GMrepo

a database of curated and consistently annotated human gut metagenomes | GMrepo (data repository for Gut Microbiota) is a database of curated and consistently annotated human gut metagenomes. Its main purpose is to facilitate the reusability and accessibility of the rapidly growing human metagenomic data. This is achieved by consistently annotating the microbial contents of collected samples using state-of-art toolsets and by manual curation of the meta-data of the corresponding human hosts. GMrepo organizes the collected samples according to their associated phenotypes and includes all possible related meta-data such as age, sex, country, body-mass-index (BMI) and recent antibiotics usage. To make relevant information easier to access, GMrepo is equipped with a graphical query builder, enabling users to make customized, complex and biologically relevant queries

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GMrepo: a database of curated and consistently annotated human gut metagenomes
PMID: 31504765

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:49.309963

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• GMrepo: a database of curated and consistently annotated human gut metagenomes PubMed citations: 30.

  30 articles citing: GMrepo: a database of curated and consistently annotated human gut metagenomes

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  Exploration of the Potential Relationship Between Gut Microbiota Remodeling Under the Influence of High-Protein Diet and Crohn's Disease. PMID:35308389

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  ADDAGMA: A database for domestic animal gut microbiome atlas. PMID:35222847

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  Oral Intake of L-Ornithine-L-Aspartate Is Associated with Distinct Microbiome and Metabolome Changes in Cirrhosis. PMID:35215398

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  The microbiome of the buffalo digestive tract. PMID:35145088

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  Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions. PMID:35115054

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  Use of metagenomic microbial source tracking to investigate the source of a foodborne outbreak of cryptosporidiosis. PMID:35024477

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  Alterations in the Gut Microbiota and Hepatitis-B-Virus Infection in Southern Chinese Patients With Coexisting Non-Alcoholic Fatty Liver Disease and Type-2 Diabetes Mellitus. PMID:34993216

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  Quantitative Analysis and Visualization of the Interaction Between Intestinal Microbiota and Type 1 Diabetes in Children Based on Multi-Databases. PMID:34976889

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  GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison. PMID:34788838

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  Alterations of the Human Lung and Gut Microbiomes in Non-Small Cell Lung Carcinomas and Distant Metastasis. PMID:34787462

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  AMDB: a database of animal gut microbial communities with manually curated metadata. PMID:34747470

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  mBodyMap: a curated database for microbes across human body and their associations with health and diseases. PMID:34718713

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  Gut microbiota: a potential target for traditional Chinese medicine intervention in coronary heart disease. PMID:34686199

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  CeDR Atlas: a knowledgebase of cellular drug response. PMID:34634794

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  gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites. PMID:34500458

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  Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut Microbiome. PMID:34490420

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  Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry. PMID:34410648

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  A comprehensive review of integrative pharmacology-based investigation: A paradigm shift in traditional Chinese medicine. PMID:34221858

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  mbImpute: an accurate and robust imputation method for microbiome data. PMID:34183041

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  Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. PMID:34020714

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  Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models. PMID:33947803

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  Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring. PMID:33680353

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  B. adolescentis ameliorates chronic colitis by regulating Treg/Th2 response and gut microbiota remodeling. PMID:33557671

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  Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level. PMID:33468706

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  Cross-talk between the gut microbiota and monocyte-like macrophages mediates an inflammatory response to promote colitis-associated tumourigenesis. PMID:33122176

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  GIMICA: host genetic and immune factors shaping human microbiota. PMID:33045729

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  Method development for cross-study microbiome data mining: Challenges and opportunities. PMID:32802279

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  mAML: an automated machine learning pipeline with a microbiome repository for human disease classification. PMID:32588040

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  The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health. PMID:32556166

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  Disordered Gut Microbiota in Children Who Have Chronic Pancreatitis and Different Functional Gene Mutations. PMID:32352720

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metagenomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:49.309963

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data submission, annotation and curation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:49.309963

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genotype and phenotype

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:49.309963

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metagenomics data submission, annotation and curation genotype and phenotype