R3TM0F last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

supertarget
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

Other names: supertarget

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Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins.

Webpage:

http://bioinformatics.charite.de/supertarget

Licence:

Name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
URL: https://creativecommons.org/licenses/by-nc-sa/4.0/

Publications:

Publications
More detailed information about this field from each metasource.

SuperTarget and Matador: resources for exploring drug-target relationships
PMID: 17942422
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

SuperTarget goes quantitative: update on drug-target interactions
PMID: 22067455
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

http://dx.doi.org/10.1093/nar/GKR973
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

SuperTarget and Matador: resources for exploring drug-target relationships PubMed citations: 213.

213 articles citing: SuperTarget and Matador: resources for exploring drug-target relationships

Virtual screening of Indonesian herbal compounds as COVID-19 supportive therapy: machine learning and pharmacophore modeling approaches. PMID:35922786
NTD-DR: Nonnegative tensor decomposition for drug repositioning. PMID:35862409
Predicting compound-protein interaction using hierarchical graph convolutional networks. PMID:35862351
Does adding the drug-drug similarity to drug-target interaction prediction methods make a noticeable improvement in their efficiency? PMID:35836119
Sequence-based drug-target affinity prediction using weighted graph neural networks. PMID:35715739
RoFDT: Identification of Drug-Target Interactions from Protein Sequence and Drug Molecular Structure Using Rotation Forest. PMID:35625469
MSPEDTI: Prediction of Drug-Target Interactions via Molecular Structure with Protein Evolutionary Information. PMID:35625468
A Method of Optimizing Weight Allocation in Data Integration Based on Q-Learning for Drug-Target Interaction Prediction. PMID:35356288
Chemogenomic Approaches for Revealing Drug Target Interactions in Drug Discovery. PMID:35283667
Sequence-based prediction of protein binding regions and drug-target interactions. PMID:35135622
A community challenge for a pancancer drug mechanism of action inference from perturbational profile data. PMID:35106508
The Discovery of New Drug-Target Interactions for Breast Cancer Treatment. PMID:34946556
EmbedDTI: Enhancing the Molecular Representations via Sequence Embedding and Graph Convolutional Network for the Prediction of Drug-Target Interaction. PMID:34944427
NeuRank: learning to rank with neural networks for drug-target interaction prediction. PMID:34836495
A unified drug-target interaction prediction framework based on knowledge graph and recommendation system. PMID:34811351
DaiCee: A database for anti-cancer compounds with targets and side effect profiles. PMID:34803258
Drug-target interaction prediction using unifying of graph regularized nuclear norm with bilinear factorization. PMID:34789169
PPDTS: Predicting potential drug-target interactions based on network similarity. PMID:34783172
Artificial intelligence for the discovery of novel antimicrobial agents for emerging infectious diseases. PMID:34748992
DeepStack-DTIs: Predicting Drug-Target Interactions Using LightGBM Feature Selection and Deep-Stacked Ensemble Classifier. PMID:34731411
Comprehensive Survey of Recent Drug Discovery Using Deep Learning. PMID:34576146
DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning. PMID:34551818
Prediction of Drug-Target Interactions by Combining Dual-Tree Complex Wavelet Transform with Ensemble Learning Method. PMID:34500792
DTI-HeNE: a novel method for drug-target interaction prediction based on heterogeneous network embedding. PMID:34479477
Machine learning methods, databases and tools for drug combination prediction. PMID:34477201
SAG-DTA: Prediction of Drug-Target Affinity Using Self-Attention Graph Network. PMID:34445696
Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach. PMID:34440610
Multimorbidity prediction using link prediction. PMID:34385524
Machine learning approaches for drug combination therapies. PMID:34368832
Potential drugs against COVID-19 revealed by gene expression profile, molecular docking and molecular dynamic simulation. PMID:34306168
A protein interactions map of multiple organ systems associated with COVID-19 disease. PMID:34261299
Predicting Drug-Target Interactions Based on the Ensemble Models of Multiple Feature Pairs. PMID:34202954
Applications of artificial intelligence to drug design and discovery in the big data era: a comprehensive review. PMID:34110579
Decoding empagliflozin's molecular mechanism of action in heart failure with preserved ejection fraction using artificial intelligence. PMID:34103605
Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions. PMID:34045744
A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning. PMID:33925568
A computational method for drug sensitivity prediction of cancer cell lines based on various molecular information. PMID:33914775
AutoDTI++: deep unsupervised learning for DTI prediction by autoencoders. PMID:33879050
Accelerate Training of Restricted Boltzmann Machines via Iterative Conditional Maximum Likelihood Estimation. PMID:33859774
Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Logistic Matrix Factorization. PMID:33855072
Application of network link prediction in drug discovery. PMID:33845763
A review on compound-protein interaction prediction methods: Data, format, representation and model. PMID:33841755
Editor's introduction to this issue (G&I 19:1, 2021). PMID:33840165
PreDTIs: prediction of drug-target interactions based on multiple feature information using gradient boosting framework with data balancing and feature selection techniques. PMID:33709119
Patient-Specific Network for Personalized Breast Cancer Therapy with Multi-Omics Data. PMID:33670375
Drug-Target Interaction Prediction Based on Adversarial Bayesian Personalized Ranking. PMID:33628808
BOW-GBDT: A GBDT Classifier Combining With Artificial Neural Network for Identifying GPCR-Drug Interaction Based on Wordbook Learning From Sequences. PMID:33598456
SSnet: A Deep Learning Approach for Protein-Ligand Interaction Prediction. PMID:33573266
A Deep Learning-Based Approach for Identifying the Medicinal Uses of Plant-Derived Natural Compounds. PMID:33519445
An efficient computational method for predicting drug-target interactions using weighted extreme learning machine and speed up robot features. PMID:33472664
Artificial Intelligence in Drug Discovery: A Comprehensive Review of Data-driven and Machine Learning Approaches. PMID:33437151
DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques. PMID:33431036
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
Bioinformatics: new tools and applications in life science and personalized medicine. PMID:33404829
CovMulNet19, Integrating Proteins, Diseases, Drugs, and Symptoms: A Network Medicine Approach to COVID-19. PMID:33274348
PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion. PMID:33075523
Finding New Molecular Targets of Familiar Natural Products Using In Silico Target Prediction. PMID:32993084
Ensemble Learning Prediction of Drug-Target Interactions Using GIST Descriptor Extracted from PSSM-Based Evolutionary Information. PMID:32908888
Prediction of drug-target interactions from multi-molecular network based on LINE network representation method. PMID:32894154
Drug-target interactions prediction using marginalized denoising model on heterogeneous networks. PMID:32703151
Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling. PMID:32663517
An up-to-date overview of computational polypharmacology in modern drug discovery. PMID:32452701
Drug repositioning or target repositioning: A structural perspective of drug-target-indication relationship for available repurposed drugs. PMID:32419905
DLS: A Link Prediction Method Based on Network Local Structure for Predicting Drug-Protein Interactions. PMID:32391341
Identifying GPCR-drug interaction based on wordbook learning from sequences. PMID:32312232
In Silico Discovery of Candidate Drugs against Covid-19. PMID:32268515
Modified linear regression predicts drug-target interactions accurately. PMID:32251481
A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network. PMID:32183788
Neural networks for protein structure and function prediction and dynamic analysis. PMID:32166610
FRnet-DTI: Deep convolutional neural network for drug-target interaction prediction. PMID:32154410
Automated recognition of functional compound-protein relationships in literature. PMID:32126064
A Novel Approach for Drug-Target Interactions Prediction Based on Multimodal Deep Autoencoder. PMID:32047432
Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. PMID:31950972
Drug-target interaction prediction using Multi Graph Regularized Nuclear Norm Minimization. PMID:31945078
PTS: a pharmaceutical target seeker. PMID:31725865
A Multi-Label Learning Framework for Drug Repurposing. PMID:31505805
Drug-Target Interaction Prediction Based on Drug Fingerprint Information and Protein Sequence. PMID:31430892
Comparison of Target Features for Predicting Drug-Target Interactions by Deep Neural Network Based on Large-Scale Drug-Induced Transcriptome Data. PMID:31382356
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
Validation strategies for target prediction methods. PMID:31220208
DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences. PMID:31199797
Revealing Drug-Target Interactions with Computational Models and Algorithms. PMID:31052598
Extended Multitarget Pharmacology of Anticancer Drugs. PMID:31025863
Network-based characterization of drug-protein interaction signatures with a space-efficient approach. PMID:30953486
CSgator: an integrated web platform for compound set analysis. PMID:30830479
NRLMFβ: Beta-distribution-rescored neighborhood regularized logistic matrix factorization for improving the performance of drug-target interaction prediction. PMID:30793050
MDAD: A Special Resource for Microbe-Drug Associations. PMID:30581775
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data. PMID:30567491
Methods for Discovering and Targeting Druggable Protein-Protein Interfaces and Their Application to Repurposing. PMID:30547433
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs. PMID:30311095
Deep learning-based transcriptome data classification for drug-target interaction prediction. PMID:30255785
Machine Learning for Drug-Target Interaction Prediction. PMID:30200333
Probing the chemical-biological relationship space with the Drug Target Explorer. PMID:30128806
Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence. PMID:30096807
Phenotype-oriented network analysis for discovering pharmacological effects of natural compounds. PMID:30076354
KampoDB, database of predicted targets and functional annotations of natural medicines. PMID:30046160
In silico identification of drug target pathways in breast cancer subtypes using pathway cross-talk inhibition. PMID:29871693
Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error. PMID:29808027
Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches. PMID:29783926
Docking-based inverse virtual screening: methods, applications, and challenges. PMID:29577065
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. PMID:29420684
In silico profiling of systemic effects of drugs to predict unexpected interactions. PMID:29371651
Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection. PMID:29325153
A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders. PMID:29320554
Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures. PMID:29317676
iDTI-ESBoost: Identification of Drug Target Interaction Using Evolutionary and Structural Features with Boosting. PMID:29255285
Drug-Target Interaction Prediction through Label Propagation with Linear Neighborhood Information. PMID:29186828
DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. PMID:29186331
Overcoming Obstacles to Drug Repositioning in Japan. PMID:29075191
Drug repurposing in idiopathic pulmonary fibrosis filtered by a bioinformatics-derived composite score. PMID:28974751
In silico prediction of drug-target interaction networks based on drug chemical structure and protein sequences. PMID:28894115
An Ameliorated Prediction of Drug-Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features. PMID:28813000
Screening drug-target interactions with positive-unlabeled learning. PMID:28808275
A simple mathematical approach to the analysis of polypharmacology and polyspecificity data. PMID:28690829
Prediction of Drug-Target Interaction Networks from the Integration of Protein Sequences and Drug Chemical Structures. PMID:28678206
Screening the Medicines for Malaria Venture Pathogen Box across Multiple Pathogens Reclassifies Starting Points for Open-Source Drug Discovery. PMID:28674055
Large-Scale Prediction of Drug-Target Interaction: a Data-Centric Review. PMID:28577120
Network mirroring for drug repositioning. PMID:28539121
Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory. PMID:28453640
Imatinib and spironolactone suppress hepcidin expression. PMID:28385785
CATTLE (CAncer treatment treasury with linked evidence): An integrated knowledge base for personalized oncology research and practice. PMID:28296354
SELF-BLM: Prediction of drug-target interactions via self-training SVM. PMID:28192537
Link prediction in drug-target interactions network using similarity indices. PMID:28095781
Predicting drug-target interactions by dual-network integrated logistic matrix factorization. PMID:28079135
Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics. PMID:28071740
Computational polypharmacology: a new paradigm for drug discovery. PMID:28067061
A comprehensive map of molecular drug targets. PMID:27910877
A machine-learned computational functional genomics-based approach to drug classification. PMID:27695919
Inferences of drug responses in cancer cells from cancer genomic features and compound chemical and therapeutic properties. PMID:27645580
A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. PMID:27467583
BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions. PMID:27330567
DrugQuest - a text mining workflow for drug association discovery. PMID:27295093
MBROLE 2.0-functional enrichment of chemical compounds. PMID:27084944
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction. PMID:26987649
DASPfind: new efficient method to predict drug-target interactions. PMID:26985240
Drug Repositioning for Cancer Therapy Based on Large-Scale Drug-Induced Transcriptional Signatures. PMID:26954019
Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction. PMID:26872142
Improved prediction of drug-target interactions using regularized least squares integrating with kernel fusion technique. PMID:26851083
A multiple kernel learning algorithm for drug-target interaction prediction. PMID:26801218
Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner. PMID:26684652
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. PMID:26590256
PharmDB-K: Integrated Bio-Pharmacological Network Database for Traditional Korean Medicine. PMID:26555441
Systematic analysis of the associations between adverse drug reactions and pathways. PMID:26495310
2D and 3D similarity landscape analysis identifies PARP as a novel off-target for the drug Vatalanib. PMID:26403354
An eigenvalue transformation technique for predicting drug-target interaction. PMID:26350590
Elucidating Compound Mechanism of Action by Network Perturbation Analysis. PMID:26186195
Large-scale Direct Targeting for Drug Repositioning and Discovery. PMID:26155766
Deciding when to stop: efficient experimentation to learn to predict drug-target interactions. PMID:26153434
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case. PMID:26100720
Building a virtual ligand screening pipeline using free software: a survey. PMID:26094053
Improving compound-protein interaction prediction by building up highly credible negative samples. PMID:26072486
Determining similarity of scientific entities in annotation datasets. PMID:25725057
Text mining in cancer gene and pathway prioritization. PMID:25392685
Cancer in silico drug discovery: a systems biology tool for identifying candidate drugs to target specific molecular tumor subtypes. PMID:25349306
Adverse drug reaction prediction using scores produced by large-scale drug-protein target docking on high-performance computing machines. PMID:25191698
DINIES: drug-target interaction network inference engine based on supervised analysis. PMID:24838565
ProTox: a web server for the in silico prediction of rodent oral toxicity. PMID:24838562
Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays. PMID:24805064
ASDCD: antifungal synergistic drug combination database. PMID:24475134
STITCH 4: integration of protein-chemical interactions with user data. PMID:24293645
Exploring drug-target interaction networks of illicit drugs. PMID:24268016
Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data. PMID:24244318
Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines. PMID:24239728
Computational methods for drug design and discovery: focus on China. PMID:24035675
Open-source approaches for the repurposing of existing or failed candidate drugs: learning from and applying the lessons across diseases. PMID:23966771
Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile. PMID:23840562
Predicting drug-target interactions using restricted Boltzmann machines. PMID:23812976
Network pharmacology: a new approach for chinese herbal medicine research. PMID:23762149
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
Systematic identification of proteins that elicit drug side effects. PMID:23632385
Remodeling the proteostasis network to rescue glucocerebrosidase variants by inhibiting ER-associated degradation and enhancing ER folding. PMID:23620750
Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles. PMID:23530504
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
Chapter 3: Small molecules and disease. PMID:23300405
Identification of pharmacological targets in amyotrophic lateral sclerosis through genomic analysis of deregulated genes and pathways. PMID:23204922
Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction. PMID:23146171
Relating drug-protein interaction network with drug side effects. PMID:22962476
DTome: a web-based tool for drug-target interactome construction. PMID:22901092
Toward rational fragment-based lead design without 3D structures. PMID:22889313
Assessing drug target association using semantic linked data. PMID:22859915
A strategy based on protein-protein interface motifs may help in identifying drug off-targets. PMID:22817115
INDI: a computational framework for inferring drug interactions and their associated recommendations. PMID:22806140
Public domain databases for medicinal chemistry. PMID:22731701
Relax with CouchDB--into the non-relational DBMS era of bioinformatics. PMID:22609849
Prediction of drug-target interactions and drug repositioning via network-based inference. PMID:22589709
Drug repositioning for personalized medicine. PMID:22494857
DetoxiProt: an integrated database for detoxification proteins. PMID:22369658
STITCH 3: zooming in on protein-chemical interactions. PMID:22075997
SuperTarget goes quantitative: update on drug-target interactions. PMID:22067455
Network neighbors of drug targets contribute to drug side-effect similarity. PMID:21765950
PREDICT: a method for inferring novel drug indications with application to personalized medicine. PMID:21654673
Combinations of protein-chemical complex structures reveal new targets for established drugs. PMID:21573205
Discovering the targets of drugs via computational systems biology. PMID:21566122
Structure-based systems biology for analyzing off-target binding. PMID:21292475
HIT: linking herbal active ingredients to targets. PMID:21097881
PROMISCUOUS: a database for network-based drug-repositioning. PMID:21071407
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. PMID:21059682
CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge. PMID:20952398
Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis. PMID:20807400
Role of systems pharmacology in understanding drug adverse events. PMID:20803507
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. PMID:20689020
Targeting breast cancer stem cells. PMID:20599450
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. PMID:20529913
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. PMID:20478034
iPHACE: integrative navigation in pharmacological space. PMID:20156991
STITCH 2: an interaction network database for small molecules and proteins. PMID:19897548
Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins. PMID:19785456
Supervised prediction of drug-target interactions using bipartite local models. PMID:19605421
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery. PMID:19478004
Generating genome-scale candidate gene lists for pharmacogenomics. PMID:19369935
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. PMID:18586719
SuperPred: drug classification and target prediction. PMID:18499712
STITCH: interaction networks of chemicals and proteins. PMID:18084021
SuperTarget goes quantitative: update on drug-target interactions PubMed citations: 68.

68 articles citing: SuperTarget goes quantitative: update on drug-target interactions

Chemogenomic Approaches for Revealing Drug Target Interactions in Drug Discovery. PMID:35283667
Deciphering the involvement of iron targets in colorectal cancer: a network biology approach. PMID:35173863
Combining Human Genetics of Multiple Sclerosis with Oxidative Stress Phenotype for Drug Repositioning. PMID:34959343
Thalidomide Exerts Anti-Inflammatory Effects in Cutaneous Lupus by Inhibiting the IRF4/NF-ҡB and AMPK1/mTOR Pathways. PMID:34944673
Methods to Develop an in silico Clinical Trial: Computational Head-to-Head Comparison of Lisdexamfetamine and Methylphenidate. PMID:34803764
Natural products for infectious microbes and diseases: an overview of sources, compounds, and chemical diversities. PMID:34705221
Accelerating antibiotic discovery through artificial intelligence. PMID:34504303
Prediction of Drug-Target Interactions by Combining Dual-Tree Complex Wavelet Transform with Ensemble Learning Method. PMID:34500792
A computational study on hydroxychloroquine binding to target proteins related to SARS-COV-2 infection. PMID:34458558
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Evolving scenario of big data and Artificial Intelligence (AI) in drug discovery. PMID:34159484
An Ensemble Learning-Based Method for Inferring Drug-Target Interactions Combining Protein Sequences and Drug Fingerprints. PMID:33987446
Application of systems biology-based in silico tools to optimize treatment strategy identification in Still's disease. PMID:33892792
A review on compound-protein interaction prediction methods: Data, format, representation and model. PMID:33841755
Head to head evaluation of second generation ALK inhibitors brigatinib and alectinib as first-line treatment for ALK+ NSCLC using an in silico systems biology-based approach. PMID:33659043
Review on Databases and Bioinformatic Approaches on Pharmacogenomics of Adverse Drug Reactions. PMID:33469342
Artificial Intelligence in Drug Discovery: A Comprehensive Review of Data-driven and Machine Learning Approaches. PMID:33437151
Identification of afzelin potential targets in inhibiting triple-negative breast cancer cell migration using reverse docking. PMID:33283065
PROMISCUOUS 2.0: a resource for drug-repositioning. PMID:33196798
Finding New Molecular Targets of Familiar Natural Products Using In Silico Target Prediction. PMID:32993084
Systems Biology Approaches to Understanding the Human Immune System. PMID:32849587
Exploring Drug Treatment Patterns Based on the Action of Drug and Multilayer Network Model. PMID:32708644
Towards the routine use of in silico screenings for drug discovery using metabolic modelling. PMID:32369553
Exploration of databases and methods supporting drug repurposing: a comprehensive survey. PMID:32055842
In-silico simulated prototype-patients using TPMS technology to study a potential adverse effect of sacubitril and valsartan. PMID:32053711
CMTTdb: the cancer molecular targeted therapy database. PMID:31930068
Untargeted Metabolomics Study of the In Vitro Anti-Hepatoma Effect of Saikosaponin d in Combination with NRP-1 Knockdown. PMID:30978940
MDAD: A Special Resource for Microbe-Drug Associations. PMID:30581775
The BioGRID interaction database: 2019 update. PMID:30476227
Network-Based Methods for Prediction of Drug-Target Interactions. PMID:30356768
Machine Learning for Drug-Target Interaction Prediction. PMID:30200333
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
From gene networks to drugs: systems pharmacology approaches for AUD. PMID:29497781
Investigating the Mechanisms of Action of Depside Salt from Salvia miltiorrhiza Using Bioinformatic Analysis. PMID:29348768
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. PMID:29220444
Evidence-Based Precision Oncology with the Cancer Targetome. PMID:28964549
Large-scale cross-species chemogenomic platform proposes a new drug discovery strategy of veterinary drug from herbal medicines. PMID:28915268
An Ameliorated Prediction of Drug-Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features. PMID:28813000
Large-Scale Prediction of Drug-Target Interaction: a Data-Centric Review. PMID:28577120
Open Targets: a platform for therapeutic target identification and validation. PMID:27899665
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction. PMID:27893735
Bioinformatics and Drug Discovery. PMID:27848897
Chemogenomics knowledgebase and systems pharmacology for hallucinogen target identification-Salvinorin A as a case study. PMID:27810775
DrugCentral: online drug compendium. PMID:27789690
Significant impact of miRNA-target gene networks on genetics of human complex traits. PMID:26927695
Identification of potential drug targets by subtractive genome analysis of Escherichia coli O157:H7: an in silico approach. PMID:26677339
Computational and Pharmacological Target of Neurovascular Unit for Drug Design and Delivery. PMID:26579539
PDID: database of molecular-level putative protein-drug interactions in the structural human proteome. PMID:26504143
2D and 3D similarity landscape analysis identifies PARP as a novel off-target for the drug Vatalanib. PMID:26403354
Super Natural II--a database of natural products. PMID:25300487
Curation and analysis of multitargeting agents for polypharmacological modeling. PMID:25133604
SuperPred: update on drug classification and target prediction. PMID:24878925
ProTox: a web server for the in silico prediction of rodent oral toxicity. PMID:24838562
Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network. PMID:24618344
mVOC: a database of microbial volatiles. PMID:24311565
DGIdb: mining the druggable genome. PMID:24122041
Functional genomics of Plasmodium falciparum using metabolic modelling and analysis. PMID:23793264
A semi-supervised method for drug-target interaction prediction with consistency in networks. PMID:23667553
PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery. PMID:23548981
Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles. PMID:23530504
Drug target predictions based on heterogeneous graph inference. PMID:23424111
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
Polypharmacology: drug discovery for the future. PMID:23272792
NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. PMID:23203867
StreptomeDB: a resource for natural compounds isolated from Streptomyces species. PMID:23193280
SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations. PMID:23143269
Dr. PIAS 2.0: an update of a database of predicted druggable protein-protein interactions. PMID:23060433
Public domain databases for medicinal chemistry. PMID:22731701
http://dx.doi.org/10.1093/nar/GKR973

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anatomical therapeutic chemical code
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

chemical structure
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

drug
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

enzyme commission number
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

sequence similarity
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

target
metasource: Fairsharing.org
version: FAIRsharing.org: SuperTarget; SuperTarget; DOI: https://doi.org/10.25504/FAIRsharing.se4zhk; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

drugs and drug design
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

biomedicine
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

biomolecule
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

biotechnology
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

cheminformatics
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

compound
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

drug metabolism
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

molecular biology
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

pathway
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

pharmaceutical
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

pharmacology
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

protein-protein interaction
metasource: re3data.org
version: re3data.org: SuperTarget; editing status 2018-08-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TM0F last accessed: 2022-11-04

endocrinology and metabolism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

medicinal chemistry
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:54.526649

anatomical therapeutic chemical code chemical structure drug enzyme commission number gene ontology enrichment sequence similarity target molecular biology drug biomedicine biomolecule biotechnology cheminformatics compound drug metabolism molecular biology pathway pharmaceutical pharmacology protein-protein interaction endocrinology and metabolism small molecule molecular interactions, pathways and networks medicinal chemistry

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