Ciona robusta Anatomy and Development Ontology
Names
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Ciona robusta Anatomy and Development Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Ciona_robusta_Anatomy_and_Development_Ontology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Names
More detailed information about this field from each metasource.
Ciona robusta Anatomy and Development Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Ciona_robusta_Anatomy_and_Development_Ontology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
Other names: Ciona_robusta_Anatomy_and_Development_Ontology
Names
More detailed information about this field from each metasource.
Ciona robusta Anatomy and Development Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Ciona_robusta_Anatomy_and_Development_Ontology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental tables.
Description
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The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental tables.
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
Webpage:
https://www.aniseed.cnrs.fr/aniseed/anatomy/find_devstageWebpage
More detailed information about this field from each metasource.
https://www.aniseed.cnrs.fr/aniseed/anatomy/find_devstage
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Licence:
Name: FreewareLicence name
More detailed information about this field from each metasource.
Publications:
Publications
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The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program
PMID: 20647237
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis
PMID: 33087765
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://dx.doi.org/10.1101/gr.108175.110
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
http://dx.doi.org/10.1093/nar/gkv966
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Publications
More detailed information about this field from each metasource.
The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program
PMID: 20647237
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis
PMID: 33087765
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://dx.doi.org/10.1101/gr.108175.110
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
http://dx.doi.org/10.1093/nar/gkv966
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
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The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program
PubMed citations: 51.
51 articles citing: The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program
Spatiotemporal dynamics of single cell stiffness in the early developing ascidian chordate embryo. PMID:33727646
Phylogenetic comparison of egg transparency in ascidians by hyperspectral imaging. PMID:33257720
Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer. PMID:32823766
ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates. PMID:31680137
From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain. PMID:31640768
Differential Expression of a Classic Cadherin Directs Tissue-Level Contractile Asymmetry during Neural Tube Closure. PMID:31639367
Dynamic interplay of cell fate, polarity and force generation in ascidian embryos. PMID:30007244
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. PMID:29149270
Functional and evolutionary insights from the Ciona notochord transcriptome. PMID:28928284
Proteomic responses to elevated ocean temperature in ovaries of the ascidian Ciona intestinalis. PMID:28500033
Generic Theoretical Models to Predict Division Patterns of Cleaving Embryos. PMID:27997824
Embryo Microinjection and Electroporation in the Chordate Ciona intestinalis. PMID:27805579
CardioTF, a database of deconstructing transcriptional circuits in the heart system. PMID:27635320
Quantifying Mosaic Development: Towards an Evo-Devo Postmodern Synthesis of the Evolution of Development via Differentiation Trees of Embryos. PMID:27548240
The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia. PMID:27279728
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates. PMID:26940763
A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo. PMID:26714026
ACAM, a novel member of the neural IgCAM family, mediates anterior neural tube closure in a primitive chordate. PMID:26542009
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. PMID:26420834
Correlations Between the Morphology of Sonic Hedgehog Expression Domains and Embryonic Craniofacial Shape. PMID:26321772
Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona. PMID:26206613
A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis. PMID:26025923
An organismal perspective on C. intestinalis development, origins and diversification. PMID:25807088
Bioadhesion in ascidians: a developmental and functional genomics perspective. PMID:25657840
Quantitative and in toto imaging in ascidians: working toward an image-centric systems biology of chordate morphogenesis. PMID:25262824
Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians. PMID:25209999
Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis. PMID:25189217
An otx/nodal regulatory signature for posterior neural development in ascidians. PMID:25121599
Ephrin-mediated restriction of ERK1/2 activity delimits the number of pigment cells in the Ciona CNS. PMID:25062608
Islet is a key determinant of ascidian palp morphogenesis. PMID:24993943
Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri. PMID:24789338
Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity. PMID:24680932
Towards 3D in silico modeling of the sea urchin embryonic development. PMID:24386014
Spatial expression of transcription factors in Drosophila embryonic organ development. PMID:24359758
NK4 antagonizes Tbx1/10 to promote cardiac versus pharyngeal muscle fate in the ascidian second heart field. PMID:24311985
Anterior-posterior regionalized gene expression in the Ciona notochord. PMID:24288133
Parallel evolution of chordate cis-regulatory code for development. PMID:24282393
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
Study of Cis-regulatory Elements in the Ascidian Ciona intestinalis. PMID:23997651
Endrov: an integrated platform for image analysis. PMID:23722203
Tbx2/3 is an essential mediator within the Brachyury gene network during Ciona notochord development. PMID:23674602
Progenitors of the protochordate ocellus as an evolutionary origin of the neural crest. PMID:23575111
Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development. PMID:23393190
Identification of a rudimentary neural crest in a non-vertebrate chordate. PMID:23135395
Genetic and genomic toolbox of the chordate Ciona intestinalis. PMID:22964837
Monoaminergic modulation of photoreception in ascidian: evidence for a proto-hypothalamo-retinal territory. PMID:22642675
FGF signaling establishes the anterior border of the Ciona neural tube. PMID:22627287
The identification of transcription factors expressed in the notochord of Ciona intestinalis adds new potential players to the brachyury gene regulatory network. PMID:21594950
Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. PMID:21338600
The importance of being specified: cell fate decisions and their role in cell biology. PMID:21079016 -
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis
PubMed citations: 6.
6 articles citing: The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis
Novel Insights on Nitric Oxide Synthase and NO Signaling in Ascidian Metamorphosis. PMID:35408864
A microRNA Cluster-Lefty Pathway is Required for Cellulose Synthesis During Ascidian Larval Metamorphosis. PMID:35372357
Developmental Table and Three-Dimensional Embryological Image Resource of the Ascidian Ascidiella aspersa. PMID:34977032
Bilaterally Asymmetric Helical Myofibrils in Ascidian Tadpole Larvae. PMID:34950666
The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX). PMID:33981708
Two-Round Ca2+ transient in papillae by mechanical stimulation induces metamorphosis in the ascidian Ciona intestinalis type A. PMID:33593191 - http://dx.doi.org/10.1101/gr.108175.110
- http://dx.doi.org/10.1093/nar/gkv966
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life cycle
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
developmental biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Tags
More detailed information about this field from each metasource.
life cycle
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: Ciona robusta Anatomy and Development Ontology; Ciona robusta Anatomy and Development Ontology; DOI: https://doi.org/10.25504/FAIRsharing.X0q5BG; Last edited: April 21, 2021, 12:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
developmental biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
life cycle life cycle stage developmental biology
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