Variation Ontology
Names
More detailed information about this field from each metasource.
Variation Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
VariO
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
VARIO
metasource: Biontology / Bioportal
version: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
Names
More detailed information about this field from each metasource.
Variation Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
VariO
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
VARIO
metasource: Biontology / Bioportalversion: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
Names
More detailed information about this field from each metasource.
Variation Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
VariO
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
VARIO
metasource: Biontology / Bioportalversion: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. VariO allows unambiguous description of variation effects as well as computerized analyses over databases utilizing the ontology for annotation. VariO is a position specific ontology that can be used to describe effects of variations on DNA, RNA and/or proteins.
Description
More detailed information about this field from each metasource.
Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. VariO allows unambiguous description of variation effects as well as computerized analyses over databases utilizing the ontology for annotation. VariO is a position specific ontology that can be used to describe effects of variations on DNA, RNA and/or proteins.
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.
metasource: Biontology / Bioportalversion: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
Webpage:
http://variationontology.orgWebpage
More detailed information about this field from each metasource.
http://variationontology.org
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2018-11-09 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/VARIO
Publications:
Publications
More detailed information about this field from each metasource.
Variation Ontology for annotation of variation effects and mechanisms
PMID: 24162187
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Types and effects of protein variations
PMID: 25616435
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Variation ontology: annotator guide
PMID: 24533660
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
VariOtator, a Software Tool for Variation Annotation with the Variation Ontology
PMID: 26773573
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Systematics for types and effects of DNA variations
PMID: 30591019
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
Variation Ontology for annotation of variation effects and mechanisms
PMID: 24162187
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Types and effects of protein variations
PMID: 25616435
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Variation ontology: annotator guide
PMID: 24533660
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
VariOtator, a Software Tool for Variation Annotation with the Variation Ontology
PMID: 26773573
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Systematics for types and effects of DNA variations
PMID: 30591019
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Variation Ontology for annotation of variation effects and mechanisms
PubMed citations: 21.
21 articles citing: Variation Ontology for annotation of variation effects and mechanisms
Inferring the molecular and phenotypic impact of amino acid variants with MutPred2. PMID:33219223
Systematics for types and effects of RNA variations. PMID:32951567
Poikilosis - pervasive biological variation. PMID:32913639
Variation benchmark datasets: update, criteria, quality and applications. PMID:32016318
Systematics for types and effects of DNA variations. PMID:30591019
Harnessing formal concepts of biological mechanism to analyze human disease. PMID:30586388
Enumerating consistent sub-graphs of directed acyclic graphs: an insight into biomedical ontologies. PMID:29949985
NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database. PMID:29688368
PON-P and PON-P2 predictor performance in CAGI challenges: Lessons learned. PMID:28224672
Human Variome Project Quality Assessment Criteria for Variation Databases. PMID:26919176
ClinVar: public archive of interpretations of clinically relevant variants. PMID:26582918
Human genotype-phenotype databases: aims, challenges and opportunities. PMID:26553330
FROG - Fingerprinting Genomic Variation Ontology. PMID:26244889
Improving the Sequence Ontology terminology for genomic variant annotation. PMID:26229585
GFVO: the Genomic Feature and Variation Ontology. PMID:26019997
Standard development at the Human Variome Project. PMID:25818894
PON-P2: prediction method for fast and reliable identification of harmful variants. PMID:25647319
Types and effects of protein variations. PMID:25616435
Organizing knowledge to enable personalization of medicine in cancer. PMID:25222080
Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation. PMID:24848695
Variation ontology: annotator guide. PMID:24533660 -
Types and effects of protein variations
PubMed citations: 11.
11 articles citing: Types and effects of protein variations
An Electrostatically-steered Conformational Selection Mechanism Promotes SARS-CoV-2 Spike Protein Variation. PMID:35595165
The potential of sperm bovine protamine as a protein marker of semen production and quality at the National Artificial Insemination Center of Indonesia. PMID:34840468
Homology modeling and global computational mutagenesis of human myosin VIIa. PMID:33889793
Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants. PMID:33502607
Systematics for types and effects of RNA variations. PMID:32951567
Poikilosis - pervasive biological variation. PMID:32913639
Systematics for types and effects of DNA variations. PMID:30591019
PON-SC - program for identifying steric clashes caused by amino acid substitutions. PMID:29187139
PON-P and PON-P2 predictor performance in CAGI challenges: Lessons learned. PMID:28224672
Human Variome Project Quality Assessment Criteria for Variation Databases. PMID:26919176
Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding. PMID:26650512 -
Variation ontology: annotator guide
PubMed citations: 4.
4 articles citing: Variation ontology: annotator guide
Systematics for types and effects of RNA variations. PMID:32951567
Systematics for types and effects of DNA variations. PMID:30591019
Human Variome Project Quality Assessment Criteria for Variation Databases. PMID:26919176
Types and effects of protein variations. PMID:25616435 -
VariOtator, a Software Tool for Variation Annotation with the Variation Ontology
PubMed citations: 3.
3 articles citing: VariOtator, a Software Tool for Variation Annotation with the Variation Ontology
Systematics for types and effects of RNA variations. PMID:32951567
Systematics for types and effects of DNA variations. PMID:30591019
Human Variome Project Quality Assessment Criteria for Variation Databases. PMID:26919176 -
Systematics for types and effects of DNA variations
PubMed citations: 3.
3 articles citing: Systematics for types and effects of DNA variations
Mapping OMIM Disease-Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes. PMID:34026820
Systematics for types and effects of RNA variations. PMID:32951567
Poikilosis - pervasive biological variation. PMID:32913639
Tags:
Tags
More detailed information about this field from each metasource.
dna structural variation
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequence variant
metasource: Fairsharing.org
version: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
dna structural variation
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequence variant
metasource: Fairsharing.orgversion: FAIRsharing.org: VariO; Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.65xkbs; Last edited: Feb. 21, 2020, 11:19 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
dna structural variation dna protein rna sequence variant
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