EchoBase
Names
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EchoBase
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
an integrated post-genomic database for E.coli
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
EchoBASE
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:41.315786
echobase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:41.315786
Names
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EchoBase
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
an integrated post-genomic database for E.coli
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
EchoBASE
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
echobase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
Other names: an integrated post-genomic database for E.coli, EchoBASE, echobase
Names
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EchoBase
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
an integrated post-genomic database for E.coli
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
EchoBASE
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
echobase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
EchoBase is a database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655.
Description
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EchoBase is a database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655.
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
A database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
Webpage:
https://www.york.ac.uk/res/thomas/index.cfmWebpage
More detailed information about this field from each metasource.
https://www.york.ac.uk/res/thomas/index.cfm
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
http://www.york.ac.uk/res/thomas/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
Licence:
Name: CopyrightsLicence name
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Copyrights
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
Licence URL
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https://www.york.ac.uk/about/legal-statements/#tab-3
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
Publications:
Publications
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EchoBASE: an integrated post-genomic database for Escherichia coli
PMID: 15608209
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:41.315786
Publications
More detailed information about this field from each metasource.
EchoBASE: an integrated post-genomic database for Escherichia coli
PMID: 15608209
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:41.315786
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EchoBASE: an integrated post-genomic database for Escherichia coli
PubMed citations: 40.
40 articles citing: EchoBASE: an integrated post-genomic database for Escherichia coli
Microbial Musings - December 2020. PMID:33353584
Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data. PMID:31196115
Measures of single- versus multiple-round translation argue against a mechanism to ensure coupling of transcription and translation. PMID:30275301
A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0. PMID:30115066
The Production of Curli Amyloid Fibers Is Deeply Integrated into the Biology of Escherichia coli. PMID:29088115
Protein Bioinformatics Databases and Resources. PMID:28150231
Inner Membrane Protein YhcB Interacts with RodZ Involved in Cell Shape Maintenance in Escherichia coli. PMID:27335665
Escherichia coli Pyruvate Dehydrogenase Complex Is an Important Component of CXCL10-Mediated Antimicrobial Activity. PMID:26553462
ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli. PMID:26481353
Improved protease digestion conditions for membrane protein detection. PMID:25884272
Inhibition of the β-barrel assembly machine by a peptide that binds BamD. PMID:25646443
The 216-bp marB gene of the marRAB operon in Escherichia coli encodes a periplasmic protein which reduces the transcription rate of marA. PMID:23710538
BSRD: a repository for bacterial small regulatory RNA. PMID:23203879
ECMDB: the E. coli Metabolome Database. PMID:23109553
A genomic reappraisal of symbiotic function in the aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations. PMID:22229056
EcoliWiki: a wiki-based community resource for Escherichia coli. PMID:22064863
GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli. PMID:21181144
Global regulator H-NS and lipoprotein NlpI influence production of extracellular DNA in Escherichia coli. PMID:20833130
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. PMID:20627862
The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential β-barrel protein LptD. PMID:20615876
Genome-wide screening of genes whose enhanced expression affects glycogen accumulation in Escherichia coli. PMID:20118147
Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae. PMID:20040079
Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. PMID:19744923
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. PMID:19531735
Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics. PMID:19343722
Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli. PMID:18832143
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli. PMID:18375759
Protein abundance profiling of the Escherichia coli cytosol. PMID:18304323
Application of Mistic to improving the expression and membrane integration of histidine kinase receptors from Escherichia coli. PMID:17985211
Multidimensional annotation of the Escherichia coli K-12 genome. PMID:17940092
Functional analysis of the GTPases EngA and YhbZ encoded by Salmonella typhimurium. PMID:17905831
Computational prediction and experimental verification of the gene encoding the NAD+/NADP+-dependent succinate semialdehyde dehydrogenase in Escherichia coli. PMID:17873044
A survey of orphan enzyme activities. PMID:17623104
Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes. PMID:17389915
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes. PMID:17272300
Adaptive diversification in genes that regulate resource use in Escherichia coli. PMID:17238290
Nitric oxide in chemostat-cultured Escherichia coli is sensed by Fnr and other global regulators: unaltered methionine biosynthesis indicates lack of S nitrosation. PMID:17189370
Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. PMID:17122336
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics. PMID:16753052
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. PMID:16397293
Tags:
Tags
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escherichia coli
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
enteric flora
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
gene expression
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
microarray data
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
protein-protein interaction
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
proteomics
metasource: re3data.org
version: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:41.315786
Tags
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escherichia coli
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
enteric flora
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
gene expression
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
microarray data
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
protein-protein interaction
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
proteomics
metasource: re3data.orgversion: re3data.org: EchoBase; editing status 2022-04-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R38W6H last accessed: 2022-11-04
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:41.315786
escherichia coli bioinformatics enteric flora gene expression genetics genomics microarray data protein-protein interaction proteomics model organisms
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