Gating-ML
The Gating-ML specification represents a proposal on how to form unambiguous XML-based gate definitions that may be used independently as well as included as one of the components of ACS. The specification supports rectangular gates in n dimensions (i.e., from one-dimensional range gates up to n-dimensional hyper-rectangular regions), polygon gates in two (and more) dimensions, ellipsoid gates in n dimensions, decision tree structures, and Boolean collections of any of the types of gates. Gates can be uniquely identified and may be ordered into a hierarchical structure to describe a gating strategy. Gates may be applied on parameters as in list mode data files (e.g., FCS files) or on transformed parameters as described by any explicit parameter transformation.
Description
More detailed information about this field from each metasource.
The Gating-ML specification represents a proposal on how to form unambiguous XML-based gate definitions that may be used independently as well as included as one of the components of ACS. The specification supports rectangular gates in n dimensions (i.e., from one-dimensional range gates up to n-dimensional hyper-rectangular regions), polygon gates in two (and more) dimensions, ellipsoid gates in n dimensions, decision tree structures, and Boolean collections of any of the types of gates. Gates can be uniquely identified and may be ordered into a hierarchical structure to describe a gating strategy. Gates may be applied on parameters as in list mode data files (e.g., FCS files) or on transformed parameters as described by any explicit parameter transformation.
metasource: Fairsharing.orgversion: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
http://flowcyt.sourceforge.net/gating/Webpage
More detailed information about this field from each metasource.
http://flowcyt.sourceforge.net/gating/
metasource: Fairsharing.orgversion: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Gating-ML: XML-based gating descriptions in flow cytometry
PMID: 18773465
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
ISAC's Gating-ML 2.0 data exchange standard for gating description
PMID: 25976062
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Flow cytometry data standards
PMID: 21385382
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
Gating-ML: XML-based gating descriptions in flow cytometry
PMID: 18773465
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
ISAC's Gating-ML 2.0 data exchange standard for gating description
PMID: 25976062
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Flow cytometry data standards
PMID: 21385382
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Gating-ML: XML-based gating descriptions in flow cytometry
PubMed citations: 15.
15 articles citing: Gating-ML: XML-based gating descriptions in flow cytometry
CytoML for cross-platform cytometry data sharing. PMID:30551257
CytoBinning: Immunological insights from multi-dimensional data. PMID:30379838
Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data. PMID:25979346
ISAC's Gating-ML 2.0 data exchange standard for gating description. PMID:25976062
ISAC's classification results file format. PMID:25407887
Flow cytometry bioinformatics. PMID:24363631
GenePattern flow cytometry suite. PMID:23822732
Advances in human B cell phenotypic profiling. PMID:23087687
FCS 3.1 Implementation guidance. PMID:22278913
Flow cytometry data standards. PMID:21385382
Data File Standard for Flow Cytometry, version FCS 3.1. PMID:19937951
Publishing flow cytometry data. PMID:19915158
FuGEFlow: data model and markup language for flow cytometry. PMID:19531228
flowCore: a Bioconductor package for high throughput flow cytometry. PMID:19358741
A chromatic explosion: the development and future of multiparameter flow cytometry. PMID:19137647 -
ISAC's Gating-ML 2.0 data exchange standard for gating description
PubMed citations: 7.
7 articles citing: ISAC's Gating-ML 2.0 data exchange standard for gating description
FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows. PMID:34804056
Reporting and connecting cell type names and gating definitions through ontologies. PMID:31272390
The Computational article format: Software as a research output. PMID:30551258
CytoML for cross-platform cytometry data sharing. PMID:30551257
Validation of biomarkers to predict response to immunotherapy in cancer: Volume I - pre-analytical and analytical validation. PMID:27895917
Computational flow cytometry: helping to make sense of high-dimensional immunology data. PMID:27320317
Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium. PMID:26861911 -
Flow cytometry data standards
PubMed citations: 5.
5 articles citing: Flow cytometry data standards
Computational flow cytometry: helping to make sense of high-dimensional immunology data. PMID:27320317
Managing Multi-center Flow Cytometry Data for Immune Monitoring. PMID:26085786
Flow cytometry bioinformatics. PMID:24363631
Systems biological approaches to measure and understand vaccine immunity in humans. PMID:23796714
Computational analysis of high-throughput flow cytometry data. PMID:22708834
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More detailed information about this field from each metasource.
data transformation
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
flow cytometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
report
metasource: Fairsharing.org
version: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
data transformation
metasource: Fairsharing.orgversion: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
flow cytometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
report
metasource: Fairsharing.orgversion: FAIRsharing.org: Gating-ML; Gating-ML; DOI: https://doi.org/10.25504/FAIRsharing.qpyp5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
data transformation flow cytometry assay report
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