BSM-Arc

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BSM-Arc

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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bsm-arc

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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Other names: bsm-arc

The Biological Structure Model Archive (BSM-Arc) aims to collect raw data obtained via in silico methods related to structural biology, such as computationally modeled 3D structures and molecular dynamics trajectories. Since BSM-Arc does not enforce a specific data format for the raw data, depositors are free to upload their data without any prior conversion. Besides uploading raw data, BSM-Arc enables depositors to annotate their data with additional explanations and figures. It is possible to recreate 3D scenes as shown in the corresponding scientific article in an interactive manner.

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Publications

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The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations
PMID: 32026396

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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• The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations PubMed citations: 14.

  14 articles citing: The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

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  Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. PMID:35273347

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  Identification of ultra-rare disruptive variants in voltage-gated calcium channel-encoding genes in Japanese samples of schizophrenia and autism spectrum disorder. PMID:35220405

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  Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins. PMID:34745807

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  Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data. PMID:34664328

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  Dynamic Docking Using Multicanonical Molecular Dynamics: Simulating Complex Formation at the Atomistic Level. PMID:33759128

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  An RNA-centric historical narrative around the Protein Data Bank. PMID:33744291

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  Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities. PMID:33731831

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  Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations. PMID:33658550

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  Using Open Data to Rapidly Benchmark Biomolecular Simulations: Phospholipid Conformational Dynamics. PMID:33496579

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  Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia. PMID:32942984

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  Knowledge-based structural models of SARS-CoV-2 proteins and their complexes with potential drugs. PMID:32379896

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  Biophysical Reviews' national biophysical society partnership program. PMID:32350823

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  Overview of the big data bioinformatics symposium (2SCA) at BSJ2019. PMID:32060733

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  Big data science at AMED-BINDS. PMID:32030637

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molecular dynamics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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molecular modelling

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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small molecules

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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electron microscopy

metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:37.757240

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molecular dynamics molecular modelling small molecule electron microscopy