Tag: molecular dynamics
Found 13 sources
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MolMovDB
The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure analysis is also available.
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Dynamic Proteomics
The Dynamic Proteomics database is a compendium of endogenously YFP-tagged human proteins and their time-lapse microscopy movies. These movies show the protein dynamics in space and in time in individual living human cancer cells in response to an an
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PCDB
Protein Conformational Diversity database
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BSDB
Biomolecule Stretching Database
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BSM-Arc
The Biological Structure Model Archive (BSM-Arc) aims to collect raw data obtained via in silico methods related to structural biology, such as computationally modeled 3D structures and molecular dynamics trajectories. Since BSM-Arc does not enforce
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CDDB
Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is applied to most structures present in the electron
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Hybrid MM CG
Automatic Set Up of Molecular Mechanics/Coarse-Grained Simulations for Human G Protein-Coupled Receptor/Ligand Complexes.
Automatic set up of Molecular Mechanics/Coarse-Grained (MM/CG) simulations for human G Protein-Coupled Receptor (GPCR)/ligand c
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Automated Topology Builder (ATB)
The Automated Topology Builder (ATB) and Repository is intended to facilitate the development of molecular force fields for Molecular Dynamics or Monte Carlo simulations of biomolecular systems. Applications include the study of biomolecule:ligand co
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MoDEL
Database of protein Molecular Dynamics simulations, with 1800 trajectories representing different structural clusters of the PDB.
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GPCRmd
GPCRmd uncovers the dynamics of the 3D-GPCRome.
The online resource for GPCR simulations.
GPCRmd is an online platform with web-based visualization capabilities and a comprehensive analysis toolbox that allows scientists from any discipline to visu
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LIMONADA
Limonada (Lipid Membrane Open Network And Database) is a database dedicated to the simulation of biological membranes. limonada intends to provide an open library of membranes, along with the description of lipids, topologies and forcefields mandato
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D3PM
D3PM is a Comprehensive Database for Protein Motions Ranging from Residue to Domain
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CoDNaS-Q
CoDNaS Quaternary is a high confidence database of conformational diversity in proteins that present a biologically relevant quaternary structure.
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*ReputationScore indicates how established a given datasource is. Find out more.
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