R31NJMRM last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

viralzone
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

Other names: viralzone

ViralZone is a web resource for viral genes and families, providing detailed molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives easy access to UniProtKB/Swiss-Prot viral protein entries.

Webpage:

http://viralzone.expasy.org/

Licence:

Name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
URL: https://creativecommons.org/licenses/by-nc/4.0/

Publications:

Publications
More detailed information about this field from each metasource.

ViralZone: a knowledge resource to understand virus diversity
PMID: 20947564
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

ViralZone: recent updates to the virus knowledge resource
PMID: 23193299
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

http://dx.doi.org/10.1093/nar/gks1220
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

ViralZone: a knowledge resource to understand virus diversity PubMed citations: 138.

138 articles citing: ViralZone: a knowledge resource to understand virus diversity

Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox. PMID:35891416
Revolutionized virome research using systems microbiology approaches. PMID:35723062
DrugVirus.info 2.0: an integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs). PMID:35610052
The unequivocal preponderance of biocomputation in clinical virology. PMID:35539262
Defining virus-carrier networks that shape the composition of the mosquito core virome of a local ecosystem. PMID:35505691
Unique properties of Coronaviridae single-pass transmembrane domain regions as an adaptation to diverse membrane systems. PMID:35306415
Targeting Viral Methyltransferases: An Approach to Antiviral Treatment for ssRNA Viruses. PMID:35215972
Using networks to analyze and visualize the distribution of overlapping genes in virus genomes. PMID:35202429
Exploring Virome Diversity in Public Data in South America as an Approach for Detecting Viral Sources From Potentially Emerging Viruses. PMID:35126446
Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation. PMID:35083439
The pollen virome of wild plants and its association with variation in floral traits and land use. PMID:35082293
Phages in the Gut Ecosystem. PMID:35059329
LABRADOR-A Computational Workflow for Virus Detection in High-Throughput Sequencing Data. PMID:34960810
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes. PMID:34960694
A Method for the Analysis of African Swine Fever by Viral Metagenomic Sequencing. PMID:34888376
Designing of a Multi-epitope Vaccine against the Structural Proteins of Marburg Virus Exploiting the Immunoinformatics Approach. PMID:34870027
ZOVER: the database of zoonotic and vector-borne viruses. PMID:34634795
Integrative immunoinformatics paradigm for predicting potential B-cell and T-cell epitopes as viable candidates for subunit vaccine design against COVID-19 virulence. PMID:34489196
The Novel Drug Discovery to Combat COVID-19 by Repressing Important Virus Proteins Involved in Pathogenesis Using Medicinal Herbal Compounds. PMID:34484639
Safe-in-Man Broad Spectrum Antiviral Agents. PMID:34258746
Scaling relation between genome length and particle size of viruses provides insights into viral life history. PMID:34113814
A versatile reverse genetics platform for SARS-CoV-2 and other positive-strand RNA viruses. PMID:34103499
A multi-task CNN learning model for taxonomic assignment of human viruses. PMID:34078269
Rapid protein sequence evolution via compensatory frameshift is widespread in RNA virus genomes. PMID:34000995
Structure-based drug repurposing against COVID-19 and emerging infectious diseases: methods, resources and discoveries. PMID:33993214
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses. PMID:33988683
Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach. PMID:33973215
Diversity and distribution of viruses inhabiting the deepest ocean on Earth. PMID:33972725
Programmable RNA editing with compact CRISPR-Cas13 systems from uncultivated microbes. PMID:33941935
Potential Mimicry of Viral and Pancreatic β Cell Antigens Through Non-Spliced and cis-Spliced Zwitter Epitope Candidates in Type 1 Diabetes. PMID:33936085
Web resources facilitate drug discovery in treatment of COVID-19. PMID:33892145
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. PMID:33849055
Ranking the risk of animal-to-human spillover for newly discovered viruses. PMID:33822740
Analysis of human total antibody repertoires in TIF1γ autoantibody positive dermatomyositis. PMID:33772100
Delivery of cancer therapies by synthetic and bio-inspired nanovectors. PMID:33761944
Translational adaptation of human viruses to the tissues they infect. PMID:33730572
Proteasome-Generated cis-Spliced Peptides and Their Potential Role in CD8+ T Cell Tolerance. PMID:33717099
Modeling novel Anti-Viral peptides (AVPs) with in-silico docking simulations against corona virus. PMID:33680868
Host Defence RNases as Antiviral Agents against Enveloped Single Stranded RNA Viruses. PMID:33660566
Genome Sequence of a Minacovirus Strain from a Farmed Mink in The Netherlands. PMID:33632868
In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19. PMID:33619344
Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2. PMID:33610182
Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis. PMID:33512495
VPF-Class: Taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. PMID:33471063
Viruses in Extreme Environments, Current Overview, and Biotechnological Potential. PMID:33430116
Virxicon: A Lexicon Of Viral Sequences. PMID:33367605
The Missing Tailed Phages: Prediction of Small Capsid Candidates. PMID:33302408
DBCOVP: A database of coronavirus virulent glycoproteins. PMID:33276297
Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. PMID:33203352
Implications of TORCH Diseases in Retinal Development-Special Focus on Congenital Toxoplasmosis. PMID:33194824
Epitope similarity cannot explain the pre-formed T cell immunity towards structural SARS-CoV-2 proteins. PMID:33149224
A database resource and online analysis tools for coronaviruses on a historical and global scale. PMID:33009914
Biased Mutation and Selection in RNA Viruses. PMID:32986832
[Virological aspects and diagnosis of SARS-CoV-2 coronavirus]. PMID:32863557
Predicted therapeutic targets for COVID-19 disease by inhibiting SARS-CoV-2 and its related receptors. PMID:32835083
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae. PMID:32824044
Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design. PMID:32687176
Computational approaches in viral ecology. PMID:32670501
[SARS-CoV-2, COVID-19 and the eye: An update on published data]. PMID:32631687
Plant virus particles with various shapes as potential adjuvants. PMID:32587281
Approaches Based on Artificial Intelligence and the Internet of Intelligent Things to Prevent the Spread of COVID-19: Scoping Review. PMID:32584780
Host-Virus Arms Races Drive Elevated Adaptive Evolution in Viral Receptors. PMID:32493827
Genes that Control Vaccinia Virus Immunogenicity. PMID:32477596
VADR: validation and annotation of virus sequence submissions to GenBank. PMID:32448124
Investigating Bacteriophages Targeting the Opportunistic Pathogen Acinetobacter baumannii. PMID:32331271
ASFVdb: an integrative resource for genomic and proteomic analyses of African swine fever virus. PMID:32294195
A potential role for integrins in host cell entry by SARS-CoV-2. PMID:32130973
Dissimilation of synonymous codon usage bias in virus-host coevolution due to translational selection. PMID:32123323
Virus Metagenomics in Farm Animals: A Systematic Review. PMID:31963174
Evolutionary conserved compositional structures hidden in genomes of the foot-and-mouth disease virus and of the human rhinovirus. PMID:31719605
Genetic characterization of a novel picornavirus in Algerian bats: co-evolution analysis of bat-related picornaviruses. PMID:31673141
Sequence determinants of polyadenylation-mediated regulation. PMID:31530582
NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements. PMID:31527408
ZIKAVID-Zika virus infection database: a new platform to analyze the molecular impact of Zika virus infection. PMID:31512145
A Structure-Informed Atlas of Human-Virus Interactions. PMID:31474372
Resources to Discover and Use Short Linear Motifs in Viral Proteins. PMID:31427097
Virus structures constrain transmission modes. PMID:31358983
Conserved Secondary Structures in Viral mRNAs. PMID:31035717
Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. PMID:30763537
GLUE: a flexible software system for virus sequence data. PMID:30563445
Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes. PMID:30510593
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. PMID:30407573
Transmissibility of emerging viral zoonoses. PMID:30403733
Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes. PMID:30339683
An Approach to In Silico Dissection of Bacterial Intelligence Through Selective Genomic Tools. PMID:30013271
The analysis of genome composition and codon bias reveals distinctive patterns between avian and mammalian circoviruses which suggest a potential recombinant origin for Porcine circovirus 3. PMID:29958294
Morphologic and Genomic Analyses of New Isolates Reveal a Second Lineage of Cedratviruses. PMID:29695424
Complete sequence and diversity of a maize-associated Polerovirus in East Africa. PMID:29687187
A comprehensive and quantitative exploration of thousands of viral genomes. PMID:29624169
First insight into the viral community of the cnidarian model metaorganism Aiptasia using RNA-Seq data. PMID:29507840
Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan. PMID:29467725
Exploring autophagy with Gene Ontology. PMID:29455577
The dynamic intein landscape of eukaryotes. PMID:29416568
New Targets for Zika Virus Determined by Human-Viral Interactomic: A Bioinformatics Approach. PMID:29379794
Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs. PMID:29354101
Curcumin and Natural Derivatives Inhibit Ebola Viral Proteins: An In silico Approach. PMID:29333037
Exploring Viral Diversity in a Unique South African Soil Habitat. PMID:29311639
Variation in virome diversity in wild populations of Penaeus monodon (Fabricius 1798) with emphasis on pathogenic viruses. PMID:29291212
Multipartite viruses: adaptive trick or evolutionary treat? PMID:29263796
Varieties of charge distributions in coat proteins of ssRNA+ viruses. PMID:29182522
Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral". PMID:29029728
First Experimental Assessment of Protein Intrinsic Disorder Involvement in an RNA Virus Natural Adaptive Process. PMID:29029259
Viral communities of the human gut: metagenomic analysis of composition and dynamics. PMID:29026445
Therapeutics and Immunoprophylaxis Against Noroviruses and Rotaviruses: The Past, Present, and Future. PMID:28901254
A comparative review of viral entry and attachment during large and giant dsDNA virus infections. PMID:28866775
iLIR@viral: A web resource for LIR motif-containing proteins in viruses. PMID:28806134
Bacterial Virus Ontology; Coordinating across Databases. PMID:28545254
Overview on the Current Status of Zika Virus Pathogenesis and Animal Related Research. PMID:28444557
Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification. PMID:28344575
Zika Virus Diseases - The New Face of an Ancient Enemy as Global Public Health Emergency (2016): Brief Review and Recent Updates. PMID:28250906
The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection. PMID:28207819
SeeHaBITaT: A server on bioinformatics applications for Tospoviruses and other species. PMID:27354938
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. PMID:27087306
The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology. PMID:26958735
Therapeutic Use of Native and Recombinant Enteroviruses. PMID:26907330
Expanding our Understanding of the Seaweed Holobiont: RNA Viruses of the Red Alga Delisea pulchra. PMID:26779145
A phylogenomic data-driven exploration of viral origins and evolution. PMID:26601271
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. PMID:26554846
Virus tolerance and recovery from viral induced-symptoms in plants are associated with transcriptome reprograming. PMID:26358043
PhIN: A Protein Pharmacology Interaction Network Database. PMID:26225242
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. PMID:26215368
Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. PMID:26066760
Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses. PMID:25564866
Grouping of large populations into few CTL immune 'response-types' from influenza H1N1 genome analysis. PMID:25505972
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
Phages preying on Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis: past, present and future. PMID:25010767
The distribution and impact of viral lineages in domains of life. PMID:24817866
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. PMID:24792157
An allometric relationship between the genome length and virion volume of viruses. PMID:24672040
Detection of viral proteins in human cells lines by xeno-proteomics: elimination of the last valid excuse for not testing every cellular proteome dataset for viral proteins. PMID:24618588
Intracellular nucleic acid delivery by the supercharged dengue virus capsid protein. PMID:24339931
Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses. PMID:24223766
Marked variability in the extent of protein disorder within and between viral families. PMID:23620725
Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions. PMID:23224375
ViralZone: recent updates to the virus knowledge resource. PMID:23193299
Construction and characterization of virus-like particles: a review. PMID:23001867
Collagen-like proteins in pathogenic E. coli strains. PMID:22701585
Ongoing and future developments at the Universal Protein Resource. PMID:21051339
ViralZone: recent updates to the virus knowledge resource PubMed citations: 23.

23 articles citing: ViralZone: recent updates to the virus knowledge resource

Antisense technology as a potential strategy for the treatment of coronaviruses infection: With focus on COVID-19. PMID:35274474
Combinatorial Approaches for Cancer Treatment Using Oncolytic Viruses: Projecting the Perspectives through Clinical Trials Outcomes. PMID:34209981
Characterization of a novel group I F-specific RNA bacteriophage isolated from human stool. PMID:34050782
Virxicon: A Lexicon Of Viral Sequences. PMID:33367605
Comprehensive host-pathogen protein-protein interaction network analysis. PMID:32912135
Prediction of the Receptorome for the Human-Infecting Virome. PMID:32725480
COVID-19 and cardiovascular disease: from basic mechanisms to clinical perspectives. PMID:32690910
NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus. PMID:32090261
Resources to Discover and Use Short Linear Motifs in Viral Proteins. PMID:31427097
A Bioinformatics View of Glycan⁻Virus Interactions. PMID:31018588
Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes. PMID:30510593
DRodVir: A resource for exploring the virome diversity in rodents. PMID:28533016
viruSITE-integrated database for viral genomics. PMID:28025349
Gene overlapping and size constraints in the viral world. PMID:27209091
Linking Virus Genomes with Host Taxonomy. PMID:26938550
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. PMID:26215368
Databases for Microbiologists. PMID:26013493
Antiviral responses of arthropod vectors: an update on recent advances. PMID:25674592
NCBI viral genomes resource. PMID:25428358
VirHostNet 2.0: surfing on the web of virus/host molecular interactions data. PMID:25392406
DBatVir: the database of bat-associated viruses. PMID:24647629
Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins. PMID:24155369
http://dx.doi.org/10.1093/nar/gks1220

Tags:

Tags
More detailed information about this field from each metasource.

gene
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

genome
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: re3data.org
version: re3data.org: ViralZone; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMRM last accessed: 2022-11-04

host
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

viral sequence
metasource: Fairsharing.org
version: FAIRsharing.org: ViralZone; ViralZone; DOI: https://doi.org/10.25504/FAIRsharing.tppk10; Last edited: April 8, 2020, 5:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

viral genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

covid-19
metasource: re3data.org
version: re3data.org: ViralZone; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMRM last accessed: 2022-11-04

sars-cov-2
metasource: re3data.org
version: re3data.org: ViralZone; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMRM last accessed: 2022-11-04

proteomics
metasource: re3data.org
version: re3data.org: ViralZone; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMRM last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

virus
metasource: re3data.org
version: re3data.org: ViralZone; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMRM last accessed: 2022-11-04

virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

gene gene expression genome host viral sequence genomics viral genome covid-19 sars-cov-2 proteomics virus virology ontology and terminology

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