Genomic Feature and Variation Ontology
Names
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Genomic Feature and Variation Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
GFVO
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
Names
More detailed information about this field from each metasource.
Genomic Feature and Variation Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
GFVO
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
Names
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Genomic Feature and Variation Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
GFVO
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). The GFVO specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed.
Description
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The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). The GFVO specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed.
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of data files that adhere to the Generic Feature Format Version 3 (GFF3, http://www.sequenceontology.org/resources/gff3.html), the General Transfer Format (GTF, http://mblab.wustl.edu/GTF22.html), the Genome Variation Format Version 1 (GVF, http://www.sequenceontology.org/resources/gvf.html), and the Variant Call Format (VCF, http://vcftools.sourceforge.net/specs.html), as well as the FASTA format (http://en.wikipedia.org/wiki/FASTA_format). The creation of the ontology was inspired by previous work of Robert Hoehndorf on RDF2OWL (http://code.google.com/p/rdf2owl). NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed. The full ontology is available at: http://www.biointerchange.org/gfvo
metasource: Biontology / Bioportalversion: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
Webpage:
https://github.com/BioInterchange/OntologiesWebpage
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https://github.com/BioInterchange/Ontologies
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://www.codamono.com/biointerchange/
metasource: Biontology / Bioportalversion: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
Licence:
Name: Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain DedicationLicence name
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Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
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https://creativecommons.org/publicdomain/zero/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
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GFVO: the Genomic Feature and Variation Ontology
PMID: 26019997
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://peerj.com/articles/933/
metasource: Biontology / Bioportal
version: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
Publications
More detailed information about this field from each metasource.
GFVO: the Genomic Feature and Variation Ontology
PMID: 26019997
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://peerj.com/articles/933/
metasource: Biontology / Bioportalversion: 1.0.6 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GFVO
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GFVO: the Genomic Feature and Variation Ontology
PubMed citations: 1.
1 articles citing: GFVO: the Genomic Feature and Variation Ontology
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299 - https://peerj.com/articles/933/
Tags:
Tags
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genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence feature
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence variant
metasource: Fairsharing.org
version: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence feature
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
sequence variant
metasource: Fairsharing.orgversion: FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome annotation sequence feature sequence variant
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