ImMunoGeneTics Ontology
Names
More detailed information about this field from each metasource.
ImMunoGeneTics Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
IMGT
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Immunogenetics Ontology
metasource: Biontology / Bioportal
version: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
IMGT-ONTOLOGY
metasource: Biontology / Bioportal
version: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
Names
More detailed information about this field from each metasource.
ImMunoGeneTics Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
IMGT
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Immunogenetics Ontology
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
IMGT-ONTOLOGY
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
Other names: IMGT, Immunogenetics Ontology, IMGT-ONTOLOGY
Names
More detailed information about this field from each metasource.
ImMunoGeneTics Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
IMGT
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Immunogenetics Ontology
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
IMGT-ONTOLOGY
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-ONTOLOGY provides a specific vocabulary of the terminology to be used in immunogenetics and immunoinformatics. The ontology allows for the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional and three-dimensional structures.
Description
More detailed information about this field from each metasource.
IMGT-ONTOLOGY provides a specific vocabulary of the terminology to be used in immunogenetics and immunoinformatics. The ontology allows for the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional and three-dimensional structures.
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, "IDENTIFICATION", "CLASSIFICATION", "DESCRIPTION", "NUMEROTATION", "LOCALIZATION", "ORIENTATION" and "OBTENTION". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels. IMGT®, the international ImMunoGeneTics information system®, has been built on IMGT-ONTOLOGY. The version 1.0.3 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and an update of the concepts of CLASSIFICATION.
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. IMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, "IDENTIFICATION", "CLASSIFICATION", "DESCRIPTION", "NUMEROTATION", "LOCALIZATION", "ORIENTATION" and "OBTENTION". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:15.244526
Webpage:
http://imgt.org/IMGTindex/ontology.phpWebpage
More detailed information about this field from each metasource.
http://imgt.org/IMGTindex/ontology.php
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://www.imgt.org/
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
http://www.imgt.org/IMGTindex/ontology.php
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:15.244526
Licence:
Name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nc-nd/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
(7)
Publications
More detailed information about this field from each metasource.
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics
PMID: 24600447
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Ontology for immunogenetics: the IMGT-ONTOLOGY
PMID: 10745995
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-ONTOLOGY for immunogenetics and immunoinformatics
PMID: 15089751
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-ONTOLOGY 2012
PMID: 22654892
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm
PMID: 17949886
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
Antibody nomenclature: from IMGT-ONTOLOGY to INN definition
PMID: 21099347
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
http://www.imgt.org/IMGTindex/ontology.php
metasource: Biontology / Bioportal
version: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
Publications
More detailed information about this field from each metasource.
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics
PMID: 24600447
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Ontology for immunogenetics: the IMGT-ONTOLOGY
PMID: 10745995
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-ONTOLOGY for immunogenetics and immunoinformatics
PMID: 15089751
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-ONTOLOGY 2012
PMID: 22654892
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm
PMID: 17949886
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
Antibody nomenclature: from IMGT-ONTOLOGY to INN definition
PMID: 21099347
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
http://www.imgt.org/IMGTindex/ontology.php
metasource: Biontology / Bioportalversion: 1.0.3 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY
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Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics
PubMed citations: 98.
98 articles citing: Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics
Coevolved Canonical Loops Conformations of Single-Domain Antibodies: A Tale of Three Pockets Playing Musical Chairs. PMID:35720356
Transcriptomic Profiling Reveals Underlying Immunoregulation Mechanisms of Resistant Hypertension in Injection Drug Users. PMID:35706529
IMGT/3Dstructure-DB: T-Cell Receptor TR Paratope and Peptide/Major Histocompatibility pMH Contact Sites and Epitope. PMID:35622341
IMGT® Immunoinformatics Tools for Standardized V-DOMAIN Analysis. PMID:35622340
Cross-reactive antibodies targeting surface-exposed non-structural protein 1 (NS1) of dengue virus-infected cells recognize epitopes on the spaghetti loop of the β-ladder domain. PMID:35617160
Different roles of urinary light chains and serum light chains as potential biomarkers for monitoring disease activity in systemic lupus erythematosus. PMID:35602892
Aqueous Lumican Correlates with Central Retinal Thickness in Patients with Idiopathic Epiretinal Membrane: A Proteome Study. PMID:35571611
Broadly neutralizing antibodies target the coronavirus fusion peptide. PMID:35441178
IMGT® Biocuration and Analysis of the Rhesus Monkey IG Loci. PMID:35335026
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
B-cell intrinsic and extrinsic signals that regulate central tolerance of mouse and human B cells. PMID:34997597
Changes in the Proteome in the Development of Chronic Human Papillomavirus Infection-A Prospective Study in HIV Positive and HIV Negative Rwandan Women. PMID:34885095
IMGT® databases, related tools and web resources through three main axes of research and development. PMID:34875068
Profiling the T Cell Receptor Alpha/Delta Locus in Salmonids. PMID:34733285
The genetic impact of an Ebola outbreak on a wild gorilla population. PMID:34635054
The Value of Flow Cytometry Clonality in Large Granular Lymphocyte Leukemia. PMID:34572739
Identification of key genes and immune infiltration modulated by CPAP in obstructive sleep apnea by integrated bioinformatics analysis. PMID:34529670
A large repertoire of B cell lineages targeting one cluster of epitopes in a vaccinated rhesus macaque. PMID:34400018
Memory and naïve gamma delta regulatory T-cell gene expression in the first 24-weeks of peanut oral immunotherapy. PMID:34365017
Functional human IgA targets a conserved site on malaria sporozoites. PMID:34162751
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling. PMID:34037521
The T Cell Receptor (TRB) Locus in Tursiops truncatus: From Sequence to Structure of the Alpha/Beta Heterodimer in the Human/Dolphin Comparison. PMID:33919966
The Genomic Organisation of the TRA/TRD Locus Validates the Peculiar Characteristics of Dromedary δ-Chain Expression. PMID:33918850
Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants. PMID:33821267
Nanoproteomic Approach for Isolation and Identification of Potential Biomarkers in Human Urine from Adults with Normal Weight, Overweight and Obesity. PMID:33806905
Production and characterization of antibody against Opisthorchis viverrini via phage display and molecular simulation. PMID:33755687
Recent Advances in Camel Immunology. PMID:33569060
Lost structural and functional inter-relationships between Ig and TCR loci in mammals revealed in sharks. PMID:33449123
IMGT® Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci. PMID:33379283
Exploring the Limits of Combined Image/'omics Analysis for Non-cancer Histological Phenotypes. PMID:33193632
Antimalarial antibody repertoire defined by plasma IG proteomics and single B cell IG sequencing. PMID:33048842
The genetic basis of natural antibody titers of young healthy pigs and relationships with disease resilience. PMID:32962629
The expansion of the TRB and TRG genes in domestic goats (Capra hircus) is characteristic of the ruminant species. PMID:32912163
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
Decombinator V4: an improved AIRR compliant-software package for T-cell receptor sequence annotation? PMID:32853330
Identification of Prognostic Immune-Related Genes by Integrating mRNA Expression and Methylation in Lung Adenocarcinoma. PMID:32695805
Cell-to-cell expression dispersion of B-cell surface proteins is linked to genetic variants in humans. PMID:32620900
Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data. PMID:32574157
Evolution of the T-Cell Receptor (TR) Loci in the Adaptive Immune Response: The Tale of the TRG Locus in Mammals. PMID:32517024
Formation of ultralong DH regions through genomic rearrangement. PMID:32487018
IMGT® Biocuration and Comparative Study of the T Cell Receptor Beta Locus of Veterinary Species Based on Homo sapiens TRB. PMID:32431713
A single mutation increases heavy-chain heterodimer assembly of bispecific antibodies by inducing structural disorder in one homodimer species. PMID:32404368
Nurse shark T-cell receptors employ somatic hypermutation preferentially to alter alpha/delta variable segments associated with alpha constant region. PMID:32346855
Immune cell repertoires in breast cancer patients after adjuvant chemotherapy. PMID:32102986
Recent Advances in Allogeneic CAR-T Cells. PMID:32050611
Topology and expressed repertoire of the Felis catus T cell receptor loci. PMID:31906850
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences. PMID:31873728
Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires. PMID:31798572
The Camel Adaptive Immune Receptors Repertoire as a Singular Example of Structural and Functional Genomics. PMID:31681428
IMGT® and 30 Years of Immunoinformatics Insight in Antibody V and C Domain Structure and Function. PMID:31544835
Single-step Protein A and Protein G avidity purification methods to support bispecific antibody discovery and development. PMID:31462177
Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS. PMID:31451449
Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants. PMID:31420576
Recent progress in the analysis of αβT cell and B cell receptor repertoires. PMID:31326777
High-throughput analysis of the human thymic Vδ1+ T cell receptor repertoire. PMID:31273218
Comparative Analysis of the TRB Locus in the Camelus Genus. PMID:31231418
High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis. PMID:31024532
Androgen deprivation therapy promotes an obesity-like microenvironment in periprostatic fat. PMID:30959474
Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming. PMID:30936866
Determination of the complexity and diversity of the TCR β-chain CDR3 repertoire in bladder cancer using high-throughput sequencing. PMID:30881501
In silico analysis as a strategy to identify candidate epitopes with human IgG reactivity to study Porphyromonas gingivalis virulence factors. PMID:30859419
Overview of the Germline and Expressed Repertoires of the TRB Genes in Sus scrofa. PMID:30455691
Compositional characteristics of human peripheral TRBV pseudogene rearrangements. PMID:29651132
Evaluation of Antigen-Conjugated Fluorescent Beads to Identify Antigen-Specific B Cells. PMID:29628923
Coupling of Single Molecule, Long Read Sequencing with IMGT/HighV-QUEST Analysis Expedites Identification of SIV gp140-Specific Antibodies from scFv Phage Display Libraries. PMID:29545792
Characterization of the T-cell receptor repertoire by deep T cell receptor sequencing in tissues from patients with prostate cancer. PMID:29399194
Preferential use of unmutated immunoglobulin heavy variable region genes in Boxer dogs with chronic lymphocytic leukemia. PMID:29385200
Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library. PMID:29326697
Intracellular immunization against HIV infection with an intracellular antibody that mimics HIV integrase binding to the cellular LEDGF protein. PMID:29203900
Immunogenetic factors driving formation of ultralong VH CDR3 in Bos taurus antibodies. PMID:29200193
The antibody loci of the domestic goat (Capra hircus). PMID:29063126
Quantitative Analysis of Repertoire-Scale Immunoglobulin Properties in Vaccine-Induced B-Cell Responses. PMID:28855898
IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST. PMID:28651553
Is Next-Generation Sequencing the way to go for Residual Disease Monitoring in Acute Lymphoblastic Leukemia? PMID:28452038
Immunoglobulin domain interface exchange as a platform technology for the generation of Fc heterodimers and bispecific antibodies. PMID:28450393
Mechanisms and consequences of Jak-STAT signaling in the immune system. PMID:28323260
Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing. PMID:28321219
Human Immunoglobulin Heavy Gamma Chain Polymorphisms: Molecular Confirmation Of Proteomic Assessment. PMID:28265047
High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. PMID:28077404
IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST. PMID:27667992
Integrative systems medicine approaches to identify molecular targets in lymphoid malignancies. PMID:27580852
Cynomolgus macaque (Macaca fascicularis) immunoglobulin heavy chain locus description. PMID:27233955
IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors. PMID:26540440
Sheep (Ovis aries) T cell receptor alpha (TRA) and delta (TRD) genes and genomic organization of the TRA/TRD locus. PMID:26383271
ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data. PMID:26264428
Delta Inulin Adjuvant Enhances Plasmablast Generation, Expression of Activation-Induced Cytidine Deaminase and B-Cell Affinity Maturation in Human Subjects Receiving Seasonal Influenza Vaccine. PMID:26177480
tcR: an R package for T cell receptor repertoire advanced data analysis. PMID:26017500
Efficient generation of monoclonal antibodies from single rhesus macaque antibody secreting cells. PMID:25996084
A broad range of mutations in HIV-1 neutralizing human monoclonal antibodies specific for V2, V3, and the CD4 binding site. PMID:25965315
V genes in primates from whole genome sequencing data. PMID:25721877
The V gene repertoires of classical and atypical memory B cells in malaria-susceptible West African children. PMID:25556245
Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY. PMID:25521638
Immunoglobulin heavy variable (IGHV) genes and alleles: new entities, new names and implications for research and prognostication in chronic lymphocytic leukaemia. PMID:25388851
IMGT®, the international ImMunoGeneTics information system® 25 years on. PMID:25378316
Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity. PMID:25338678
Comparative analysis of human and mouse immunoglobulin variable heavy regions from IMGT/LIGM-DB with IMGT/HighV-QUEST. PMID:24992938
Ontology-supported research on vaccine efficacy, safety and integrative biological networks. PMID:24909153
Genomic V exons from whole genome shotgun data in reptiles. PMID:24893587 -
Ontology for immunogenetics: the IMGT-ONTOLOGY
PubMed citations: 52.
52 articles citing: Ontology for immunogenetics: the IMGT-ONTOLOGY
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. PMID:35639633
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
TR Locus Annotation and Characteristics of Rhinolophus ferrumequinum. PMID:34659234
Repertoire analysis of γδ T cells in the chicken enables functional annotation of the genomic region revealing highly variable pan-tissue TCR gamma V gene usage as well as identifying public and private repertoires. PMID:34610803
Characterization of the chicken T cell receptor γ repertoire by high-throughput sequencing. PMID:34548028
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
Profiling of the TCRβ repertoire in non-model species using high-throughput sequencing. PMID:30072736
Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies. PMID:29378911
A comprehensive analysis of the germline and expressed TCR repertoire in White Peking duck. PMID:28134319
Cynomolgus macaque (Macaca fascicularis) immunoglobulin heavy chain locus description. PMID:27233955
Practical guidelines for B-cell receptor repertoire sequencing analysis. PMID:26589402
Immunogenomics: a foundation for intelligent immune design. PMID:26582413
V genes in primates from whole genome sequencing data. PMID:25721877
Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY. PMID:25521638
IMGT®, the international ImMunoGeneTics information system® 25 years on. PMID:25378316
Genomic V exons from whole genome shotgun data in reptiles. PMID:24893587
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. PMID:24600447
IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling. PMID:23995877
Developmental progression of equine immunoglobulin heavy chain variable region diversity. PMID:23567345
IMGT-ONTOLOGY 2012. PMID:22654892
Antibody nomenclature: from IMGT-ONTOLOGY to INN definition. PMID:21099347
Feline T-Cell Receptor gamma V- and J-Region Sequences Retrieved from the Trace Archive and from Transcriptome Analysis of Cats. PMID:20634910
Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. PMID:20495067
From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences. PMID:20433708
A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY. PMID:20167082
IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF. PMID:19900967
Identification of Igsigma and Iglambda in channel catfish, Ictalurus punctatus, and Iglambda in Atlantic cod, Gadus morhua. PMID:19333591
BEID: database for sequence-structure-function information on antigen-antibody interactions. PMID:19238231
Occurrence of TRGV-BJ hybrid gene in SV40-transformed fibroblast cell lines. PMID:19142737
IMGT, the international ImMunoGeneTics information system. PMID:18978023
Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools. PMID:18831754
An ontology for major histocompatibility complex (MHC) alleles and molecules. PMID:18693794
IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. PMID:18503082
IMGT, the International ImMunoGeneTics Information System for Immunoinformatics : methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics. PMID:18463990
WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report. PMID:18046549
Building an ontology-driven database for clinical immune research. PMID:17238637
Curation of complex, context-dependent immunological data. PMID:16836764
IMGT/GeneInfo: T cell receptor gamma TRG and delta TRD genes in database give access to all TR potential V(D)J recombinations. PMID:16640788
IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences. PMID:16381979
An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities. PMID:16305755
IMGT, the international ImMunoGeneTics information system: a standardized approach for immunogenetics and immunoinformatics. PMID:16305737
Immunoglobulin light-chain genes in the rhesus macaque II: lambda light-chain germline sequences for subgroups IGLV1, IGLV2, IGLV3, IGLV4 and IGLV5. PMID:16189671
Analysis of T-cell receptor BV gene sequences in cattle reveals extensive duplication within the BV9 and BV20 subgroups. PMID:16187058
The design and implementation of the immune epitope database and analysis resource. PMID:15895191
IMGT, the international ImMunoGeneTics information system. PMID:15608269
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. PMID:15608191
Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire. PMID:15345030
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. PMID:15215425
IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data. PMID:14681396
IMGT, the international ImMunoGeneTics database. PMID:12520009
Issues in the design of medical ontologies used for knowledge sharing. PMID:11417202
IMGT, the international ImMunoGeneTics database. PMID:11125093 -
IMGT-ONTOLOGY for immunogenetics and immunoinformatics
PubMed citations: 40.
40 articles citing: IMGT-ONTOLOGY for immunogenetics and immunoinformatics
IMGT/3Dstructure-DB: T-Cell Receptor TR Paratope and Peptide/Major Histocompatibility pMH Contact Sites and Epitope. PMID:35622341
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
Single-cell isoform analysis in human immune cells. PMID:35130954
Sagacity in antibody humanization for therapeutics, diagnostics and research purposes: considerations of antibody elements and their roles. PMID:33928226
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
Modeling and mitigation of high-concentration antibody viscosity through structure-based computer-aided protein design. PMID:32379792
Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing. PMID:32312742
Restricted myeloperoxidase epitopes drive the adaptive immune response in MPO-ANCA vasculitis. PMID:31383567
Understanding the Significance and Implications of Antibody Numbering and Antigen-Binding Surface/Residue Definition. PMID:30386328
Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq. PMID:29548006
Measurable residual disease detection by high-throughput sequencing improves risk stratification for pediatric B-ALL. PMID:29284596
Low-affinity CD4+ T cells are major responders in the primary immune response. PMID:27976744
Synergistic Activity of Deguelin and Fludarabine in Cells from Chronic Lymphocytic Leukemia Patients and in the New Zealand Black Murine Model. PMID:27101369
Conventional and Regulatory CD4+ T Cells That Share Identical TCRs Are Derived from Common Clones. PMID:27100298
A complementary role of multiparameter flow cytometry and high-throughput sequencing for minimal residual disease detection in chronic lymphocytic leukemia: an European Research Initiative on CLL study. PMID:26639181
Identification of T cell clones without the need for sequencing. PMID:25960175
The ϕ6 cystovirus protein P7 becomes accessible to antibodies in the transcribing nucleocapsid: a probe for viral structural elements. PMID:25799314
Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY. PMID:25521638
Diversity of the antibody response to tetanus toxoid: comparison of hybridoma library to phage display library. PMID:25268771
Detection of minimal residual disease in B lymphoblastic leukemia by high-throughput sequencing of IGH. PMID:24970842
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. PMID:24600447
Bispecific engineered antibody domains (nanoantibodies) that interact noncompetitively with an HIV-1 neutralizing epitope and FcRn. PMID:22879932
IMGT-ONTOLOGY 2012. PMID:22654892
From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences. PMID:20433708
A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY. PMID:20167082
Structure and pathogenicity of antibodies specific for citrullinated collagen type II in experimental arthritis. PMID:19204106
Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools. PMID:18831754
Clonal predominance of CD8(+) T cells in patients with unexplained neutropenia. PMID:18279717
WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report. PMID:18046549
Integrating epitope data into the emerging web of biomedical knowledge resources. PMID:17479127
Molecular characterization of the immune system: emergence of proteins, processes, and domains. PMID:17294181
Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus. PMID:16799561
IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences. PMID:16381979
GeneSeer: a sage for gene names and genomic resources. PMID:16176584
Selection of a macaque Fab with framework regions like those in humans, high affinity, and ability to neutralize the protective antigen (PA) of Bacillus anthracis by binding to the segment of PA between residues 686 and 694. PMID:16048955
The design and implementation of the immune epitope database and analysis resource. PMID:15895191
IMGT, the international ImMunoGeneTics information system. PMID:15608269
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. PMID:15608191
Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire. PMID:15345030
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. PMID:15215425 -
IMGT-ONTOLOGY 2012
PubMed citations: 20.
20 articles citing: IMGT-ONTOLOGY 2012
IMGT® Immunoinformatics Tools for Standardized V-DOMAIN Analysis. PMID:35622340
IMGT® Biocuration and Analysis of the Rhesus Monkey IG Loci. PMID:35335026
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
IMGT® databases, related tools and web resources through three main axes of research and development. PMID:34875068
TR Locus Annotation and Characteristics of Rhinolophus ferrumequinum. PMID:34659234
IMGT® Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci. PMID:33379283
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
IMGT® Biocuration and Comparative Study of the T Cell Receptor Beta Locus of Veterinary Species Based on Homo sapiens TRB. PMID:32431713
IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST. PMID:28651553
IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST. PMID:27667992
Cynomolgus macaque (Macaca fascicularis) immunoglobulin heavy chain locus description. PMID:27233955
IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors. PMID:26540440
Evolution of V genes from the TRV loci of mammals. PMID:26024913
V genes in primates from whole genome sequencing data. PMID:25721877
Comparative analysis of human and mouse immunoglobulin variable heavy regions from IMGT/LIGM-DB with IMGT/HighV-QUEST. PMID:24992938
Genomic V exons from whole genome shotgun data in reptiles. PMID:24893587
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. PMID:24600447
Editorial: biological ontologies and semantic biology. PMID:24550936
The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis. PMID:24348479
IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling. PMID:23995877 -
IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm
PubMed citations: 16.
16 articles citing: IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm
IMGT/3Dstructure-DB: T-Cell Receptor TR Paratope and Peptide/Major Histocompatibility pMH Contact Sites and Epitope. PMID:35622341
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
IMGT® databases, related tools and web resources through three main axes of research and development. PMID:34875068
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST. PMID:28651553
Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY. PMID:25521638
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. PMID:24600447
IMGT-ONTOLOGY 2012. PMID:22654892
Antibody nomenclature: from IMGT-ONTOLOGY to INN definition. PMID:21099347
From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences. PMID:20433708
A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY. PMID:20167082
IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF. PMID:19900967
IMGT, the international ImMunoGeneTics information system. PMID:18978023
Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools. PMID:18831754
IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. PMID:18503082
IMGT, the International ImMunoGeneTics Information System for Immunoinformatics : methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics. PMID:18463990 -
Antibody nomenclature: from IMGT-ONTOLOGY to INN definition
PubMed citations: 12.
12 articles citing: Antibody nomenclature: from IMGT-ONTOLOGY to INN definition
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies. PMID:35327572
IMGT® databases, related tools and web resources through three main axes of research and development. PMID:34875068
Quantitative Description of Surface Complementarity of Antibody-Antigen Interfaces. PMID:34660699
Immunoglobulins or Antibodies: IMGT® Bridging Genes, Structures and Functions. PMID:32878258
IMGT® and 30 Years of Immunoinformatics Insight in Antibody V and C Domain Structure and Function. PMID:31544835
Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies. PMID:29378911
Genomic and expression analyses of Tursiops truncatus T cell receptor gamma (TRG) and alpha/delta (TRA/TRD) loci reveal a similar basic public γδ repertoire in dolphin and human. PMID:27528257
Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY. PMID:25521638
IMGT®, the international ImMunoGeneTics information system® 25 years on. PMID:25378316
MAbImprove: a French "Laboratoire d'excellence" (LabEx) dedicated to therapeutic antibodies. PMID:24842678
Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. PMID:24600447
IMGT-ONTOLOGY 2012. PMID:22654892 - http://www.imgt.org/IMGTindex/ontology.php
Tags:
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More detailed information about this field from each metasource.
antibody
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biological process
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
cellular component
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunoglobulin complex
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
proteome
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunogenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
immunoinformatics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:15.244526
Tags
More detailed information about this field from each metasource.
antibody
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biological process
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
cellular component
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunoglobulin complex
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
proteome
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunogenetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:15.244526
immunoinformatics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:15.244526
antibody biological process cellular component immunoglobulin complex molecular structure proteome structure immunogenetics immunoinformatics
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