MEGARes 2.0
a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data. MEGAResFrom MEG, the Microbial Ecology Group. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. The MEGARes database contains sequence data for approximately 8,000 hand-curated antimicrobial resistance genes accompanied by an annotation structure that is optimized for use with high throughput sequencing. The acyclical annotation graph of MEGARes allows for accurate, count-based, hierarchical statistical analysis of resistance at the population level, much like microbiome analysis, and is also designed to be used as a training database for the creation of statistical classifiers (Figure 1).
Description
More detailed information about this field from each metasource.
a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data. MEGAResFrom MEG, the Microbial Ecology Group. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. The MEGARes database contains sequence data for approximately 8,000 hand-curated antimicrobial resistance genes accompanied by an annotation structure that is optimized for use with high throughput sequencing. The acyclical annotation graph of MEGARes allows for accurate, count-based, hierarchical statistical analysis of resistance at the population level, much like microbiome analysis, and is also designed to be used as a training database for the creation of statistical classifiers (Figure 1).
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
Webpage:
https://megares.meglab.orgWebpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
PMID: 31722416
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
Publications
More detailed information about this field from each metasource.
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
PMID: 31722416
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
-
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
PubMed citations: 46.
46 articles citing: MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
Metagenomics-enabled microbial surveillance. PMID:35365786
Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome. PMID:35365748
Review and Comparison of Antimicrobial Resistance Gene Databases. PMID:35326803
PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach. PMID:35215934
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. PMID:35212354
Genomic Analysis of ESBL-Producing E. coli in Wildlife from North-Eastern Germany. PMID:35203726
Human gut commensal bacterium Ruminococcus species FMB-CY1 completely degrades the granules of resistant starch. PMID:35186353
Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca. PMID:35170999
Antibacterial Efficacy of Liposomal Formulations Containing Tobramycin and N-Acetylcysteine against Tobramycin-Resistant Escherichia coli, Klebsiella pneumoniae, and Acinetobacter baumannii. PMID:35057026
A catalogue of 1,167 genomes from the human gut archaeome. PMID:34969981
Investigating the dynamics of Salmonella contamination in integrated poultry companies using a whole genome sequencing approach. PMID:34953378
First report from Bangladesh on genetic diversity of multidrug-resistant Pasteurella multocida type B:2 in fowl cholera. PMID:34840474
Comparative pangenomic analyses and biotechnological potential of cocoa-related Acetobacter senegalensis strains. PMID:34817761
Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa. PMID:34817240
Comparing gut resistome composition among patients with acute Campylobacter infections and healthy family members. PMID:34785751
Flavobacterium flabelliforme sp. nov. and Flavobacterium geliluteum sp. nov., Two Multidrug-Resistant Psychrotrophic Species Isolated From Antarctica. PMID:34745033
Burkholderiaceae and Multidrug Resistance Genes Are Key Players in Resistome Development in a Germfree Soil Model. PMID:34726494
Comparative Genomics of Mycobacterium avium Complex Reveals Signatures of Environment-Specific Adaptation and Community Acquisition. PMID:34665012
Whole Genome Sequencing of Extended-Spectrum- and AmpC- β-Lactamase-Positive Enterobacterales Isolated From Spinach Production in Gauteng Province, South Africa. PMID:34659162
virusMED: an atlas of hotspots of viral proteins. PMID:34614039
Microbiome signature and diversity regulates the level of energy production under anaerobic condition. PMID:34611238
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter. PMID:34593021
Fast and exact quantification of motif occurrences in biological sequences. PMID:34537012
Accelerating antibiotic discovery through artificial intelligence. PMID:34504303
KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data. PMID:34447942
Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation. PMID:34402648
Beating the Bio-Terror Threat with Rapid Antimicrobial Susceptibility Testing. PMID:34361970
Treat Me Well or Will Resist: Uptake of Mobile Genetic Elements Determine the Resistome of Corynebacterium striatum. PMID:34299116
Long-read sequencing revealed cooccurrence, host range, and potential mobility of antibiotic resistome in cow feces. PMID:34161269
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. PMID:34135355
rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. PMID:34110280
Mobile Oxazolidinone Resistance Genes in Gram-Positive and Gram-Negative Bacteria. PMID:34076490
Re-Emergence of Salmonellosis in Hog Farms: Outbreak and Bacteriological Characterization. PMID:33925758
Characterization of the first vaginal Lactobacillus crispatus genomes isolated in Brazil. PMID:33854845
ResistoXplorer: a web-based tool for visual, statistical and exploratory data analysis of resistome data. PMID:33796850
HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes. PMID:33557954
Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation. PMID:33552147
Metagenomics of antimicrobial and heavy metal resistance in the cecal microbiome of fattening pigs raised without antibiotics. PMID:33547058
Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview. PMID:33537056
Metagenomic Quantification of Genes with Internal Standards. PMID:33531401
A Cross-Sectional Study of Dairy Cattle Metagenomes Reveals Increased Antimicrobial Resistance in Animals Farmed in a Heavy Metal Contaminated Environment. PMID:33304338
Genetic and Virulence Characteristics of a Hybrid Atypical Enteropathogenic and Uropathogenic Escherichia coli (aEPEC/UPEC) Strain. PMID:33134184
Two Lineages of Pseudomonas aeruginosa Filamentous Phages: Structural Uniformity over Integration Preferences. PMID:32658245
Reservoirs of antimicrobial resistance genes in retail raw milk. PMID:32591006
Survey of drug resistance associated gene mutations in Mycobacterium tuberculosis, ESKAPE and other bacterial species. PMID:32488120
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604
Tags:
Tags
More detailed information about this field from each metasource.
microbial ecology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
public health and epidemiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
metagenomic sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
genetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:08.465552
Tags
More detailed information about this field from each metasource.
microbial ecology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
public health and epidemiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
metagenomic sequencing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
genetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:08.465552
microbial ecology metagenomics public health and epidemiology metagenomic sequencing genetics
Need help integrating and/or managing biomedical data?