Ontology of Physics for Biology
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Ontology of Physics for Biology
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
OPB
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
Names
More detailed information about this field from each metasource.
Ontology of Physics for Biology
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
OPB
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
Names
More detailed information about this field from each metasource.
Ontology of Physics for Biology
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
OPB
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
The Ontology of Physics for Biology is a reference of classical physics as applied to the dynamics of biological systems. This resource provides a reference ontology of physical properties (e.g., pressure, chemical concentration) and principles (e.g., Ohm’s law, Ficke’s law) by which the physical meaning of biosimulation models may be annotated.
Description
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The Ontology of Physics for Biology is a reference of classical physics as applied to the dynamics of biological systems. This resource provides a reference ontology of physical properties (e.g., pressure, chemical concentration) and principles (e.g., Ohm’s law, Ficke’s law) by which the physical meaning of biosimulation models may be annotated.
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
The OPB is a reference ontology of classical physics and thermodynamics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
Webpage:
https://sites.google.com/site/semanticsofbiologicalprocesses/projects/the-ontology-of-physics-for-biology-opbWebpage
More detailed information about this field from each metasource.
https://sites.google.com/site/semanticsofbiologicalprocesses/projects/the-ontology-of-physics-for-biology-opb
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
Publications:
Publications
More detailed information about this field from each metasource.
Physical properties of biological entities: an introduction to the ontology of physics for biology
PMID: 22216106
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Ontology of physics for biology: representing physical dependencies as a basis for biological processes
PMID: 24295137
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://dx.plos.org/10.1371/journal.pone.0028708
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
Publications
More detailed information about this field from each metasource.
Physical properties of biological entities: an introduction to the ontology of physics for biology
PMID: 22216106
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Ontology of physics for biology: representing physical dependencies as a basis for biological processes
PMID: 24295137
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://dx.plos.org/10.1371/journal.pone.0028708
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OPB
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Physical properties of biological entities: an introduction to the ontology of physics for biology
PubMed citations: 15.
15 articles citing: Physical properties of biological entities: an introduction to the ontology of physics for biology
Characteristics of mathematical modeling languages that facilitate model reuse in systems biology: a software engineering perspective. PMID:34083542
Model annotation and discovery with the Physiome Model Repository. PMID:31492098
Harmonizing semantic annotations for computational models in biology. PMID:30462164
SemGen: a tool for semantics-based annotation and composition of biosimulation models. PMID:30256901
Qualitative causal analyses of biosimulation models. PMID:28804276
The Inappropriate Symmetries of Multivariate Statistical Analysis in Geometric Morphometrics. PMID:27512236
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. PMID:26716837
A reappraisal of how to build modular, reusable models of biological systems. PMID:25275523
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. PMID:24755304
Ontology of physics for biology: representing physical dependencies as a basis for biological processes. PMID:24295137
CLASSIFYING PROCESSES: AN ESSAY IN APPLIED ONTOLOGY. PMID:23888086
Representing physiological processes and their participants with PhysioMaps. PMID:23735231
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Multiscale modeling and data integration in the virtual physiological rat project. PMID:22805979
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. PMID:22539675 -
Ontology of physics for biology: representing physical dependencies as a basis for biological processes
PubMed citations: 4.
4 articles citing: Ontology of physics for biology: representing physical dependencies as a basis for biological processes
Harmonizing semantic annotations for computational models in biology. PMID:30462164
Qualitative causal analyses of biosimulation models. PMID:28804276
The Inappropriate Symmetries of Multivariate Statistical Analysis in Geometric Morphometrics. PMID:27512236
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. PMID:26716837 - http://dx.plos.org/10.1371/journal.pone.0028708
Tags:
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concentration
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
kinetic model
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
mathematical model
metasource: Fairsharing.org
version: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
concentration
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
kinetic model
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
mathematical model
metasource: Fairsharing.orgversion: FAIRsharing.org: OPB; Ontology of Physics for Biology; DOI: https://doi.org/10.25504/FAIRsharing.qcceez; Last edited: Dec. 11, 2019, 4:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
concentration kinetic model mathematical model
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