Generic Feature Format Version 3
Names
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Generic Feature Format Version 3
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GFF3
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Generic Feature Format Version 3
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GFF3
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Generic Feature Format Version 3
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GFF3
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The Generic Feature Format Version 3 (GFF3) format was developed after earlier formats, although widely used, became fragmented into multiple incompatible dialects. The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats. GFF3 files are nine-column, tab-delimited, plain text files. Literal use of tab, newline, carriage return, the percent (%) sign, and control characters must be encoded using RFC 3986 Percent-Encoding; no other characters may be encoded. Backslash and other ad-hoc escaping conventions that have been added to the GFF format are not allowed. The file contents may include any character in the set supported by the operating environment, although for portability with other systems, use of Latin-1 or Unicode are recommended.
Description
More detailed information about this field from each metasource.
The Generic Feature Format Version 3 (GFF3) format was developed after earlier formats, although widely used, became fragmented into multiple incompatible dialects. The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats. GFF3 files are nine-column, tab-delimited, plain text files. Literal use of tab, newline, carriage return, the percent (%) sign, and control characters must be encoded using RFC 3986 Percent-Encoding; no other characters may be encoded. Backslash and other ad-hoc escaping conventions that have been added to the GFF format are not allowed. The file contents may include any character in the set supported by the operating environment, although for portability with other systems, use of Latin-1 or Unicode are recommended.
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.mdWebpage
More detailed information about this field from each metasource.
https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Tags
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annotation
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
coding sequence
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
exon
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene feature
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
messenger rna
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
transcription factor binding site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
coding sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
exon
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene feature
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
messenger rna
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
transcription factor binding site prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: GFF3; Generic Feature Format Version 3; DOI: https://doi.org/10.25504/FAIRsharing.dnk0f6; Last edited: March 5, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
coding sequence dna sequences dna exon gene gene expression gene feature messenger rna transcription factor binding site prediction
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