STIFDB2

PRODORIC2

TrSDB

Transcription factor database

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

Factorbook

Human transcription factor binding data from ChIP-seq

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

TTSMI

Triplex Target DNA Sites in the human genome

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

TRANSFAC®

The TRANSFAC® database has been constructed to model the interaction of eukaryotic transcription factors with their DNA-binding sites and how this affects gene expression. At its core are the three ta ...

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

CMGSDB

Computational models for gene silencing in C. elegans

RegPrecise

Predicted regulons in prokaryotic genomes

Plant Stress Ontology

This ontology describes biotic and abiotic stresses that a plant may encounter.

LenVarDB

Database of length variantion in protein domains