
Statistical analysis and data mining of digital reconstructions of dendritic morphologies. PMID:25538569
Heavy ion and X-ray irradiation alter the cytoskeleton and cytomechanics of cortical neurons. PMID:25206772
Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology. PMID:24972604
Active learning of neuron morphology for accurate automated tracing of neurites. PMID:24904306
NeuroElectro: a window to the world's neuron electrophysiology data. PMID:24808858
An anterograde rabies virus vector for high-resolution large-scale reconstruction of 3D neuron morphology. PMID:24723034
SPIN: a method of skeleton-based polarity identification for neurons. PMID:24692020
HCS-Neurons: identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screening. PMID:24564437
A software tool for the analysis of neuronal morphology data. PMID:24529393
The Filament Editor: an interactive software environment for visualization, proof-editing and analysis of 3D neuron morphology. PMID:24323305
Comparative morphology of dendritic arbors in populations of Purkinje cells in mouse sulcus and apex. PMID:24312734
Digital reconstructions of neuronal morphology: three decades of research trends PubMed citations: 62.

62 articles citing: Digital reconstructions of neuronal morphology: three decades of research trends

PyNeval: A Python Toolbox for Evaluating Neuron Reconstruction Performance. PMID:35153709
Study of Sexual Dimorphism in Metatarsal Bones: Geometric and Inertial Analysis of the Three-Dimensional Reconstructed Models. PMID:34721293
Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder-decoder deep networks. PMID:34604701
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling. PMID:34601704
Digital Reconstruction of the Neuro-Glia-Vascular Architecture. PMID:34387659
NeuroRetriever: Automatic Neuron Segmentation for Connectome Assembly. PMID:34366800
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons. PMID:34342808
Efficient metadata mining of web-accessible neural morphologies. PMID:34022302
Glutamatergic Neurons Differentiated from Embryonic Stem Cells: An Investigation of Differentiation and Associated Diseases. PMID:33925600
Single-neuron dynamical effects of dendritic pruning implicated in aging and neurodegeneration: towards a measure of neuronal reserve. PMID:33446683
Spatially resolved dendritic integration: towards a functional classification of neurons. PMID:33282551
Retrieving similar substructures on 3D neuron reconstructions. PMID:33146802
NeuroBox: Computational Mathematics in Multiscale Neuroscience. PMID:33100898
Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis. PMID:32676020
An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphology. PMID:32219575
Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking. PMID:32169170
Neuronal Morphology and Synapse Count in the Nematode Worm. PMID:31695603
Turning the Tide of Data Sharing. PMID:31612297
DeepBouton: Automated Identification of Single-Neuron Axonal Boutons at the Brain-Wide Scale. PMID:31105547
Artificial neural network filters for enhancing 3D optical microscopy images of neurites. PMID:30971853
Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation. PMID:30542954
FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree. PMID:30039210
Mining Big Neuron Morphological Data. PMID:30034462
Morphological Neuron Classification Based on Dendritic Tree Hierarchy. PMID:30008070
New Features for Neuron Classification. PMID:29705977
Spatial registration of neuron morphologies based on maximization of volume overlap. PMID:29669537
An open repository for single-cell reconstructions of the brain forest. PMID:29485626
Design and implementation of multi-signal and time-varying neural reconstructions. PMID:29360104
HyphaTracker: An ImageJ toolbox for time-resolved analysis of spore germination in filamentous fungi. PMID:29330515
SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology. PMID:28839271
Automated spatio-temporal analysis of dendritic spines and related protein dynamics. PMID:28827828
Morphology of Dbx1 respiratory neurons in the preBötzinger complex and reticular formation of neonatal mice. PMID:28763053
A Quantitative Golgi Study of Dendritic Morphology in the Mice Striatal Medium Spiny Neurons. PMID:28503136
Win-win data sharing in neuroscience. PMID:28139675
Toward Whole-Body Connectomics. PMID:27911739
Automated Neuron Tracing Methods: An Updated Account. PMID:27447185
N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions. PMID:27412029
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845
Novel 3D light microscopic analysis of IUGR placentas points to a morphological correlate of compensated ischemic placental disease in humans. PMID:27045698
Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. PMID:26701809
Neuron anatomy structure reconstruction based on a sliding filter. PMID:26498293
Sharing Neuron Data: Carrots, Sticks, and Digital Records. PMID:26447712
BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images. PMID:26182412
Topological characterization of neuronal arbor morphology via sequence representation: I--motif analysis. PMID:26156313
The importance of metadata to assess information content in digital reconstructions of neuronal morphology. PMID:25653123
Doubling up on the fly: NeuroMorpho.Org Meets Big Data. PMID:25576225
Statistical analysis and data mining of digital reconstructions of dendritic morphologies. PMID:25538569
Big data from small data: data-sharing in the 'long tail' of neuroscience. PMID:25349910
Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections. PMID:25309338
Novel 3D microscopic analysis of human placental villous trees reveals unexpected significance of branching angles. PMID:25155961
Quantitative arbor analytics: unsupervised harmonic co-clustering of populations of brain cell arbors based on L-measure. PMID:25086878
A comparison of manual neuronal reconstruction from biocytin histology or 2-photon imaging: morphometry and computer modeling. PMID:25071470
Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology. PMID:24972604
Comparative neuronal morphology of the cerebellar cortex in afrotherians, carnivores, cetartiodactyls, and primates. PMID:24795574
A software tool for the analysis of neuronal morphology data. PMID:24529393
Morphometric, geographic, and territorial characterization of brain arterial trees. PMID:24470176
Rapid reconstruction of 3D neuronal morphology from light microscopy images with augmented rayburst sampling. PMID:24391966
The Filament Editor: an interactive software environment for visualization, proof-editing and analysis of 3D neuron morphology. PMID:24323305
Comparative morphology of dendritic arbors in populations of Purkinje cells in mouse sulcus and apex. PMID:24312734
Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography. PMID:23727319
Neuronal morphology goes digital: a research hub for cellular and system neuroscience. PMID:23522039
Computer aided alignment and quantitative 4D structural plasticity analysis of neurons. PMID:23408326
NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF PubMed citations: 38.

38 articles citing: NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF

Data Management Schema Design for Effective Nanoparticle Formulation for Neurotherapeutics. PMID:35399334
RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations. PMID:35311003
Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations. PMID:34252950
Efficient metadata mining of web-accessible neural morphologies. PMID:34022302
Highlights from the Era of Open Source Web-Based Tools. PMID:33472826
Single-neuron dynamical effects of dendritic pruning implicated in aging and neurodegeneration: towards a measure of neuronal reserve. PMID:33446683
Spatially resolved dendritic integration: towards a functional classification of neurons. PMID:33282551
The natverse, a versatile toolbox for combining and analysing neuroanatomical data. PMID:32286229
Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform. PMID:31440153
A Segmentation Scheme for Complex Neuronal Arbors and Application to Vibration Sensitive Neurons in the Honeybee Brain. PMID:30319384
Mining Big Neuron Morphological Data. PMID:30034462
NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. PMID:29949998
An open repository for single-cell reconstructions of the brain forest. PMID:29485626
Design and implementation of multi-signal and time-varying neural reconstructions. PMID:29360104
Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. PMID:28929974
Morphology of Dbx1 respiratory neurons in the preBötzinger complex and reticular formation of neonatal mice. PMID:28763053
Win-win data sharing in neuroscience. PMID:28139675
Morphological Neuron Classification Using Machine Learning. PMID:27847467
Is realistic neuronal modeling realistic? PMID:27535372
Sharing Neuron Data: Carrots, Sticks, and Digital Records. PMID:26447712
The importance of metadata to assess information content in digital reconstructions of neuronal morphology. PMID:25653123
Doubling up on the fly: NeuroMorpho.Org Meets Big Data. PMID:25576225
Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology. PMID:24972604
Dynamic modulation of spike timing-dependent calcium influx during corticostriatal upstates. PMID:23843436
Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography. PMID:23727319
Digital morphometry of rat cerebellar climbing fibers reveals distinct branch and bouton types. PMID:23077053
Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. PMID:22685429
Morphological homogeneity of neurons: searching for outlier neuronal cells. PMID:22615032
Digital reconstructions of neuronal morphology: three decades of research trends. PMID:22536169
The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. PMID:21249531
Passive and active shaping of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. PMID:21207127
Unveiling the neuromorphological space. PMID:21160547
Technical and organizational considerations for the long-term maintenance and development of digital brain atlases and web-based databases. PMID:20661458
On comparing neuronal morphologies with the constrained tree-edit-distance. PMID:19636974
Quantitative morphometry of electrophysiologically identified CA3b interneurons reveals robust local geometry and distinct cell classes. PMID:19496174
The central role of neuroinformatics in the National Academy of Engineering's grandest challenge: reverse engineer the brain. PMID:19140032
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). PMID:18958629
The neuroscience information framework: a data and knowledge environment for neuroscience. PMID:18946742
Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology PubMed citations: 17.

17 articles citing: Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology

Efficient metadata mining of web-accessible neural morphologies. PMID:34022302
Brief Sensory Deprivation Triggers Cell Type-Specific Structural and Functional Plasticity in Olfactory Bulb Neurons. PMID:33483429
Highlights from the Era of Open Source Web-Based Tools. PMID:33472826
An important role of PHRF1 in dendritic architecture and memory formation by modulating TGF-β signaling. PMID:32616804
Quantifying How Staining Methods Bias Measurements of Neuron Morphologies. PMID:31191283
Identifying Weak Signals in Inhomogeneous Neuronal Images for Large-Scale Tracing of Sparsely Distributed Neurites. PMID:30635864
Embryonic and postnatal neurogenesis produce functionally distinct subclasses of dopaminergic neuron. PMID:29676260
Influence of the size and curvedness of neural projections on the orientationally averaged diffusion MR signal. PMID:29675413
An open repository for single-cell reconstructions of the brain forest. PMID:29485626
Morphology of Dbx1 respiratory neurons in the preBötzinger complex and reticular formation of neonatal mice. PMID:28763053
Important roles of Vilse in dendritic architecture and synaptic plasticity. PMID:28368047
Win-win data sharing in neuroscience. PMID:28139675
Sharing Neuron Data: Carrots, Sticks, and Digital Records. PMID:26447712
Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus. PMID:26402459
Towards the automatic classification of neurons. PMID:25765323
The importance of metadata to assess information content in digital reconstructions of neuronal morphology. PMID:25653123
Doubling up on the fly: NeuroMorpho.Org Meets Big Data. PMID:25576225