UniCarb-DB
Names
More detailed information about this field from each metasource.
UniCarb-DB
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
unicarb-db
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
Names
More detailed information about this field from each metasource.
UniCarb-DB
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
unicarb-db
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
Names
More detailed information about this field from each metasource.
UniCarb-DB
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
unicarb-db
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
UniCarb-DB is a curated database of glycomic mass spectrometry fragment data.
Description
More detailed information about this field from each metasource.
UniCarb-DB is a curated database of glycomic mass spectrometry fragment data.
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
A database of LC-MS structural data for oligosaccharides.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
Webpage:
http://www.unicarb-db.orgWebpage
More detailed information about this field from each metasource.
http://www.unicarb-db.org
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://unicarb-db.biomedicine.gu.se/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
Licence:
Name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND 3.0 )Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND 3.0 )
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nc-nd/3.0
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
UniCarb-DB: a database resource for glycomic discovery
PMID: 21398669
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository
PMID: 23624262
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Databases and Associated Tools for Glycomics and Glycoproteomics
PMID: 27743371
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/bioinformatics/btr137
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
Publications
More detailed information about this field from each metasource.
UniCarb-DB: a database resource for glycomic discovery
PMID: 21398669
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository
PMID: 23624262
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Databases and Associated Tools for Glycomics and Glycoproteomics
PMID: 27743371
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/bioinformatics/btr137
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
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UniCarb-DB: a database resource for glycomic discovery
PubMed citations: 45.
45 articles citing: UniCarb-DB: a database resource for glycomic discovery
Streptococcus oralis Employs Multiple Mechanisms of Salivary Mucin Binding That Differ Between Strains. PMID:35782137
Integrated N- and O-Glycomics of Acute Myeloid Leukemia (AML) Cell Lines. PMID:34831278
Bioinformatics in Immunoglobulin Glycosylation Analysis. PMID:34687011
Stimulated saliva composition in patients with cancer of the head and neck region. PMID:34627217
A single sulfatase is required to access colonic mucin by a gut bacterium. PMID:34616040
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications. PMID:33830329
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
Stress Impairs Skin Barrier Function and Induces α2-3 Linked N-Acetylneuraminic Acid and Core 1 O-Glycans on Skin Mucins in Atlantic Salmon, Salmo salar. PMID:33540792
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
Gill Mucus and Gill Mucin O-glycosylation in Healthy and Amebic Gill Disease-Affected Atlantic Salmon. PMID:33256221
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
Decrease of core 2 O-glycans on synovial lubricin in osteoarthritis reduces galectin-3 mediated crosslinking. PMID:32928962
Mapping human N-linked glycoproteins and glycosylation sites using mass spectrometry. PMID:31831916
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping. PMID:31065629
Effects of Size and Geographical Origin on Atlantic salmon, Salmo salar, Mucin O-Glycan Repertoire. PMID:30923042
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues. PMID:29321476
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma. PMID:28853212
Structural Diversity of Human Gastric Mucin Glycans. PMID:28461410
Mass Spectrometry-Based N-Glycomics of Colorectal Cancer. PMID:26690136
Reduced Mucin-7 (Muc7) Sialylation and Altered Saliva Rheology in Sjögren's Syndrome Associated Oral Dryness. PMID:26631508
A review of methods for interpretation of glycopeptide tandem mass spectral data. PMID:26612686
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
The O-Linked Glycome and Blood Group Antigens ABO on Mucin-Type Glycoproteins in Mucinous and Serous Epithelial Ovarian Tumors. PMID:26075384
Identification of O-glycan Structures from Chicken Intestinal Mucins Provides Insight into Campylobactor jejuni Pathogenicity. PMID:25776888
Clinical Glycomics Employing Graphitized Carbon Liquid Chromatography-Mass Spectrometry. PMID:25750456
EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data. PMID:25217575
GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination. PMID:25015990
Structural Identification of O-Linked Oligosaccharides Using Exoglycosidases and MSn Together with UniCarb-DB Fragment Spectra Comparison. PMID:24957756
Specific glycosylation of membrane proteins in epithelial ovarian cancer cell lines: glycan structures reflect gene expression and DNA methylation status. PMID:24855066
Toolboxes for a standardised and systematic study of glycans. PMID:24564482
Oligosaccharide analysis by mass spectrometry: a review of recent developments. PMID:24313268
UniCarbKB: building a knowledge platform for glycoproteomics. PMID:24234447
Avian influenza H5 hemagglutinin binds with high avidity to sialic acid on different O-linked core structures on mucin-type fusion proteins. PMID:24233973
Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS. PMID:23605685
Selected reaction monitoring to differentiate and relatively quantitate isomers of sulfated and unsulfated core 1 O-glycans from salivary MUC7 protein in rheumatoid arthritis. PMID:23457413
Using databases and web resources for glycomics research. PMID:23325765
The use of glycoinformatics in glycochemistry. PMID:23015842
Analytical glycobiology at high sensitivity: current approaches and directions. PMID:22945852
Human synovial lubricin expresses sialyl Lewis x determinant and has L-selectin ligand activity. PMID:22930755
Structural analysis of N- and O-glycans released from glycoproteins. PMID:22678433 -
Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository
PubMed citations: 26.
26 articles citing: Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository
Developments and perspectives in high-throughput protein glycomics: enabling the analysis of thousands of samples. PMID:35452121
Mass Spectrometry-Based Techniques to Elucidate the Sugar Code. PMID:34491038
Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis. PMID:34404781
Putting the pieces together: mapping the O-glycoproteome. PMID:34358979
The Human Salivary Proteome Wiki: A Community-Driven Research Platform. PMID:34032471
Evolutionary conservation of human ketodeoxynonulosonic acid production is independent of sialoglycan biosynthesis. PMID:33373330
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
State-of-the-Art Glycomics Technologies in Glycobiotechnology. PMID:33112988
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Glycan analysis of human neutrophil granules implicates a maturation-dependent glycosylation machinery. PMID:32665399
Glycomics and glycoproteomics of viruses: Mass spectrometry applications and insights toward structure-function relationships. PMID:32350911
Shotgun ion mobility mass spectrometry sequencing of heparan sulfate saccharides. PMID:32198425
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Updates to the Symbol Nomenclature for Glycans guidelines. PMID:31184695
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
Simple Method for De Novo Structural Determination of Underivatised Glucose Oligosaccharides. PMID:29615745
Glycosylation of extracellular vesicles: current knowledge, tools and clinical perspectives. PMID:29535851
Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues. PMID:29321476
Building a PGC-LC-MS N-glycan retention library and elution mapping resource. PMID:28905148
Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma. PMID:28853212
Xylose Migration During Tandem Mass Spectrometry of N-Linked Glycans. PMID:28127681
Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. PMID:26511985
Carbohydrates in Cyberspace. PMID:26113848
Clinical Glycomics Employing Graphitized Carbon Liquid Chromatography-Mass Spectrometry. PMID:25750456
Structural documentation of glycan epitopes: sequential mass spectrometry and spectral matching. PMID:24385394 -
Databases and Associated Tools for Glycomics and Glycoproteomics
PubMed citations: 16.
16 articles citing: Databases and Associated Tools for Glycomics and Glycoproteomics
Dextran as internal calibrant for N-glycan analysis by liquid chromatography coupled to ion mobility-mass spectrometry. PMID:35614231
Developments and perspectives in high-throughput protein glycomics: enabling the analysis of thousands of samples. PMID:35452121
Understanding the structure and composition of recalcitrant oligosaccharides in hydrolysate using high-throughput biotin-based glycome profiling and mass spectrometry. PMID:35169269
The glycosylation in SARS-CoV-2 and its receptor ACE2. PMID:34782609
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
How and why plants and human N-glycans are different: Insight from molecular dynamics into the "glycoblocks" architecture of complex carbohydrates. PMID:32874351
Potential Plasticity of the Mannoprotein Repertoire Associated to Mycobacterium tuberculosis Virulence Unveiled by Mass Spectrometry-Based Glycoproteomics. PMID:32443484
Breaking the Glyco-Code of HIV Persistence and Immunopathogenesis. PMID:30707400
Aberrant glycosylation and cancer biomarker discovery: a promising and thorny journey. PMID:30138110
Distinctive and Complementary MS2 Fragmentation Characteristics for Identification of Sulfated Sialylated N-Glycopeptides by nanoLC-MS/MS Workflow. PMID:29644550
Simple Method for De Novo Structural Determination of Underivatised Glucose Oligosaccharides. PMID:29615745
Glycosylation of extracellular vesicles: current knowledge, tools and clinical perspectives. PMID:29535851
The tumour glyco-code as a novel immune checkpoint for immunotherapy. PMID:29398707
Recent Advances in the Analysis of Complex Glycoproteins. PMID:28105826 - http://dx.doi.org/10.1093/bioinformatics/btr137
Tags:
Tags
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mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
carbohydrates
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:32.891645
Tags
More detailed information about this field from each metasource.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarb-DB; UniCarb-DB; DOI: https://doi.org/10.25504/FAIRsharing.8gzcwa; Last edited: Feb. 27, 2020, 8:54 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
carbohydrates
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:32.891645
mass spectrometry spectra carbohydrates
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