TropGENE DB
TropGENE DB is a database that manages genetic and genomic information about tropical crops studied by Cirad. The database is organised into crop specific modules.
Description
More detailed information about this field from each metasource.
TropGENE DB is a database that manages genetic and genomic information about tropical crops studied by Cirad. The database is organised into crop specific modules.
metasource: Fairsharing.orgversion: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
TropGENE DB is a database that manages genetic and genomic information about tropical crops. The database is organised into crop specific modules. Seven modules are presently online (Banana, Cocoa, Coconut, Cotton, Oil Palm, Rice and Sugarcane). Other modules are being developed. Each module includes data on genetic ressources (agro-morphological data, parentages, allelic diversity), information on molecular markers, genetics maps, result of QTL analyses, data from physical mapping, sequences, genes, as well as corresponding references. TropGENE DB interface has been designed to allow quick consultations as well as complex queries.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://tropgenedb.cirad.fr/Webpage
More detailed information about this field from each metasource.
http://tropgenedb.cirad.fr/
metasource: Fairsharing.orgversion: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
TropGENE-DB, a multi-tropical crop information system
PMID: 14681435
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
TropGeneDB, the multi-tropical crop information system updated and extended
PMID: 23161680
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gks1105
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
TropGENE-DB, a multi-tropical crop information system
PMID: 14681435
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
TropGeneDB, the multi-tropical crop information system updated and extended
PMID: 23161680
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gks1105
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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TropGENE-DB, a multi-tropical crop information system
PubMed citations: 14.
14 articles citing: TropGENE-DB, a multi-tropical crop information system
Phenomics, genomics of oil palm (Elaeis guineensis Jacq.): way forward for making sustainable and high yielding quality oil palm. PMID:33854286
Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content. PMID:33204934
Genomic resources for energy cane breeding in the post genomics era. PMID:31871586
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement. PMID:29503654
GraP: platform for functional genomics analysis of Gossypium raimondii. PMID:25982315
GnpIS: an information system to integrate genetic and genomic data from plants and fungi. PMID:23959375
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
TropGeneDB, the multi-tropical crop information system updated and extended. PMID:23161680
The GCP molecular marker toolkit, an instrument for use in breeding food security crops. PMID:22162942
MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family. PMID:19788737
Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. PMID:18973681
Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane. PMID:18196216
SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera. PMID:16796757
Genetic mapping in sugarcane, a high polyploid, using bi-parental progeny: identification of a gene controlling stalk colour and a new rust resistance gene. PMID:16552554 -
TropGeneDB, the multi-tropical crop information system updated and extended
PubMed citations: 10.
10 articles citing: TropGeneDB, the multi-tropical crop information system updated and extended
Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance. PMID:33483627
Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content. PMID:33204934
Root Response to Drought Stress in Rice (Oryza sativa L.). PMID:32098434
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement. PMID:30343386
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement. PMID:29503654
Database of predicted SCAR markers in five fruit and three vegetable crops. PMID:27019446
Root traits contributing to plant productivity under drought. PMID:24204374
CottonGen: a genomics, genetics and breeding database for cotton research. PMID:24203703
The banana genome hub. PMID:23707967 - http://dx.doi.org/10.1093/nar/gks1105
Tags:
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: TropGENE DB; TropGENE DB; DOI: https://doi.org/10.25504/FAIRsharing.bsawmk; Last edited: April 26, 2021, 8:46 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene genome genotype plant plant
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