Other names: alphaknot
AlphaKnot is a server that measures entanglement in AlphaFold-solved protein models while considering pLDDT confidence values.
proteomics sequence analysis protein folds and structural domains
A3D Database is a database for structure-based protein aggregation predictions for the human proteome
Evolutionary-oriented database of RNA recognition motif sequences.
AlphaFold DB provides open access to 3D protein structure predictions for the human proteome and 20 other model organisms to accelerate scientific research. It is based on AlphaFold AI system develope ...
KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire poly ...
Statistical detection of pathogen-associated protein domains.
The Animal Proteome Database (AniProtDB) is a comprehensive collection of proteomes from 100 species spanning 21 animal phyla. In addition to providing open access to this collection of high-quality m ...
Developed to foster effective usage of molecular models in biomedical research by providing convenient and comprehensive access to structural information for a protein - both experimental structures a ...
LinkProt collects information about protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed by cysteine), and determines likelihood of formation of links ...
Fuzzle 2.0 is a database of evolutionary related protein fragments.
Biomolecule Stretching Database
Database of MacroMolecular INteractions
Thioester-active enzymes
Protein Common Interface Database
Structural Atlas of Human Genome
ColabFold databases are MMseqs2 expandable profile databases to generate diverse multiple sequence alignments to predict protein structures.
Gene3D uses the information in CATH to predict the locations of structural domains on millions of protein sequences available in public databases. Sequence data from UniProtKB and Ensembl for domains ...
Protein Topology Graph library: Secondary structure-based protein topologies
The evolutionary history of topological variations in the CPA/AT transporters. Structural models, topology information and other details are presented in a searchable database, CPAfold
ImitateDB is a comprehensive database for information about molecular mimicry candidates represented as DMPs and MMPs for each experimentally validated unique host pathogen protein-protein interaction ...
a set of metadata to record transformative machine learning experiments with LINCS dataset