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HSSP

Names
More detailed information about this field from each metasource.

HSSP
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

hssp
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Other names: hssp

Names

More detailed information about this field from each metasource.

HSSP

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

hssp

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

This source may no longer be available. No known URL could be resolved successfully.

Homology-derived secondary structure of proteins database.

Description

More detailed information about this field from each metasource.

Homology-derived secondary structure of proteins database.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Webpage:

http://swift.cmbi.ru.nl/gv/hssp/

Webpage

More detailed information about this field from each metasource.

http://swift.cmbi.ru.nl/gv/hssp/

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gkq1105
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

http://dx.doi.org/10.1093/nar/gkq1105

Tags:

Tags
More detailed information about this field from each metasource.

protein secondary structure
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

protein secondary structure

More to explore:

1/20

PDB facilities

Database of secondary structures of proteins

WHAT IF

PDB Related Datbases present a series of databases that run parallel to the PDB. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. ...

PDBFINDER reformatted PDB files

This database holds for each PDB file a structured, search-engine-friendly-formatted entry that holds the data-items most likely needed for people search for certain types of PDB entries. It is not us ...

PTGL

Protein Topology Graph library: Secondary structure-based protein topologies

RNA Characterization of Secondary Structure Motifs

RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...

PhyloPat

Phylogenetic patterns of genes from the Ensembl database

NRG-CING

Validated NMR structures of proteins and nucleic acids.

2DProts

A database including visualizations of protein secondary structure via 2D diagrams. The 2D diagrams are based on whole protein family and they take into account 2D structure of the protein family memb ...

ITS2

Predicted structures of internal transcribed spacer 2 (ITS2)

PDB_REDO databank

The PDB_REDO databank contains alternative (in many cases higher quality) versions of Protein Data Bank (PDB) structure models that were optimised by model refinement and rebuilding. The structure mo ...

MultiTaskDB

Moonlighting Proteins DataBase

RNA Atlas of Structure Probing

RASP (RNA Atlas of Structure Probing) is build from 161 deduplicated transcriptome-wide RNA secondary structures from datasets culled from 38 papers. RASP covers 18 species across animals, plants, bac ...

Human Unidentified Gene-Encoded large proteins database

HUGE is a database for human large proteins newly identified in the Kazusa cDNA project, the aim of which is to predict the primary structure of proteins from the sequences of human large cDNAs (>4 kb ...

Compilation and Creation of datasets from PDB

ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature an ...

UniProtKB Swiss-Prot

Manually annotated component of UniProtKB (produced by the UniProt consortium). It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated c ...

CUBAP

CUBAP (Codon Usage Biases Across Populations) is an interactive web portal for analyzing codon usage biases across populations. Although synonymous codon usage does not change the protein primary stru ...

rPredictor

rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots.

PDBselect

PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutal sequence identity selected from the protein data bank (PDB) to enable unbiased statisti ...

Structural Classification Of Proteins

The SCOP database is a curated both manually and with the use of automated tools. This freely available resource aims to provide a comprehensive description of the structural and evolutionary relation ...

NMPdb - Nuclear matrix associated proteins database

Nuclear matrix associated proteins database

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine

HSSP Names More detailed information about this field from each metasource. × HSSP metasource: bio.tools version: extracted_at: 2022-11-04T11:27:09.074783 hssp metasource: bio.tools version: extracted_at: 2022-11-04T11:27:09.074783 Close

Webpage:

Publications: Publications More detailed information about this field from each metasource. × http://dx.doi.org/10.1093/nar/gkq1105 metasource: bio.tools version: extracted_at: 2022-11-04T11:27:09.074783 Close

Tags: Tags More detailed information about this field from each metasource. × protein secondary structure metasource: bio.tools version: extracted_at: 2022-11-04T11:27:09.074783 Close

More to explore:

1/20

PDB facilities

WHAT IF

PDBFINDER reformatted PDB files

PTGL

RNA Characterization of Secondary Structure Motifs

PhyloPat

NRG-CING

2DProts

ITS2

PDB_REDO databank

MultiTaskDB

RNA Atlas of Structure Probing

Human Unidentified Gene-Encoded large proteins database

Compilation and Creation of datasets from PDB

UniProtKB Swiss-Prot

CUBAP

rPredictor

PDBselect

Structural Classification Of Proteins

NMPdb - Nuclear matrix associated proteins database

HSSP

Names
More detailed information about this field from each metasource.

HSSP
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

hssp
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gkq1105
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783

Tags:

Tags
More detailed information about this field from each metasource.

protein secondary structure
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:09.074783