GeneNet

ACTIVITY

ACTIVITY, a database on DNA site sequences with known activity magnitudes, measurement systems and sequence-activity relationships under fixed experimental conditions is additionally adapted to applic ...

SELEXdb

SELEX_DB is an online resource containing both the experimental data on in vitro selected DNA/RNA oligomers (aptamers) and the applets for these oligomers recognition. In vitro selection of oligomers ...

ASPD

ASPD is a new curated database that incorporates data on full-length proteins, protein domains and peptides that were obtained through in vitro directed evolution process (mainly by means of phage dis ...

GeneNet Engine

GeneNet Engine is an exploratory tool to aid hypothesis and biomarker development at a systems-level for genotype-phenotype relationships. Expressed phenotypes may arise due to interactions between mu ...

TRANSPATH®

TRANSPATH® is a database on signal transduction pathways that are modeled as bipartite graphs with molecules and reactions as node classes [1,2,3,4,5]. The molecule entries include polypeptides, modif ...

TRANSFAC®

The TRANSFAC® database has been constructed to model the interaction of eukaryotic transcription factors with their DNA-binding sites and how this affects gene expression. At its core are the three ta ...

Experimental data repository for KInetic MOdels of biological SYStems

KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme ...

PROkariotIC Database Of Gene-Regulation

PRODORIC is a comprehensive database about gene regulation and gene expression in prokaryotes. It includes a manually curated and unique collection of transcription factor binding sites.

BioCarta Pathways

Online maps of metabolic and signaling pathways

SENTRA

SENTRA (http://www.ncbi.nlm.nih.gov/Complete_Genomes/SignalCensus.html) is a database of proteins associated with microbial signal transduction. The database currently includes the classical two-compo ...

PDBSite

3D structure of protein functional sites

PRODORIC2

TRANSCompel®

The TRANSCompel® database is devoted to the particular aspect of gene transcriptional regulation [1-7]. It contains information about composite elements - the basic structures of combinatorial gene re ...

Het-PDB Navi

Het-PDB Navi is a database that collects small molecules found in Protein Data Bank (PDB). An atomic reality of protein function is based on interactions between a protein and another molecule. One of ...

The NIST Reference on Constants, Units, and Uncertainty

This database gives values of the basic constants and conversion factors of physics and chemistry resulting from the 2002 least-squares adjustment of the fundamental physical constants as published by ...

Annotated regulatory Binding Sites from Orthologous Promoters

ABS: A database of Annotated regulatory Binding Sites from known binding sites identified in promoters of orthologous vertebrate genes.

Gene Ontology

The Gene Ontology resource provides a computational representation of our current scientific knowledge about the functions of genes (or, more properly, the protein and non-coding RNA molecules produce ...

TrSDB

Transcription factor database

SKEMPI

The new version of the SKEMPI database, with more than 7000 mutation data. The SKEMPI2 database contains data on the changes in thermodynamic parameters and kinetic rate constants upon mutation, for p ...