Europe PubMed Central
Names
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Europe PubMed Central
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:05.943295
europe_pmc
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:05.943295
Names
More detailed information about this field from each metasource.
Europe PubMed Central
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:05.943295
europe_pmc
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:05.943295
Other names: Europe PMC, europe_pmc
Names
More detailed information about this field from each metasource.
Europe PubMed Central
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:05.943295
europe_pmc
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:05.943295
Europe PubMed Central (Europe PMC) is an on-line database that offers free access to a large and growing collection of biomedical research literature.
Description
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Europe PubMed Central (Europe PMC) is an on-line database that offers free access to a large and growing collection of biomedical research literature.
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC (https://europepmc.org) is a comprehensive resource of biomedical research publications that offers advanced tools for search, retrieval, and interaction with the scientific literature. This article outlines new developments since 2014. In addition to delivering the core database and services, Europe PMC focuses on three areas of development: individual user services, data integration, and infrastructure to support text and data mining. Europe PMC now provides user accounts to save search queries and claim publications to ORCIDs, as well as open access profiles for authors based on public ORCID records. We continue to foster connections between scientific data and literature in a number of ways. All the data behind the paper - whether in structured archives, generic archives or as supplemental files - are now available via links to the BioStudies database. Text-mined biological concepts, including database accession numbers and data DOIs, are highlighted in the text and linked to the appropriate data resources. The SciLite community annotation platform accepts text-mining results from various contributors and overlays them on research articles as licence allows. In addition, text miners and developers can access all open content via APIs or via the FTP site.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Archive of life sciences journal literature.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:05.943295
Webpage:
https://europepmc.orgWebpage
More detailed information about this field from each metasource.
https://europepmc.org
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://europepmc.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:05.943295
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
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http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Europe PMC: a full-text literature database for the life sciences and platform for innovation
PMID: 25378340
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC in 2017
PMID: 29161421
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
UKPMC: a full text article resource for the life sciences
PMID: 21062818
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC in 2020
PMID: 33180112
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkx1005
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Europe PMC: a full-text literature database for the life sciences and platform for innovation
PMID: 25378340
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC in 2017
PMID: 29161421
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
UKPMC: a full text article resource for the life sciences
PMID: 21062818
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Europe PMC in 2020
PMID: 33180112
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkx1005
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Europe PMC: a full-text literature database for the life sciences and platform for innovation
PubMed citations: 48.
48 articles citing: Europe PMC: a full-text literature database for the life sciences and platform for innovation
Wikidata and the bibliography of life. PMID:35821898
Comparative Genomic Analysis of the DUF34 Protein Family Suggests Role as a Metal Ion Chaperone or Insertase. PMID:34572495
LitSuggest: a web-based system for literature recommendation and curation using machine learning. PMID:33950204
Finding What Is Inaccessible: Antimicrobial Resistance Language Use among the One Health Domains. PMID:33916878
On the design of linked datasets mapping networks of collaboration in the genomic sequencing of Saccharomyces cerevisiae, Homo sapiens, and Sus scrofa. PMID:33604022
Open Targets Platform: supporting systematic drug-target identification and prioritisation. PMID:33196847
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. PMID:32379317
Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords. PMID:31984130
Combining lexical and context features for automatic ontology extension. PMID:31931870
DisProt: intrinsic protein disorder annotation in 2020. PMID:31713636
Enzyme annotation in UniProtKB using Rhea. PMID:31688925
Community curation of bioinformatics software and data resources. PMID:31624831
PhaSePro: the database of proteins driving liquid-liquid phase separation. PMID:31612960
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. PMID:31566222
Ontology based mining of pathogen-disease associations from literature. PMID:31533864
LitSense: making sense of biomedical literature at sentence level. PMID:31020319
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry. PMID:30835438
With open science gaining traction, do we need an Australasia PubMed Central (PMC)? A qualitative investigation. PMID:30794701
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. PMID:30576492
Ensembl variation resources. PMID:30576484
EWAS Atlas: a curated knowledgebase of epigenome-wide association studies. PMID:30364969
Overview of the BioCreative VI text-mining services for Kinome Curation Track. PMID:30329035
Identifying High-Priority Proteins Across the Human Diseasome Using Semantic Similarity. PMID:30256117
Five Years of the KNIME Vernalis Cheminformatics Community Contribution. PMID:30182834
A blueprint for human whole-cell modeling. PMID:29806041
QTLTableMiner++: semantic mining of QTL tables in scientific articles. PMID:29801439
Usage of cell nomenclature in biomedical literature. PMID:29322912
Triage by ranking to support the curation of protein interactions. PMID:29220432
Europe PMC in 2017. PMID:29161421
The BioStudies database-one stop shop for all data supporting a life sciences study. PMID:29069414
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data. PMID:28948232
PaperBLAST: Text Mining Papers for Information about Homologs. PMID:28845458
A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. PMID:28815126
MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers. PMID:28623182
Literature evidence in open targets - a target validation platform. PMID:28587637
Discovering and linking public omics data sets using the Omics Discovery Index. PMID:28486464
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges. PMID:28025348
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). PMID:27899670
Open Targets: a platform for therapeutic target identification and validation. PMID:27899665
Genenames.org: the HGNC and VGNC resources in 2017. PMID:27799471
Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing. PMID:27662471
Ten Simple Rules for Taking Advantage of Git and GitHub. PMID:27415786
Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. PMID:27092246
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation. PMID:27011785
A review of the new HGNC gene family resource. PMID:26842383
SureChEMBL: a large-scale, chemically annotated patent document database. PMID:26582922
Biological databases for human research. PMID:25712261 -
Europe PMC in 2017
PubMed citations: 25.
25 articles citing: Europe PMC in 2017
Pre2Pub-Tracking the Path From Preprint to Journal Article: Algorithm Development and Validation. PMID:35285808
The speed of information propagation in the scientific network distorts biomedical research. PMID:35070506
Citation needed? Wikipedia bibliometrics during the first wave of the COVID-19 pandemic. PMID:35022700
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature. PMID:34966925
Development of a bioinformatics platform for analysis of quantitative transcriptomics and proteomics data: the OMnalysis. PMID:34820180
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
Biomedical articles share annotations with their citation neighbors. PMID:33637047
Towards a unified open access dataset of molecular interactions. PMID:33262342
From ArrayExpress to BioStudies. PMID:33211879
WikiPathways: connecting communities. PMID:33211851
Europe PMC in 2020. PMID:33180112
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. PMID:33175170
Pathway information extracted from 25 years of pathway figures. PMID:33168034
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. PMID:32379317
Opening up connectivity between documents, structures and bioactivity. PMID:32280387
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
Database Resources of the National Genomics Data Center in 2020. PMID:31702008
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. PMID:31566222
Quantifying the impact of public omics data. PMID:31383865
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research. PMID:31160594
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. PMID:30809638
Open Targets Platform: new developments and updates two years on. PMID:30462303
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
PubMed Labs: an experimental system for improving biomedical literature search. PMID:30239682
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510 -
UKPMC: a full text article resource for the life sciences
PubMed citations: 18.
18 articles citing: UKPMC: a full text article resource for the life sciences
Europe PMC in 2017. PMID:29161421
PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. PMID:25925572
Section level search functionality in Europe PMC. PMID:25774284
Europe PMC: a full-text literature database for the life sciences and platform for innovation. PMID:25378340
PomBase 2015: updates to the fission yeast database. PMID:25361970
Ensembl 2015. PMID:25352552
The complex portal--an encyclopaedia of macromolecular complexes. PMID:25313161
The European Bioinformatics Institute's data resources 2014. PMID:24271396
The ChEMBL bioactivity database: an update. PMID:24214965
Evaluation and cross-comparison of lexical entities of biological interest (LexEBI). PMID:24124474
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. PMID:24112383
Database citation in full text biomedical articles. PMID:23734176
Application of text-mining for updating protein post-translational modification annotation in UniProtKB. PMID:23517090
NCBI Bookshelf: books and documents in life sciences and health care. PMID:23203889
Text-mining solutions for biomedical research: enabling integrative biology. PMID:23150036
GeneView: a comprehensive semantic search engine for PubMed. PMID:22693219
"Free full text articles": where to search for them? PMID:22223965
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655 -
Europe PMC in 2020
PubMed citations: 11.
11 articles citing: Europe PMC in 2020
Quantifying research waste in ecology. PMID:35864230
The Immunometabolic Atlas: A tool for design and interpretation of metabolomics studies in immunology. PMID:35550647
Data Mining, Quality and Management in the Life Sciences. PMID:35507257
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types. PMID:35208748
The European Bioinformatics Institute (EMBL-EBI) in 2021. PMID:34850134
Results availability and timeliness of registered COVID-19 clinical trials: interim cross-sectional results from the DIRECCT study. PMID:34810189
The European Genome-phenome Archive in 2021. PMID:34791407
Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases. PMID:34697638
Impact of Preanalytical and Analytical Methods on Cell-Free DNA Diagnostics. PMID:34552921
A call to eradicate non-inclusive terms from the life sciences. PMID:33556000
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. PMID:33245775 - http://dx.doi.org/10.1093/nar/gkx1005
Tags:
Tags
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abstract
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
bibliography
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
citation
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
patent
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
text mining
metasource: Fairsharing.org
version: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
literature and language
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:05.943295
Tags
More detailed information about this field from each metasource.
abstract
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
bibliography
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
citation
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
patent
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
text mining
metasource: Fairsharing.orgversion: FAIRsharing.org: Europe PMC; Europe PubMed Central; DOI: https://doi.org/10.25504/FAIRsharing.cmw6mm; Last edited: Feb. 15, 2021, 8:13 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
other molecular biology databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
literature and language
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:05.943295
abstract bibliography citation patent text mining molecular biology literature and language
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