Tag: data acquisition

CONSORT encompasses various initiatives developed by the CONSORT Group to alleviate the problems arising from inadequate reporting of randomized controlled trials (RCTs). The 2010 guideline is intended to improve the reporting of parallel-group rando ...

Genome Aggregation Database (gnomAD) - browser that aggregates exome and whole-genome sequencing data from a wide variety of large-scale sequencing projects. It enables search of genetic variation information by gene, variant or region.

The main CONSORT Statement is based on the "standard" two-group parallel design. However, there are several variations to the standard trial methodology, including different design aspects (e.g., cluster), interventions (e.g., herbals) and data (e.g. ...

The main CONSORT Statement is based on the "standard" two-group parallel design. There are several variations to the standard trial methodology, including different design aspects (e.g., cluster), interventions (e.g., herbals) and data (e.g., harms). ...

EDAM (originally from “EMBRACE Data and Methods”) is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics.

Database developed for functional prediction and annotation of all potential non-synonymous single-nucleotide variants (nsSNVs) and splice-site variants (ssSNVs) in the human genome. It also facilitates the steps of filtering and prioritizing SNVs fr ...

CDASH establishes a standard way to collect data in a similar way across studies and sponsors so that data collection formats and structures provide clear traceability of submission data into the Study Data Tabulation Model (SDTM), delivering more tr ...

dbSUPER is the first integrated and interactive database of super-enhancers, which contains 82234 super-enhancers in 102 human and 25 mouse tissue/cell types.

LAB provides a standard model for the acquisition and exchange of laboratory data, primarily between labs and sponsors or CROs. The LAB standard was specifically designed for the interchange of lab data acquired in clinical trials.

Minimal Information for Neural ElectroMagnetic Ontologies (MINEMO; formerly "MIEME" or "MINIerp") is the minimal set of experiment meta-data that is required for datasets that are used in the NEMO project. MINEMO extends MINI (Minimal Information for ...

HyperCLDB is the hypertext on cell culture availability built from the Cell Line Data Base of the Interlab Project. As for February 2017 it features 6,643 lines, 6,301 of which are available for distribution. From these, 4,921 are human cell lines (1 ...

A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project

This catalogue is intended to facilitate the discovery of samples and samples data from Rare Diseases biobanks. It also provides information about sample collections and studies done on the registered samples.

Free knowledge database project hosted by Wikimedia and edited by volunteers.

A community resource of quantitative mass spectrometry-based proteomics datasets. MassIVE.quant is an extension of the Mass Spectrometry Interactive Virtual Environment (MassIVE) to provide the opportunity for large-scale deposition of data from qua ...

Biomedical data repositories such as the Gene Expression Omnibus (GEO) enable the search and discovery of relevant biomedical digital data objects. Similarly, resources such as OMICtools index bioinformatics tools that can extract knowledge from thes ...

Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome.

Cloud-based platform to manage and share antibody-based single-cell research.

Easy access to results of publications and genetic or drug information in other databases that are relevant to a clinical trials.

2D convolutional neural network model for identifying families of efflux proteins in transporters.

Provides simple-to-use REST web services to query/retrieve variant annotation data, aggregated from many popular data resources.

Widely used open-access database of curated, non-redundant transcription factor binding profiles. Currently, data from JASPAR can be retrieved as flat files or by using programming language-specific interfaces. Here, we present a programming language ...

EnzymeML is a free and open standard XML-based interchange format for data on enzyme-catalyzed reactions. The purpose of EnzymeML is to store and exchange enzyme kinetics data between instruments, software tools, and databases. EnzymeML will allow sc ...